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* New tree configuration of the project:

Browse source 
.../
   ...           + -- EO
   |             |
   |             |
   +-- src ----- + -- EDO
   |             |
   |             |
   +-- test      + -- MO
   |             |
   |             |
   +-- tutorial  + -- MOEO
   |             |
   |             |
   +-- doc       + -- SMP
   |             |
   |             |
   ...           + -- EOMPI
                 |
                 |
                 + -- EOSERIAL

Question for current maintainers: ./README: new release?

Also:

* Moving out eompi & eoserial modules (issue #2).

* Correction of the errors when executing "make doc" command.

* Adding a solution for the conflicting headers problem (see the two CMake Cache
 Values: PROJECT_TAG & PROJECT_HRS_INSTALL_SUBPATH) (issue #1)

* Header inclusions:
        ** src: changing absolute paths into relative paths ('#include <...>' -> '#include "..."')
        ** test, tutorial: changing relative paths into absolute paths ('#include "..."' -> '#include <...>')

* Moving out some scripts from EDO -> to the root

* Add a new script for compilation and installation (see build_gcc_linux_install)

* Compilation with uBLAS library or EDO module: now ok

* Minor modifications on README & INSTALL files

* Comment eompi failed tests with no end

*** TODO: CPack (debian (DEB) & RedHat (RPM) packages) (issues #6 & #7) ***
This commit is contained in:
Adèle Harrissart 2014-08-04 13:40:28 +02:00
commit 490e837f7a
2359 changed files with 7688 additions and 16329 deletions
Download patch file Download diff file Expand all files Collapse all files

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## EO Module
add_subdirectory(eo)
if(NOT EO_ONLY)
## MO Module
if(MO)
add_subdirectory(mo)
endif(MO)
## EDO Module
if(EDO)
add_subdirectory(edo)
endif(EDO)
## MOEO Module
if(MOEO)
add_subdirectory(moeo)
endif(MOEO)
## SMP Module
if(SMP)
add_subdirectory(smp)
endif(SMP)
## EOMPI Module
#if(EOMPI)
# add_subdirectory(eompi)
#endif(EOMPI)
## EOSERIAL Module
#if(EOSERIAL)
# add_subdirectory(eoserial)
#endif(EOSERIAL)
endif()

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######################################################################################
### 0) Documentation
######################################################################################
if(DOXYGEN_FOUND)
# Directory where the generation will be launched
set(EDO_DOC_DIR ${CMAKE_CURRENT_BINARY_DIR} CACHE INTERNAL "Documentation directory" FORCE)
# Name of the doxygene configuration file
set(EDO_DOC_CONFIG_FILE "edo.doxyfile" CACHE INTERNAL "Documentation configuration file")
if(DOXYGEN_EXECUTABLE)
# Creating the custom target
if(UNIX AND NOT ${CMAKE_VERBOSE_MAKEFILE})
add_custom_target(doc-edo
COMMAND ${DOXYGEN_EXECUTABLE} ${EDO_DOC_CONFIG_FILE} 2> /dev/null > /dev/null
WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}
)
else(UNIX AND NOT ${CMAKE_VERBOSE_MAKEFILE})
add_custom_target(doc-edo
COMMAND ${DOXYGEN_EXECUTABLE} ${EDO_DOC_CONFIG_FILE}
WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}
)
endif(UNIX AND NOT ${CMAKE_VERBOSE_MAKEFILE})
endif(DOXYGEN_EXECUTABLE)
configure_file("${CMAKE_CURRENT_SOURCE_DIR}/${EDO_DOC_CONFIG_FILE}.cmake"
"${EDO_DOC_DIR}/${EDO_DOC_CONFIG_FILE}")
install(
DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}
DESTINATION share/${PROJECT_TAG}/doc COMPONENT doc
PATTERN "CMakeFiles" EXCLUDE
PATTERN "cmake_install.cmake" EXCLUDE
PATTERN "CTestTestfile.cmake" EXCLUDE
PATTERN "Makefile" EXCLUDE
PATTERN "edo.cfg" EXCLUDE
PATTERN "edo.doxytag" EXCLUDE
)
else(DOXYGEN_FOUND)
message(STATUS "Unable to generate the documentation, Doxygen package not found")
endif(DOXYGEN_FOUND)

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/** @mainpage Welcome to Evolving Distribution Objects
@section shortcuts In one word
%EDO is an extension of %EO oriented toward Estimation-of-Distribution-like
Algorithms.
You can search for advanced features by browsing the <a
href="modules.html">modules</a> page.
@section intro Introduction
%EDO is an extension of %EO, that facilitate the design and implementation of
stochastic search metaheuristics. It is based on the assumption that those
algorithms are updating a probability distribution, that is used to generate
a sample (a population, in %EO) of solutions (individuals, in %EO).
Basically, EDO decompose the <em>variation</em> operators of %EO in a set of
sub-operators that are binded by a <em>distribution</em>. Thus, most of the
representation-independent operators of %EO can be used in %EDO algorithms.
Apart from choosing which distribution he want to use as a model, the user is
not supposed to directly manipulate it. Using the same approach than within %EO,
the user has just to indicate what he want to use, without having to bother how
he want to use it.
On the designer side, it is still possible to implement specific operators
without having to change other ones.
<img src="edo_design.png" />
The two main operators are the <em>Estimators</em>, that builds a given
distribution according to a population and the <em>Samplers</em> that builds a
population according to a distribution. There is also <em>Modifiers</em> that
are here to change arbitrarily the parameters of a distribution, if necessary.
<img src="edo_distrib.png" />
*/

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##########################################################################################
### EO Doc generation using Doxygen
##########################################################################################
IF (DOXYGEN_FOUND)
SET(EO_DOC_DIR ${CMAKE_CURRENT_BINARY_DIR} CACHE INTERNAL "EO documentation directory" FORCE)
SET(EO_DOC_CONFIG_FILE "eo.doxyfile" CACHE INTERNAL "EO documentation configuration file")
# Copy necessary doc files
CONFIGURE_FILE(${CMAKE_CURRENT_SOURCE_DIR}/index.h ${EO_DOC_DIR}/index.h COPYONLY)
FILE(GLOB header_files RELATIVE ${CMAKE_CURRENT_SOURCE_DIR} ${CMAKE_CURRENT_SOURCE_DIR}/*.htm*)
FILE(GLOB pdf_files RELATIVE ${CMAKE_CURRENT_SOURCE_DIR} ${CMAKE_CURRENT_SOURCE_DIR}/*.pdf)
FILE(GLOB jpg_files RELATIVE ${CMAKE_CURRENT_SOURCE_DIR} ${CMAKE_CURRENT_SOURCE_DIR}/*.jpg)
FOREACH (file ${header_files} ${pdf_files} ${jpg_files})
CONFIGURE_FILE(${CMAKE_CURRENT_SOURCE_DIR}/${file} ${EO_DOC_DIR}/${file} COPYONLY)
ENDFOREACH (file)
# define the doc target
IF (DOXYGEN_EXECUTABLE)
# Creating the custom target
if(UNIX AND NOT ${CMAKE_VERBOSE_MAKEFILE})
add_custom_target(doc-eo
COMMAND ${DOXYGEN_EXECUTABLE} ${EO_DOC_CONFIG_FILE} 2> /dev/null > /dev/null
WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}
)
else(UNIX AND NOT ${CMAKE_VERBOSE_MAKEFILE})
ADD_CUSTOM_TARGET(doc-eo
COMMAND ${DOXYGEN_EXECUTABLE} ${EO_DOC_CONFIG_FILE}
WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}
)
endif()
ENDIF (DOXYGEN_EXECUTABLE)
# configure cfg file
CONFIGURE_FILE(
"${CMAKE_CURRENT_SOURCE_DIR}/${EO_DOC_CONFIG_FILE}.cmake"
"${CMAKE_CURRENT_BINARY_DIR}/${EO_DOC_CONFIG_FILE}"
)
INSTALL(
DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}
DESTINATION share/${PROJECT_TAG}/doc COMPONENT doc
PATTERN "CMakeFiles" EXCLUDE
PATTERN "cmake_install.cmake" EXCLUDE
PATTERN "Makefile" EXCLUDE
PATTERN "eo.cfg" EXCLUDE
PATTERN "eo.doxytag" EXCLUDE
)
ELSE (DOXYGEN_FOUND)
MESSAGE(STATUS "Unable to generate the documentation, Doxygen package not found")
ENDIF (DOXYGEN_FOUND)

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2007-01-23 Jochen Küpper <jochen@fhi-berlin.mpg.de>
* eo.cfg (PROJECT_NUMBER): Bump to 1.0.1
2006-12-18 Jochen Küpper <jochen@fhi-berlin.mpg.de>
* mainpage.html, publications.html: Update for release.
* index.h: Add old ToDos
* eo.cfg (PROJECT_NUMBER): Bump version to 1.0
2006-12-03 Jochen Küpper <jochen@fhi-berlin.mpg.de>
* mainpage.html: update, add link to Niko Hansen's comparison
2006-12-01 Jochen Küpper <jochen@fhi-berlin.mpg.de>
* Makefile.am: Update for release-distribution.
* Local Variables:
* coding: iso-8859-1
* mode: flyspell
* fill-column: 80
* End:

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/** @mainpage Welcome to ParadisEO-SMP
@section Introduction
ParadisEO-SMP for Symmetric MultiProcessing or Shared Memory Parallelism is a module for multicores computations on several algorithms proposed by ParadiseEO. By simply wrapping the algorithms, it allows you to refer only to the API of your algorithm instead of learning a new one.
Different parallelism models are available such as the Master / Slaves Model or the Island Model.
@section tutorials Tutorials
Tutorials for ParadisEO-SMP are available in the "Tutorials section" of the <a href="http://paradiseo.gforge.inria.fr">ParadisEO website</a>.
@section LICENSE
This software is governed by the CeCILL license under French law and
abiding by the rules of distribution of free software. You can use,
modify and/ or redistribute the software under the terms of the CeCILL
license as circulated by CEA, CNRS and INRIA at the following URL
"http://www.cecill.info".
As a counterpart to the access to the source code and rights to copy,
modify and redistribute granted by the license, users are provided only
with a limited warranty and the software's author, the holder of the
economic rights, and the successive licensors have only limited liability.
In this respect, the user's attention is drawn to the risks associated
with loading, using, modifying and/or developing or reproducing the
software by the user in light of its specific status of free software,
that may mean that it is complicated to manipulate, and that also
therefore means that it is reserved for developers and experienced
professionals having in-depth computer knowledge. Users are therefore
encouraged to load and test the software's suitability as regards their
requirements in conditions enabling the security of their systems and/or
data to be ensured and, more generally, to use and operate it in the
same conditions as regards security.
The fact that you are presently reading this means that you have had
knowledge of the CeCILL license and that you accept its terms.
ParadisEO WebSite : http://paradiseo.gforge.inria.fr
Contact: paradiseo-help@lists.gforge.inria.fr
*/
/** @page webpages Related webpages
- ParadisEO <a href="http://paradiseo.gforge.inria.fr">homepage</a>
- INRIA GForge <a href="http://gforge.inria.fr/projects/paradiseo/">project page</a>
- <a href="../../README">README</a>
*/

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######################################################################################
### 0) Documentation
######################################################################################
if(DOXYGEN_FOUND)
# Directory where the generation will be launched
set(MO_DOC_DIR ${CMAKE_CURRENT_BINARY_DIR} CACHE INTERNAL "Documentation directory" FORCE)
# Name of the doxygene configuration file
set(MO_DOC_CONFIG_FILE "mo.doxyfile" CACHE INTERNAL "Documentation configuration file")
if(DOXYGEN_EXECUTABLE)
# Creating the custom target
if(UNIX AND NOT ${CMAKE_VERBOSE_MAKEFILE})
add_custom_target(doc-mo
COMMAND ${DOXYGEN_EXECUTABLE} ${MO_DOC_CONFIG_FILE} 2> /dev/null > /dev/null
WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR})
else(UNIX AND NOT ${CMAKE_VERBOSE_MAKEFILE})
add_custom_target(doc-mo
COMMAND ${DOXYGEN_EXECUTABLE} ${MO_DOC_CONFIG_FILE}
WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR})
endif(UNIX AND NOT ${CMAKE_VERBOSE_MAKEFILE})
endif(DOXYGEN_EXECUTABLE)
configure_file("${CMAKE_CURRENT_SOURCE_DIR}/${MO_DOC_CONFIG_FILE}.cmake"
"${MO_DOC_DIR}/${MO_DOC_CONFIG_FILE}")
install(
DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}
DESTINATION share/${PROJECT_TAG}/doc COMPONENT doc
PATTERN "CMakeFiles" EXCLUDE
PATTERN "cmake_install.cmake" EXCLUDE
PATTERN "CTestTestfile.cmake" EXCLUDE
PATTERN "Makefile" EXCLUDE
PATTERN "mo.cfg" EXCLUDE
PATTERN "mo.doxytag" EXCLUDE
)
else(DOXYGEN_FOUND)
message(STATUS "Unable to generate the documentation, Doxygen package not found")
endif(DOXYGEN_FOUND)

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/** @mainpage Welcome to ParadisEO-MO
@section Introduction
ParadisEO-MO is a white-box object-oriented generic framework dedicated to the flexible design of local search algorithms (hill-climbing, tabu search, simulated annealing, ...)
@section tutorials Tutorials
Tutorials for ParadisEO-MO are available in the "Tutorials section" of the <a href="http://paradiseo.gforge.inria.fr">ParadisEO website</a>.
@section Design
For an introduction to the design of ParadisEO-MO,
you can look at the <a href="http://paradiseo.gforge.inria.fr">ParadisEO website</a>.
@section LICENSE
This software is governed by the CeCILL license under French law and
abiding by the rules of distribution of free software. You can use,
modify and/ or redistribute the software under the terms of the CeCILL
license as circulated by CEA, CNRS and INRIA at the following URL
"http://www.cecill.info".
As a counterpart to the access to the source code and rights to copy,
modify and redistribute granted by the license, users are provided only
with a limited warranty and the software's author, the holder of the
economic rights, and the successive licensors have only limited liability.
In this respect, the user's attention is drawn to the risks associated
with loading, using, modifying and/or developing or reproducing the
software by the user in light of its specific status of free software,
that may mean that it is complicated to manipulate, and that also
therefore means that it is reserved for developers and experienced
professionals having in-depth computer knowledge. Users are therefore
encouraged to load and test the software's suitability as regards their
requirements in conditions enabling the security of their systems and/or
data to be ensured and, more generally, to use and operate it in the
same conditions as regards security.
The fact that you are presently reading this means that you have had
knowledge of the CeCILL license and that you accept its terms.
ParadisEO WebSite : http://paradiseo.gforge.inria.fr
Contact: paradiseo-help@lists.gforge.inria.fr
*/
/** @page webpages Related webpages
- ParadisEO <a href="http://paradiseo.gforge.inria.fr">homepage</a>
- INRIA GForge <a href="http://gforge.inria.fr/projects/paradiseo/">project page</a>
- <a href="../../README">README</a>
*/

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######################################################################################
### 0) Documentation
######################################################################################
if(DOXYGEN_FOUND)
# Directory where the generation will be launched
set(MOEO_DOC_DIR ${CMAKE_CURRENT_BINARY_DIR} CACHE INTERNAL "Documentation directory" FORCE)
# Name of the doxygene configuration file
set(MOEO_DOC_CONFIG_FILE "moeo.doxyfile" CACHE INTERNAL "Documentation configuration file")
if(DOXYGEN_EXECUTABLE)
# Creating the custom target
if(UNIX AND NOT ${CMAKE_VERBOSE_MAKEFILE})
add_custom_target(doc-moeo
COMMAND ${DOXYGEN_EXECUTABLE} ${MOEO_DOC_CONFIG_FILE} 2> /dev/null > /dev/null
WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}
)
else(UNIX AND NOT ${CMAKE_VERBOSE_MAKEFILE})
add_custom_target(doc-moeo
COMMAND ${DOXYGEN_EXECUTABLE} ${MOEO_DOC_CONFIG_FILE}
WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}
)
endif(UNIX AND NOT ${CMAKE_VERBOSE_MAKEFILE})
endif(DOXYGEN_EXECUTABLE)
configure_file("${CMAKE_CURRENT_SOURCE_DIR}/${MOEO_DOC_CONFIG_FILE}.cmake"
"${MOEO_DOC_DIR}/${MOEO_DOC_CONFIG_FILE}")
install(
DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}
DESTINATION share/${PROJECT_TAG}/doc COMPONENT doc
PATTERN "CMakeFiles" EXCLUDE
PATTERN "cmake_install.cmake" EXCLUDE
PATTERN "CTestTestfile.cmake" EXCLUDE
PATTERN "Makefile" EXCLUDE
PATTERN "moeo.cfg" EXCLUDE
PATTERN "moeo.doxytag" EXCLUDE
)
else(DOXYGEN_FOUND)
message(STATUS "Unable to generate the documentation, Doxygen package not found")
endif(DOXYGEN_FOUND)

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/** @mainpage Welcome to ParadisEO-MOEO
@section Introduction
ParadisEO-MOEO is a white-box object-oriented generic framework dedicated to the flexible design of evolutionary multi-objective algorithms.
This paradigm-free software embeds some features and techniques for Pareto-based resolution and
aims to provide a set of classes allowing to ease and speed up the development of computationally efficient programs.
It is based on a clear conceptual distinction between the solution methods and the multi-objective problems they are intended to solve.
This separation confers a maximum design and code reuse.
ParadisEO-MOEO provides a broad range of archive-related features (such as elitism or performance metrics)
and the most common Pareto-based fitness assignment strategies (MOGA, NSGA, SPEA, IBEA and more). Dominance-based Local Search are also available.
Furthermore, parallel and distributed models as well as hybridization mechanisms can be applied to an algorithm designed within ParadisEO-MOEO
using the whole version of ParadisEO.
@section tutorials Tutorials
Tutorials for ParadisEO-MOEO are available in the "Tutorials section" of the <a href="http://paradiseo.gforge.inria.fr">ParadisEO website</a>.
@section Installation
The installation procedure of the package is detailed in the README file in the top-directory of the source-tree.
@section Design
For an introduction to the design of ParadisEO-MOEO,
you can look at the <a href="http://paradiseo.gforge.inria.fr">ParadisEO website</a>.
@section LICENSE
This software is governed by the CeCILL license under French law and
abiding by the rules of distribution of free software. You can use,
modify and/ or redistribute the software under the terms of the CeCILL
license as circulated by CEA, CNRS and INRIA at the following URL
"http://www.cecill.info".
As a counterpart to the access to the source code and rights to copy,
modify and redistribute granted by the license, users are provided only
with a limited warranty and the software's author, the holder of the
economic rights, and the successive licensors have only limited liability.
In this respect, the user's attention is drawn to the risks associated
with loading, using, modifying and/or developing or reproducing the
software by the user in light of its specific status of free software,
that may mean that it is complicated to manipulate, and that also
therefore means that it is reserved for developers and experienced
professionals having in-depth computer knowledge. Users are therefore
encouraged to load and test the software's suitability as regards their
requirements in conditions enabling the security of their systems and/or
data to be ensured and, more generally, to use and operate it in the
same conditions as regards security.
The fact that you are presently reading this means that you have had
knowledge of the CeCILL license and that you accept its terms.
ParadisEO WebSite : http://paradiseo.gforge.inria.fr
Contact: paradiseo-help@lists.gforge.inria.fr
*/
/** @page webpages Related webpages
- ParadisEO <a href="http://paradiseo.gforge.inria.fr">homepage</a>
- INRIA GForge <a href="http://gforge.inria.fr/projects/paradiseo/">project page</a>
- <a href="../../README">README</a>
*/

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######################################################################################
### 0) Documentation
######################################################################################
if(DOXYGEN_FOUND)
# Directory where the generation will be launched
set(SMP_DOC_DIR ${CMAKE_CURRENT_BINARY_DIR} CACHE INTERNAL "Documentation directory" FORCE)
# Name of the doxygene configuration file
set(SMP_DOC_CONFIG_FILE "smp.doxyfile" CACHE INTERNAL "Documentation configuration file")
CONFIGURE_FILE(${CMAKE_CURRENT_SOURCE_DIR}/index.h ${EO_DOC_DIR}/index.h COPYONLY)
if(DOXYGEN_EXECUTABLE)
# Creating the custom target
if(UNIX AND NOT ${CMAKE_VERBOSE_MAKEFILE})
add_custom_target(doc-smp
COMMAND ${DOXYGEN_EXECUTABLE} ${SMP_DOC_CONFIG_FILE} 2> /dev/null > /dev/null
WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR})
else(UNIX AND NOT ${CMAKE_VERBOSE_MAKEFILE})
add_custom_target(doc-smp
COMMAND ${DOXYGEN_EXECUTABLE} ${SMP_DOC_CONFIG_FILE}
WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR})
endif(UNIX AND NOT ${CMAKE_VERBOSE_MAKEFILE})
endif(DOXYGEN_EXECUTABLE)
configure_file("${CMAKE_CURRENT_SOURCE_DIR}/${SMP_DOC_CONFIG_FILE}.cmake"
"${CMAKE_CURRENT_BINARY_DIR}/${SMP_DOC_CONFIG_FILE}")
install(
DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}
DESTINATION share/${PROJECT_TAG}/doc COMPONENT doc
PATTERN "CMakeFiles" EXCLUDE
PATTERN "cmake_install.cmake" EXCLUDE
PATTERN "CTestTestfile.cmake" EXCLUDE
PATTERN "Makefile" EXCLUDE
PATTERN "smp.cfg" EXCLUDE
PATTERN "smp.doxytag" EXCLUDE
)
else(DOXYGEN_FOUND)
message(STATUS "Unable to generate the documentation, Doxygen package not found")
endif(DOXYGEN_FOUND)

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/** @mainpage Welcome to ParadisEO-SMP
@section Introduction
ParadisEO-SMP for Symmetric MultiProcessing or Shared Memory Parallelism is a module for multicores computations on several algorithms proposed by ParadiseEO. By simply wrapping the algorithms, it allows you to refer only to the API of your algorithm instead of learning a new one.
Different parallelism models are available such as the Master / Slaves Model or the Island Model.
@section tutorials Tutorials
Tutorials for ParadisEO-SMP are available in the "Tutorials section" of the <a href="http://paradiseo.gforge.inria.fr">ParadisEO website</a>.
@section LICENSE
This software is governed by the CeCILL license under French law and
abiding by the rules of distribution of free software. You can use,
modify and/ or redistribute the software under the terms of the CeCILL
license as circulated by CEA, CNRS and INRIA at the following URL
"http://www.cecill.info".
As a counterpart to the access to the source code and rights to copy,
modify and redistribute granted by the license, users are provided only
with a limited warranty and the software's author, the holder of the
economic rights, and the successive licensors have only limited liability.
In this respect, the user's attention is drawn to the risks associated
with loading, using, modifying and/or developing or reproducing the
software by the user in light of its specific status of free software,
that may mean that it is complicated to manipulate, and that also
therefore means that it is reserved for developers and experienced
professionals having in-depth computer knowledge. Users are therefore
encouraged to load and test the software's suitability as regards their
requirements in conditions enabling the security of their systems and/or
data to be ensured and, more generally, to use and operate it in the
same conditions as regards security.
The fact that you are presently reading this means that you have had
knowledge of the CeCILL license and that you accept its terms.
ParadisEO WebSite : http://paradiseo.gforge.inria.fr
Contact: paradiseo-help@lists.gforge.inria.fr
*/
/** @page webpages Related webpages
- ParadisEO <a href="http://paradiseo.gforge.inria.fr">homepage</a>
- INRIA GForge <a href="http://gforge.inria.fr/projects/paradiseo/">project page</a>
- <a href="../../README">README</a>
*/

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