Merge branch 'moving-eompi-eoserial' into conflicting-headers

CMakeLists.txt

@@ -56,25 +56,26 @@ include(${CMAKE_CURRENT_SOURCE_DIR}/cmake/Target.cmake)
 ######################################################################################
 
 ## Paths to sources of modules
-set(  EO_SRC_DIR "${CMAKE_SOURCE_DIR}/eo"   CACHE INTERNAL "ParadisEO-EO   source directory" FORCE)
-set( EDO_SRC_DIR "${CMAKE_SOURCE_DIR}/edo"  CACHE INTERNAL "ParadisEO-EDO  source directory" FORCE)
-set(  MO_SRC_DIR "${CMAKE_SOURCE_DIR}/mo"   CACHE INTERNAL "ParadisEO-MO   source directory" FORCE)
-set(MOEO_SRC_DIR "${CMAKE_SOURCE_DIR}/moeo" CACHE INTERNAL "ParadisEO-MOEO source directory" FORCE)
-set( SMP_SRC_DIR "${CMAKE_SOURCE_DIR}/smp"  CACHE INTERNAL "ParadisEO-SMP  source directory" FORCE)
-set( MPI_SRC_DIR "${CMAKE_SOURCE_DIR}/eo/src/mpi"  CACHE INTERNAL "ParadisEO-MPI source directory" FORCE)
+set(      EO_SRC_DIR "${CMAKE_SOURCE_DIR}/eo"         CACHE INTERNAL "ParadisEO-EO       source directory" FORCE)
+set(     EDO_SRC_DIR "${CMAKE_SOURCE_DIR}/edo"        CACHE INTERNAL "ParadisEO-EDO      source directory" FORCE)
+set(      MO_SRC_DIR "${CMAKE_SOURCE_DIR}/mo"         CACHE INTERNAL "ParadisEO-MO       source directory" FORCE)
+set(    MOEO_SRC_DIR "${CMAKE_SOURCE_DIR}/moeo"       CACHE INTERNAL "ParadisEO-MOEO     source directory" FORCE)
+set(     SMP_SRC_DIR "${CMAKE_SOURCE_DIR}/smp"        CACHE INTERNAL "ParadisEO-SMP      source directory" FORCE)
+set(   EOMPI_SRC_DIR "${CMAKE_SOURCE_DIR}/eompi"      CACHE INTERNAL "ParadisEO-EOMPI    source directory" FORCE)
+set(EOSERIAL_SRC_DIR "${CMAKE_SOURCE_DIR}/eoserial"   CACHE INTERNAL "ParadisEO-EOSERIAL source directory" FORCE)
 
 set(PROBLEMS_SRC_DIR "${CMAKE_SOURCE_DIR}/problems" CACHE INTERNAL "Problems dependant source directory" FORCE)
-
+ 
 set(CMAKE_BASE_SOURCE_DIR ${CMAKE_SOURCE_DIR})
 
 # All libraries are built in <build_dir>/lib/
-set(  EO_BIN_DIR "${CMAKE_BINARY_DIR}" CACHE INTERNAL "ParadisEO-EO   binary directory" FORCE)
-set( EDO_BIN_DIR "${CMAKE_BINARY_DIR}" CACHE INTERNAL "ParadisEO-EDO  binary directory" FORCE)
-set(  MO_BIN_DIR "${CMAKE_BINARY_DIR}" CACHE INTERNAL "ParadisEO-MO   binary directory" FORCE)
-set(MOEO_BIN_DIR "${CMAKE_BINARY_DIR}" CACHE INTERNAL "ParadisEO-MOEO binary directory" FORCE)
-set( SMP_BIN_DIR "${CMAKE_BINARY_DIR}" CACHE INTERNAL "ParadisEO-SMP  binary directory" FORCE)
-set( MPI_BIN_DIR "${CMAKE_BINARY_DIR}" CACHE INTERNAL "ParadisEO-MPI  binary directory" FORCE)
-
+set(      EO_BIN_DIR "${CMAKE_BINARY_DIR}" CACHE INTERNAL "ParadisEO-EO       binary directory" FORCE)
+set(     EDO_BIN_DIR "${CMAKE_BINARY_DIR}" CACHE INTERNAL "ParadisEO-EDO      binary directory" FORCE)
+set(      MO_BIN_DIR "${CMAKE_BINARY_DIR}" CACHE INTERNAL "ParadisEO-MO       binary directory" FORCE)
+set(    MOEO_BIN_DIR "${CMAKE_BINARY_DIR}" CACHE INTERNAL "ParadisEO-MOEO     binary directory" FORCE)
+set(     SMP_BIN_DIR "${CMAKE_BINARY_DIR}" CACHE INTERNAL "ParadisEO-SMP      binary directory" FORCE)
+set(   EOMPI_BIN_DIR "${CMAKE_BINARY_DIR}" CACHE INTERNAL "ParadisEO-EOMPI    binary directory" FORCE)
+set(EOSERIAL_BIN_DIR "${CMAKE_BINARY_DIR}" CACHE INTERNAL "ParadisEO-EOSERIAL binary directory" FORCE)
 
 set(EO_ONLY "false" CACHE BOOL "Only build EO and not the other modules")
 set(ENABLE_OPENMP "false" CACHE BOOL "Build EO with the OpenMP support (shared-memory parallel evaluators on multi-core)")
@@ -82,7 +83,7 @@ set(ENABLE_GNUPLOT "false" CACHE BOOL "Build EO with the GNUplot support (real-t
 #set(EDO "false" CACHE BOOL "Build the EDO module")
 set(EDO_USE_LIB "Eigen3" CACHE STRING "Which linear algebra library to use to build EDO ('UBlas' or 'Eigen3', Eigen3 is recommended)")
 set(SMP "false" CACHE BOOL "Build the SMP module")
-set(MPI "false" CACHE BOOL "Build the MPI module")
+set(EOMPI "false" CACHE BOOL "Build the MPI module")
 
 ## EO Module
 set(EO_MODULE_NAME "Evolving Object")
@@ -114,15 +115,22 @@ if(NOT EO_ONLY)
         add_subdirectory(${SMP_SRC_DIR})
     endif()
 
-    ## MPI Module
-    if(MPI)
+    ## EOMPI Module
+    if(EOMPI)
         find_package(MPI REQUIRED)
         add_definitions(-DWITH_MPI)
         set(CMAKE_CXX_COMPILE_FLAGS ${CMAKE_CXX_COMPILE_FLAGS} ${MPI_COMPILE_FLAGS})
         set(CMAKE_CXX_LINK_FLAGS ${CMAKE_CXX_LINK_FLAGS} ${MPI_LINK_FLAGS})
-        include_directories(${MPI_INCLUDE_PATH})
-        add_subdirectory(${MPI_SRC_DIR})
+        include_directories(${EOMPI_INCLUDE_PATH})
+        add_subdirectory(${EOMPI_SRC_DIR})
     endif()
+
+    ## EOSERIAL Module
+    #if(EOSERIAL)
+        set(EOSERIAL_MODULE_NAME "Serialization Module")
+        set(CMAKE_SOURCE_DIR ${EOSERIAL_SRC_DIR})
+        add_subdirectory(${EOSERIAL_SRC_DIR})
+    #endif()
 endif()
 
 ######################################################################################

cmake/module/FindParadiseo.cmake

@@ -21,6 +21,8 @@
 # - moeo
 # - smp
 # - peo
+# - eoserial
+# - eompi
 # You can use find_package(Paradiseo COMPONENTS ... ) to enable one or several components. If you not specifie component, all components will be load except SMP for compatibility reasons.
 #
 # Output
@@ -72,6 +74,10 @@ find_path(MOEO_INCLUDE_DIR moeo
           PATH_SUFFIXES include${INSTALL_SUB_DIR}/moeo moeo/src
           PATHS ${PARADISEO_SRC_PATHS})
 
+find_path(EOSERIAL_INCLUDE_DIR eoserial
+          PATH_SUFFIXES include${INSTALL_SUB_DIR}/eoserial eoserial/src
+          PATHS ${PARADISEO_SRC_PATHS})
+
 # Specific for SMP and PEO
 foreach(COMP ${PARADISEO_LIBRARIES_TO_FIND})
     if(${COMP} STREQUAL "smp")
@@ -81,14 +87,19 @@ foreach(COMP ${PARADISEO_LIBRARIES_TO_FIND})
               PATHS ${PARADISEO_SRC_PATHS})
     elseif(${COMP} STREQUAL "peo")
         set(PEO_FOUND true)
-        find_path(EDO_INCLUDE_DIR edo
-          PATH_SUFFIXES include${INSTALL_SUB_DIR}/edo edo/src
+        find_path(PEO_INCLUDE_DIR peo
+          PATH_SUFFIXES include${INSTALL_SUB_DIR}/peo peo/src
           PATHS ${PARADISEO_SRC_PATHS})
     elseif(${COMP} STREQUAL "edo")
         set(EDO_FOUND true)
-        find_path(EDO_INCLUDE_DIR peo
-              PATH_SUFFIXES include${INSTALL_SUB_DIR}/peo peo/src
+        find_path(EDO_INCLUDE_DIR edo
+              PATH_SUFFIXES include${INSTALL_SUB_DIR}/edo edo/src
               PATHS ${PARADISEO_SRC_PATHS})
+    elseif(${COMP} STREQUAL "eompi")
+        set(EOMPI_FOUND true)
+        find_path(EOMPI_INCLUDE_DIR eompi
+          PATH_SUFFIXES include${INSTALL_SUB_DIR}/eompi eompi/src
+          PATHS ${PARADISEO_SRC_PATHS})
     endif()
 endforeach()
 
@@ -102,6 +113,10 @@ if(PEO_FOUND)
     set(PARADISEO_INCLUDE_DIR ${PARADISEO_INCLUDE_DIR} ${PEO_INCLUDE_DIR})
 endif()
 
+if(EOMPI_FOUND)
+    set(PARADISEO_INCLUDE_DIR ${PARADISEO_INCLUDE_DIR} ${EOMPI_INCLUDE_DIR})
+endif()
+
 # find the requested modules
 set(PARADISEO_FOUND true) # will be set to false if one of the required modules is not found
 
@@ -127,6 +142,8 @@ set(PARADISEO_LIB_PATHS_SUFFIXES
         moeo/tutorial/examples/flowshop/lib #For flowshop library
         smp/lib
         peo/lib
+        eoserial/lib
+        eompi/lib
         lib 
         lib32 
         lib64
@@ -158,12 +175,16 @@ if(PARADISEO_FOUND)
     message(${EDO_INCLUDE_DIR})
     message(${MO_INCLUDE_DIR})
     message(${MOEO_INCLUDE_DIR})
+    message(${EOSERIAL_INCLUDE_DIR})
     if(SMP_FOUND)
         message(${SMP_INCLUDE_DIR})
     endif()
     if(PEO_FOUND)
         message(${PEO_INCLUDE_DIR})
     endif()
+    if(EOMPI_FOUND)
+        message(${EOMPI_INCLUDE_DIR})
+    endif()
 else()
     # include directory or library not found
     message(FATAL_ERROR "Could NOT find ParadisEO (missing : ${FIND_PARADISEO_MISSING})")

eo/src/CMakeLists.txt

@@ -2,6 +2,8 @@
 ### 1) Include the sources
 ######################################################################################
 
+include_directories(${EOMPI_SRC_DIR}/src)
+include_directories(${EOSERIAL_SRC_DIR}/src)
 include_directories(${CMAKE_CURRENT_SOURCE_DIR})
 
 ######################################################################################
@@ -47,7 +49,7 @@ install(DIRECTORY do es ga gp other utils
 add_subdirectory(es)
 add_subdirectory(ga)
 add_subdirectory(utils)
-add_subdirectory(serial)
+#add_subdirectory(serial)
 
 if(ENABLE_PYEO)
   add_subdirectory(pyeo)

eo/src/eoPopEvalFunc.h

@@ -31,10 +31,10 @@
 #include <apply.h>
 
 # ifdef WITH_MPI
-#include <mpi/eoMpi.h>
-#include <mpi/eoTerminateJob.h>
-#include <mpi/eoMpiAssignmentAlgorithm.h>
-#include <mpi/eoParallelApply.h>
+#include <eoMpi.h>
+#include <eoTerminateJob.h>
+#include <eoMpiAssignmentAlgorithm.h>
+#include <eoParallelApply.h>
 #include <utils/eoParallel.h>
 
 #include <cmath> // ceil

eo/src/utils/eoTimer.h

@@ -30,7 +30,7 @@ Authors:
 
 # include "utils/eoParallel.h" // eo::parallel
 
-# include "serial/eoSerial.h" // eo::Persistent
+# include <eoSerial.h> // eo::Persistent
 
 /**
  * @brief Timer allowing to measure time between a start point and a stop point.

eompi/CMakeLists.txt

@@ -0,0 +1,9 @@
+######################################################################################
+### Include subdirectories
+######################################################################################
+#add_subdirectory(doc)
+add_subdirectory(src)
+
+if(ENABLE_CMAKE_TESTING)
+    add_subdirectory(test)
+endif(ENABLE_CMAKE_TESTING)

eompi/src/CMakeLists.txt

@@ -3,13 +3,14 @@
 ######################################################################################
 
 include_directories(${EO_SRC_DIR}/src)
+include_directories(${EOSERIAL_SRC_DIR}/src)
 include_directories(${CMAKE_CURRENT_SOURCE_DIR})
 
 ######################################################################################
 ### 2) Define the eompi target
 ######################################################################################
 
-set(EOMPI_LIB_OUTPUT_PATH ${EO_BIN_DIR}/lib)
+set(EOMPI_LIB_OUTPUT_PATH ${EOMPI_BIN_DIR}/lib)
 set(LIBRARY_OUTPUT_PATH ${EOMPI_LIB_OUTPUT_PATH})
 
 set(EOMPI_SOURCES
@@ -23,7 +24,7 @@ add_library(eompi STATIC ${EOMPI_SOURCES})
 install(TARGETS eompi ARCHIVE DESTINATION ${LIB} COMPONENT libraries)
 
 file(GLOB HDRS *.h)
-install(FILES ${HDRS} DESTINATION include${INSTALL_SUB_DIR}/eo/mpi COMPONENT headers)
+install(FILES ${HDRS} DESTINATION include${INSTALL_SUB_DIR}/eompi COMPONENT headers)
 
 ######################################################################################
 ### 3) Optionnal

eompi/src/implMpi.h

@@ -23,7 +23,7 @@ Authors:
 # define __EO_IMPL_MPI_HPP__
 
 # include <mpi.h>
-# include <serial/eoSerial.h>
+# include <eoSerial.h>
 
 /**
  * This namespace contains reimplementations of some parts of the Boost::MPI API in C++, so as to be used in

eompi/test/CMakeLists.txt

@@ -8,10 +8,10 @@
 ### 1) Include the sources
 ######################################################################################
 
-message("EO SOURCE DIR: ${EO_SRC_DIR}")
-message("OMPI: ${MPI_DIR}")
+message("EOMPI: ${EOMPI_DIR}")
 
-include_directories(${MPI_DIR}/include)
+include_directories(${EOMPI_SRC_DIR}/src)
+include_directories(${EOSERIAL_SRC_DIR}/src)
 include_directories(${EO_SRC_DIR}/src)
 include_directories(${CMAKE_CURRENT_SOURCE_DIR})
 
@@ -20,7 +20,8 @@ include_directories(${CMAKE_CURRENT_SOURCE_DIR})
 ######################################################################################
 
 link_directories(${EO_BIN_DIR}/lib)
-link_directories(${MPI_DIR}/lib)
+link_directories(${EOMPI_BIN_DIR}/lib)
+link_directories(${EOSERIAL_BIN_DIR}/lib)
 
 ######################################################################################
 ### 3) Define your targets and link the librairies

eompi/test/t-mpi-common.h

@@ -1,7 +1,7 @@
 # ifndef __T_MPI_COMMON_H__
 # define __T_MPI_COMMON_H__
 
-#include <serial/eoSerial.h>
+#include <eoSerial.h>
 
 /**
  * @file t-mpi-common.h

eompi/test/t-mpi-distrib-exp.cpp

@@ -39,7 +39,7 @@
 
 # include <eo>
 
-# include <mpi/eoMpi.h>
+# include <eoMpi.h>
 # include "t-mpi-common.h"
 
 using namespace eo::mpi;

eompi/test/t-mpi-eval.cpp

@@ -30,9 +30,9 @@ Authors:
 #include <eoPopEvalFunc.h>
 
 #include <es/make_real.h>
-#include "../real_value.h"
+#include "../../eo/test/real_value.h"
 
-#include <mpi/eoMpi.h>
+#include <eoMpi.h>
 
 #include <vector>
 using namespace std;

eompi/test/t-mpi-multipleRoles.cpp

@@ -37,9 +37,9 @@ Authors:
  * This test requires exactly 7 hosts. If the size is bigger, an exception will be thrown at the beginning.
  **/
 
-# include <mpi/eoMpi.h>
-# include <mpi/eoParallelApply.h>
-# include <mpi/eoTerminateJob.h>
+# include <eoMpi.h>
+# include <eoParallelApply.h>
+# include <eoTerminateJob.h>
 
 # include "t-mpi-common.h"
 

eompi/test/t-mpi-multistart.cpp

@@ -1,4 +1,4 @@
-# include <mpi/eoMultiStart.h>
+# include <eoMultiStart.h>
 using namespace eo::mpi;
 
 #include <stdexcept>

eompi/test/t-mpi-parallelApply.cpp

@@ -39,9 +39,9 @@ Authors:
  * beginning;
  */
 
-# include <mpi/eoMpi.h>
-# include <mpi/eoParallelApply.h>
-# include <mpi/eoTerminateJob.h>
+# include <eoMpi.h>
+# include <eoParallelApply.h>
+# include <eoTerminateJob.h>
 
 # include "t-mpi-common.h"
 

eompi/test/t-mpi-wrapper.cpp

@@ -29,9 +29,9 @@ Authors:
  * instanciating the store.
  */
 
-# include <mpi/eoMpi.h>
-# include <mpi/eoParallelApply.h>
-# include <mpi/eoTerminateJob.h>
+# include <eoMpi.h>
+# include <eoParallelApply.h>
+# include <eoTerminateJob.h>
 
 # include "t-mpi-common.h"
 

eompi/test/template-job.cpp

@@ -1,4 +1,4 @@
-# include <mpi/eoMpi.h>
+# include <eoMpi.h>
 
 using namespace eo::mpi;
 

eoserial/CMakeLists.txt

@@ -0,0 +1,6 @@
+######################################################################################
+### Include subdirectories
+######################################################################################
+
+#add_subdirectory(doc)
+add_subdirectory(src)

eoserial/src/CMakeLists.txt

@@ -9,7 +9,7 @@ include_directories(${CMAKE_CURRENT_SOURCE_DIR})
 ### 2) Define the eoserial target
 ######################################################################################
 
-set(EOSERIAL_LIB_OUTPUT_PATH ${EO_BIN_DIR}/lib)
+set(EOSERIAL_LIB_OUTPUT_PATH ${EOSERIAL_BIN_DIR}/lib)
 set(LIBRARY_OUTPUT_PATH ${EOSERIAL_LIB_OUTPUT_PATH})
 
 set(EOSERIAL_SOURCES
@@ -20,13 +20,17 @@ set(EOSERIAL_SOURCES
   )
 
 add_library(eoserial STATIC ${EOSERIAL_SOURCES})
-install(TARGETS eoserial ARCHIVE DESTINATION lib COMPONENT libraries)
-
-file(GLOB HDRS *.h)
-install(FILES ${HDRS} DESTINATION include/eo/serial COMPONENT headers)
+install(TARGETS eoserial ARCHIVE DESTINATION ${LIB} COMPONENT libraries)
 
 ######################################################################################
-### 3) Optionnal
+### 4) Look for headers
+######################################################################################
+
+file(GLOB HDRS *.h)
+install(FILES ${HDRS} DESTINATION ${INSTALL_SUB_DIR}/eoserial COMPONENT headers)
+
+######################################################################################
+### 5) Optionnal
 ######################################################################################
 
 set(EOSERIAL_VERSION ${GLOBAL_VERSION})