nojhan/paradiseo
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Author SHA1 Message Date
Adèle Harrissart
490e837f7a * New tree configuration of the project: 
.../
   ...           + -- EO
   |             |
   |             |
   +-- src ----- + -- EDO
   |             |
   |             |
   +-- test      + -- MO
   |             |
   |             |
   +-- tutorial  + -- MOEO
   |             |
   |             |
   +-- doc       + -- SMP
   |             |
   |             |
   ...           + -- EOMPI
                 |
                 |
                 + -- EOSERIAL

Question for current maintainers: ./README: new release?

Also:

* Moving out eompi & eoserial modules (issue #2).

* Correction of the errors when executing "make doc" command.

* Adding a solution for the conflicting headers problem (see the two CMake Cache
 Values: PROJECT_TAG & PROJECT_HRS_INSTALL_SUBPATH) (issue #1)

* Header inclusions:
        ** src: changing absolute paths into relative paths ('#include <...>' -> '#include "..."')
        ** test, tutorial: changing relative paths into absolute paths ('#include "..."' -> '#include <...>')

* Moving out some scripts from EDO -> to the root

* Add a new script for compilation and installation (see build_gcc_linux_install)

* Compilation with uBLAS library or EDO module: now ok

* Minor modifications on README & INSTALL files

* Comment eompi failed tests with no end

*** TODO: CPack (debian (DEB) & RedHat (RPM) packages) (issues #6 & #7) ***
 2014-09-06 13:04:35 +02:00
Adèle Harrissart
515bd5943d Merge branch 'moving-eompi-eoserial' into conflicting-headers 2014-08-04 10:06:58 +02:00
Adèle Harrissart
90d7931329 Compilation problems solved. 2014-07-23 15:18:53 +02:00
Adèle Harrissart
63b690d2c4 Merge branch 'make-doc-bug-branchcopy' into make-doc-bug 2014-07-22 15:33:11 +02:00
Adèle Harrissart
91bba00035 Contradiction between ./cmake/Target.cmake (make doc command) and ./CMakeLists.txt (if condition). 
Error when executing "make doc" command with DEO_ONLY=true flag :

Built target doc-eo
make[4]: *** No rule to make target `doc-edo'.  Stop.
make[3]: *** [CMakeFiles/doc] Error 2
make[2]: *** [CMakeFiles/doc.dir/all] Error 2
make[1]: *** [CMakeFiles/doc.dir/rule] Error 2
make: *** [doc] Error 2

Now resolved.

Contradiction between ./cmake/Target.cmake (make doc command) and ./CMakeLists.txt (if condition).

Error when executing "make doc" command with -DEO_ONLY=false flag :

make[4]: *** No rule to make target `doc-edo'.  Stop.
make[3]: *** [CMakeFiles/doc] Error 2
make[2]: *** [CMakeFiles/doc.dir/all] Error 2
make[1]: *** [CMakeFiles/doc.dir/rule] Error 2
make: *** [doc] Error 2

Now resolved.

Error and problems with smp documentation compilation ("make doc" or "make doc-smp" command with -DSMP=true flag).

Here the error :

error: Tag file `/home/aharrissart/workspace/thales/paradiseo/build/doc/smp.doxytag' does not exist or is not a file. Skipping it...

Some other problems with undocumented parameters...

Now resolved.

Comment unused EDO flag (declared in ../CMakeLists.txt file)
 2014-07-22 10:48:32 +02:00
Adèle Harrissart
b282bb8233 Add eompi test folder for compilation. 2014-06-18 10:16:27 +02:00
Adèle Harrissart
f6d5ac3c6b Move out eompi test folder. 2014-06-18 10:07:59 +02:00
Adèle Harrissart
4df7894ae1 Include sources path to eompi module in eo/src/CMakeLists.txt file 2014-06-18 09:53:01 +02:00
Adèle Harrissart
9aacf2184f Error in cmake/module/FindParadiseo.cmake 2014-06-18 09:39:12 +02:00
Adèle Harrissart
651e722de7 Merge branch 'moving-eompi' into 'moving-eoserial' 
Conflicts:
	CMakeLists.txt
	cmake/module/FindParadiseo.cmake
 2014-06-17 15:46:42 +02:00
Adèle Harrissart
95761470eb Missing if condition for EOMPI module in cmake/module/FindParadiseo.cmake file 2014-06-17 15:07:19 +02:00
Adèle Harrissart
b6ec15c911 Modifications on eompi/src/CMakeLists.txt file (module paths). 2014-06-17 14:53:23 +02:00
Adèle Harrissart
0b6a519aaf Add EOMPI component into cmake/module/FindParadiseo.cmake 2014-06-17 14:52:11 +02:00
Adèle Harrissart
7f88653b1e Redefine paths to the module sources and the module library and rename "mpi" module into "eompi". 2014-06-17 14:47:20 +02:00
Adèle Harrissart
1f4d361a22 Add EOSERIAL component into cmake/module/FindParadiseo.cmake 2014-06-17 11:45:44 +02:00
Adèle Harrissart
58b00ede5f Add a new CMakeLists.txt file for eompi compilation. 2014-06-17 09:41:01 +02:00
Adèle Harrissart
a4f5fd8012 Moving out ./eo/src/mpi/ content -> ./eompi/src/ 2014-06-17 09:38:11 +02:00
Adèle Harrissart
11a40c5684 Modifications on MPI files (compilation requires some eoserial module files). 2014-06-16 16:56:00 +02:00
Adèle Harrissart
9a75fb113e Modification on eo/src/CMakeLists.txt : comment the line which adds serial subdirectory for cmake compilation (subfolder now out of the eo module). 2014-06-16 16:05:18 +02:00
Adèle Harrissart
d4dd1b52ef Modifications on eoserial/src/CMakeLists.txt file (most of the time for module paths). 2014-06-16 15:04:44 +02:00
Adèle Harrissart
dea830da01 Define new paths to the module sources and the module library. 2014-06-16 14:50:19 +02:00
Adèle Harrissart
9be0bd9711 Add a new CMakeLists.txt file for eoserial compilation. 2014-06-16 14:38:02 +02:00
Adèle Harrissart
10d8587378 Comment unused EDO flag (declared in ../CMakeLists.txt file) 2014-06-16 11:34:32 +02:00
Adèle Harrissart
c96614ec18 Moving out ./eo/src/serial/ content -> ./eoserial/src/ 2014-06-13 16:37:28 +02:00
Adèle Harrissart
8ee0745b07 Error and problems with smp documentation compilation ("make doc" or "make doc-smp" command with -DSMP=true flag). 
Here the error :

error: Tag file `/home/aharrissart/workspace/thales/paradiseo/build/doc/smp.doxytag' does not exist or is not a file. Skipping it...

Some other problems with undocumented parameters...

Now resolved.
 2014-06-13 15:52:25 +02:00
Adèle Harrissart
004c63fe82 Contradiction between ./cmake/Target.cmake (make doc command) and ./CMakeLists.txt (if condition). 
Error when executing "make doc" command with -DEO_ONLY=false flag :

make[4]: *** No rule to make target `doc-edo'.  Stop.
make[3]: *** [CMakeFiles/doc] Error 2
make[2]: *** [CMakeFiles/doc.dir/all] Error 2
make[1]: *** [CMakeFiles/doc.dir/rule] Error 2
make: *** [doc] Error 2

Now resolved.
 2014-06-13 13:50:39 +02:00
Adèle Harrissart
eac4584eb7 Contradiction between ./cmake/Target.cmake (make doc command) and ./CMakeLists.txt (if condition). 
Error when executing "make doc" command with DEO_ONLY=true flag :

Built target doc-eo
make[4]: *** No rule to make target `doc-edo'.  Stop.
make[3]: *** [CMakeFiles/doc] Error 2
make[2]: *** [CMakeFiles/doc.dir/all] Error 2
make[1]: *** [CMakeFiles/doc.dir/rule] Error 2
make: *** [doc] Error 2

Now resolved.
 2014-06-13 11:53:04 +02:00
Johann Dreo
51a1af0924 Merge branch 'master' of https://gforge.inria.fr/git/paradiseo/paradiseo 2013-09-18 10:32:46 +02:00
Johann Dreo
5b39705a20 BUGFIX pop split everywhere in exp dual fitness assignment 
Apply the fitness assignment on both splited pop, not just one.
Apply also the partial update on splited pop.
Confine numeric valuesto double limits, to avoid overflows.
 2013-06-26 18:09:49 +02:00
Johann Dreo
6b886664e8 Replace a cout msg by a eo::log warning 2013-06-26 18:09:26 +02:00
liefooga
6fc4d043e0 fast computation of dominance-depth corrected for minimizing objectives 2013-06-25 16:28:25 +02:00
Johann Dreo
e6beab8e5c Use the fitness type instead of the objective vectors in fitness assignments 2013-06-25 15:42:56 +02:00
Johann Dreo
0567d7be6c Use a specific comparator for the dual objective vector 
Because we want to have a separated comparator to use in the archive or…
 2013-06-25 15:41:29 +02:00
Johann Dreo
2233403b5f Use a dedicated setup in dual HV metric, with feasibility 2013-06-21 11:26:41 +02:00
Johann Dreo
3d0db369bc Use the feasibility of the current individual for the feasability of the metric in dual fitness assignment 2013-06-21 11:09:15 +02:00
Johann Dreo
80aa04d6da Overload setup in the dual fitness assignment, to handle comparison overloading 2013-06-21 09:52:12 +02:00
Johann Dreo
161d137d50 Add templates types as members of the dual fitness 2013-06-21 09:51:25 +02:00
Johann Dreo
8340168ee8 BUGFIX: correct handling of initialization security in dual fitness 
Remove the operator= overloads.
Represent badly initialized dual fitness by a "?" for the feasibility.
 2013-06-20 13:48:28 +02:00
Johann Dreo
f8603acf3c bugfix: consider a dual fitness to be correctly initialized from a pair 2013-06-17 13:59:09 +02:00
Johann Dreo
6f4ecc603b bugfix correct asserts for nth element stat 2013-06-13 16:28:51 +02:00
Johann Dreo
2b80b91d28 Use the templatized type for the metric in binary metric stat 2013-06-13 16:25:55 +02:00
Johann Dreo
c6868cf494 bugfix: correct nth position in nth element stat 2013-06-13 16:25:32 +02:00
Johann Dreo
eef624e3f6 Do not try to call dual stats on empty pop, print "?" instead 2013-06-13 16:25:00 +02:00
Johann Dreo
966a5670cb Add an option to print names in front of values in stream monitor 2013-06-13 15:41:03 +02:00
Johann Dreo
6fa57622be Missing header and include guards for moeoBinaryMetricStat 2013-06-13 14:50:44 +02:00
Johann Dreo
0c82be47df Add an Nth element stat to compute median without sorting the pop 2013-06-13 14:50:08 +02:00
Johann Dreo
819c2c3106 [COMPATIBILITY] Remove a unused parameter in eoInterquartileRangeStat constructor 2013-06-13 14:49:08 +02:00
Johann Dreo
8679da695c Add a reference to the template type in eoStat 2013-06-13 14:48:40 +02:00
Johann Dreo
f4b71dffad Add a warning when computing stat in empty pop 2013-06-13 14:48:00 +02:00
Johann Dreo
67e4bb01fd Use EOType as a ref to the template in stats 2013-06-13 14:45:51 +02:00