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Functions for the GTR evolutionary evolution model

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git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1588 331e1502-861f-0410-8da2-ba01fb791d7f
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wcancino 2009-06-16 13:14:29 +00:00
commit 7a257679e2
1 changed files with 13 additions and 2 deletions
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contribution/branches/PhyloMOEA/PhyloMOEA/SubsModel.h
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@ -61,8 +61,19 @@ class SubstModel
~SubstModel() { delete eigensystem; for(int i=0; i<4; i++) delete[] ievec[i]; delete [] ievec; }
SubstModel(Sequences &p, int m = 0);
void init();
void set_kappa(double t) { kappa = t; init(); }
double get_kappa() { return kappa; }
inline void set_kappa(double t) { kappa = t; init(); }
inline void set_param(double *p) { a = p[0]; b = p[1]; c = p[2]; d = p[3]; e = p[4]; init(); }
inline void set_a(double p) { a = p; }
inline void set_b(double p) { b = p; }
inline void set_c(double p) { c = p; }
inline void set_d(double p) { d = p; }
inline void set_e(double p) { e = p; }
inline double get_a() { return a; }
inline double get_b() { return b; }
inline double get_c() { return c; }
inline double get_d() { return d; }
inline double get_e() { return e; }
inline double get_kappa() { return kappa; }
void print_rate_matrix();
};
#endif