Commit graph

165 commits

Author SHA1 Message Date
jhumeau
50850230ea Work's start on Generic COSEARCH
git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1609 331e1502-861f-0410-8da2-ba01fb791d7f
2009-09-11 09:22:23 +00:00
jhumeau
d34328e5f6 git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1608 331e1502-861f-0410-8da2-ba01fb791d7f 2009-09-11 09:19:30 +00:00
jhumeau
9790ea54d3 git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1605 331e1502-861f-0410-8da2-ba01fb791d7f 2009-07-16 09:35:02 +00:00
jhumeau
57e28d42b8 git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1604 331e1502-861f-0410-8da2-ba01fb791d7f 2009-07-03 09:19:08 +00:00
jhumeau
26c5bfa7e6 Ref added
git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1602 331e1502-861f-0410-8da2-ba01fb791d7f
2009-07-02 09:42:04 +00:00
wcancino
121545e6d7 More work on the new commit infraestructure
git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1601 331e1502-861f-0410-8da2-ba01fb791d7f
2009-07-01 09:15:30 +00:00
jhumeau
83ffb12d41 Doc revised
git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1600 331e1502-861f-0410-8da2-ba01fb791d7f
2009-06-30 15:06:13 +00:00
jhumeau
3eba7aee33 Test for PLS1 and PLS2 added
git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1599 331e1502-861f-0410-8da2-ba01fb791d7f
2009-06-30 13:28:25 +00:00
jhumeau
70fea52db1 PLS1 and PLS2 added
git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1598 331e1502-861f-0410-8da2-ba01fb791d7f
2009-06-30 13:27:53 +00:00
wcancino
d0d4b4bd0e More working in new split infraestructure
git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1594 331e1502-861f-0410-8da2-ba01fb791d7f
2009-06-29 16:23:17 +00:00
wcancino
abca116edb More work on split new infraestructure
git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1593 331e1502-861f-0410-8da2-ba01fb791d7f
2009-06-26 15:15:59 +00:00
wcancino
5312c3321e New split calculation
git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1592 331e1502-861f-0410-8da2-ba01fb791d7f
2009-06-25 15:32:07 +00:00
jhumeau
ab01ec6e79 git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1591 331e1502-861f-0410-8da2-ba01fb791d7f 2009-06-25 14:41:21 +00:00
jhumeau
afe657449a git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1590 331e1502-861f-0410-8da2-ba01fb791d7f 2009-06-25 08:20:33 +00:00
wcancino
8aa685d740 Insert commit message here
git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1589 331e1502-861f-0410-8da2-ba01fb791d7f
2009-06-22 15:55:55 +00:00
wcancino
7a257679e2 Functions for the GTR evolutionary evolution model
git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1588 331e1502-861f-0410-8da2-ba01fb791d7f
2009-06-16 13:14:29 +00:00
wcancino
274422a8a7 Functions for the GTR evolutionary sequence model
git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1587 331e1502-861f-0410-8da2-ba01fb791d7f
2009-06-16 11:53:31 +00:00
wcancino
18ad6927d2 git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1586 331e1502-861f-0410-8da2-ba01fb791d7f 2009-06-15 14:25:25 +00:00
wcancino
8643a23b1a git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1585 331e1502-861f-0410-8da2-ba01fb791d7f 2009-06-15 13:11:43 +00:00
jhumeau
b2cf2a8f64 git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1583 331e1502-861f-0410-8da2-ba01fb791d7f 2009-04-21 12:41:41 +00:00
jhumeau
5716d59c9f git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1582 331e1502-861f-0410-8da2-ba01fb791d7f 2009-04-21 12:41:32 +00:00
jhumeau
49497e5563 git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1581 331e1502-861f-0410-8da2-ba01fb791d7f 2009-04-17 13:35:27 +00:00
jhumeau
96ac91d0d3 git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1580 331e1502-861f-0410-8da2-ba01fb791d7f 2009-04-16 11:55:53 +00:00
jhumeau
b8c573b6f5 git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1579 331e1502-861f-0410-8da2-ba01fb791d7f 2009-04-16 11:55:22 +00:00
jhumeau
a2c9db1140 git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1578 331e1502-861f-0410-8da2-ba01fb791d7f 2009-04-08 09:57:02 +00:00
jhumeau
04d7f9bdfd git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1576 331e1502-861f-0410-8da2-ba01fb791d7f 2009-03-27 09:54:25 +00:00
jhumeau
0409c65edf git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1575 331e1502-861f-0410-8da2-ba01fb791d7f 2009-03-26 16:29:57 +00:00
jhumeau
224e52b4c7 git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1574 331e1502-861f-0410-8da2-ba01fb791d7f 2009-03-26 14:49:24 +00:00
jhumeau
6fa3fef55b git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1573 331e1502-861f-0410-8da2-ba01fb791d7f 2009-03-26 10:24:02 +00:00
jhumeau
b78c094846 git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1572 331e1502-861f-0410-8da2-ba01fb791d7f 2009-03-26 10:19:59 +00:00
jhumeau
ef8d881c7c git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1571 331e1502-861f-0410-8da2-ba01fb791d7f 2009-03-26 10:09:23 +00:00
jhumeau
c2341a6502 git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1570 331e1502-861f-0410-8da2-ba01fb791d7f 2009-03-25 12:36:42 +00:00
jhumeau
950ec58a6e git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1569 331e1502-861f-0410-8da2-ba01fb791d7f 2009-03-25 10:33:12 +00:00
jhumeau
c84b5db20f git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1568 331e1502-861f-0410-8da2-ba01fb791d7f 2009-03-25 09:02:01 +00:00
jhumeau
8f78fa5d34 git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1567 331e1502-861f-0410-8da2-ba01fb791d7f 2009-03-23 14:32:44 +00:00
jhumeau
d954dc63c6 git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1566 331e1502-861f-0410-8da2-ba01fb791d7f 2009-03-20 15:22:51 +00:00
jhumeau
d7a94b4d5b git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1564 331e1502-861f-0410-8da2-ba01fb791d7f 2009-03-20 13:34:53 +00:00
jhumeau
b4232bbce0 git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1563 331e1502-861f-0410-8da2-ba01fb791d7f 2009-03-19 16:24:28 +00:00
jhumeau
0662f1cc4e git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1562 331e1502-861f-0410-8da2-ba01fb791d7f 2009-03-19 15:30:22 +00:00
jhumeau
2148721ad6 git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1561 331e1502-861f-0410-8da2-ba01fb791d7f 2009-03-18 16:52:47 +00:00
jhumeau
1d61b834d6 git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1560 331e1502-861f-0410-8da2-ba01fb791d7f 2009-03-18 14:15:11 +00:00
wcancino
f316e1dd35 OMP additions
git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1559 331e1502-861f-0410-8da2-ba01fb791d7f
2009-03-18 09:25:02 +00:00
jhumeau
dde940f14d git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1558 331e1502-861f-0410-8da2-ba01fb791d7f 2009-03-17 14:38:00 +00:00
wcancino
7b2d73fd5d git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1557 331e1502-861f-0410-8da2-ba01fb791d7f 2009-03-17 09:55:47 +00:00
wcancino
6647cde165 Final modifications to serial version
git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1556 331e1502-861f-0410-8da2-ba01fb791d7f
2009-03-17 09:54:32 +00:00
wcancino
d64e3ed67b Small changes
git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1555 331e1502-861f-0410-8da2-ba01fb791d7f
2009-03-17 09:47:40 +00:00
wcancino
4e4b713d44 Changes for the serial version
git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1554 331e1502-861f-0410-8da2-ba01fb791d7f
2009-03-17 09:36:28 +00:00
jhumeau
57007ca1e4 git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1553 331e1502-861f-0410-8da2-ba01fb791d7f 2009-03-17 09:29:49 +00:00
wcancino
8516b58dec Add the option to perform branch lenght optimization
git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1552 331e1502-861f-0410-8da2-ba01fb791d7f
2009-03-17 09:29:10 +00:00
jhumeau
c049221c09 git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1551 331e1502-861f-0410-8da2-ba01fb791d7f 2009-03-16 16:42:13 +00:00