added a depth initializer for strongly typed genetic programming added subtree xover for strongly typed genetic programming added branch mutation for strongly typed genetic programming added point mutation for strongly typed genetic programming added hoist mutation for strongly typed genetic programming
315 lines
7.6 KiB
C++
315 lines
7.6 KiB
C++
// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
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//-----------------------------------------------------------------------------
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// eoStParseTreeOp.h : crossover and mutation operators for the strongly typed GP
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// (c) Jeroen Eggermont 2001 for other mutation operators
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/*
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This library is free software; you can redistribute it and/or
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modify it under the terms of the GNU Lesser General Public
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License as published by the Free Software Foundation; either
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version 2 of the License, or (at your option) any later version.
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This library is distributed in the hope that it will be useful,
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but WITHOUT ANY WARRANTY; without even the implied warranty of
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MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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Lesser General Public License for more details.
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You should have received a copy of the GNU Lesser General Public
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License along with this library; if not, write to the Free Software
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Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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Contact: todos@geneura.ugr.es, http://geneura.ugr.es
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mak@dhi.dk
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jeggermo@liacs.nl
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*/
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//-----------------------------------------------------------------------------
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#ifndef eoStParseTreeOp_h
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#define eoStParseTreeOp_h
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#include <EO.h>
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#include <eoOp.h>
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#include <map.h>
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#include <iostream>
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#include <gp/eoParseTree.h>
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// a help function
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template <class EOT>
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void get_possible_nodes(const EOT &_eo, vector<int> &possible_nodes, const int type)
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{
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int n=0;
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possible_nodes.clear();
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// collect the possible crossover points in _eo (nodes with the same type)
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for(n=0; n < _eo.size(); n++)
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if (type == _eo[n]->type())
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possible_nodes.push_back(n);
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}
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/** eoStSubtreeXOver --> subtree xover for strongly typed tree-based genetic programming
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\class eoStSubtreeXOver eoStParseTreeOp.h gp/eoStParseTreeOp.h
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\ingroup StParseTree
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*/
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template<class FType, class Node>
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class eoStSubtreeXOver: public eoQuadOp< eoParseTree<FType, Node> > {
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public:
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typedef eoParseTree<FType,Node> EoType;
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/**
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* Constructor
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* @param _max_length the maximum size of an individual
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*/
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eoStSubtreeXOver( unsigned _max_length)
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: eoQuadOp<EoType>(), max_length(_max_length) {};
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/// the ckassname
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virtual string className() const { return "eoStSubtreeXOver"; };
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/// Dtor
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virtual ~eoStSubtreeXOver () {};
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/**
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* Perform crossover on two individuals
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* param _eo1 The first parent individual
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* param _eo2 The second parent individual
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*/
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bool operator()(EoType & _eo1, EoType & _eo2 )
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{
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int i = 0;
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vector<int> nodes;
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int n = 0;
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int type = 0;
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int j = 0;
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set<int> test;
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do
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{
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do // select a random node in _eo1 as crossover point, and check if we didn't try it already
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{
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i = rng.random(_eo1.size());
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}while(test.count(i) > 0);
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test.insert(i);
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type = _eo1[i]->type();
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get_possible_nodes<EoType>(_eo2, nodes, type);
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}while(nodes.empty() && (test.size() < _eo1.size()));
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if (nodes.empty()) // we failed to select a crossover point but tried all points (test.size() == _eo1.size()).
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return true; // should this be false ??
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// we did find at least one possible crossover point in _eo2
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n = rng.random(nodes.size());
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j = nodes[n];
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parse_tree<Node>::subtree tmp = _eo1[i];
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_eo1[i] = _eo2[j]; // insert subtree
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_eo2[j] = tmp;
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// we can't prune anymore
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/*
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_eo1.pruneTree(max_length);
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_eo2.pruneTree(max_length);
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*/
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return true;
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}
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private:
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unsigned max_length;
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};
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/** eoStBranchMutation --> replace a strongly typed subtree with a randomly created strongly typed subtree
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\class eoStBranchMutation eoStParseTreeOp.h gp/eoStParseTreeOp.h
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\ingroup StParseTree
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*/
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template<class FType, class Node>
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class eoStBranchMutation: public eoMonOp< eoParseTree<FType, Node> >
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{
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public:
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typedef eoParseTree<FType,Node> EoType;
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/**
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* Constructor
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* @param _init An instantiation of eoGpDepthInitializer
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* @param _max_length the maximum size of an individual
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*/
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eoStBranchMutation(eoInit<EoType>& _init, unsigned _max_length)
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: eoMonOp<EoType>(), max_length(_max_length), initializer(_init)
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{};
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/// the class name
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virtual string className() const { return "eoStBranchMutation"; };
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/// Dtor
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virtual ~eoStBranchMutation() {};
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/**
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* Mutate an individual
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* @param _eo1 The individual that is to be changed
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*/
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bool operator()(EoType& _eo1 )
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{
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int i = rng.random(_eo1.size());
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vector<int> nodes;
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int type = _eo1[i]->type();
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int j=0;
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int n=0;
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EoType eo2;
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do
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{
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initializer(eo2);
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get_possible_nodes(eo2, nodes, type);
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}while (nodes.empty());
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n = rng.random(nodes.size());
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j = nodes[n];
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_eo1[i] = eo2[j]; // insert subtree
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// no more pruning
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/*
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_eo1.pruneTree(max_length);
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*/
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return true;
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}
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private :
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unsigned max_length;
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eoInit<EoType>& initializer;
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};
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/** eoStPointMutation --> replace a Node with a Node of the same arity and type
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\class eoStPointMutation eoStParseTreeOp.h gp/eoStParseTreeOp.h
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\ingroup StParseTree
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*/
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template<class FType, class Node>
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class eoStPointMutation: public eoMonOp< eoParseTree<FType, Node> >
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{
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public:
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typedef eoParseTree<FType,Node> EoType;
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/**
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* Constructor
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* @param _initializor The vector of Nodes given to the eoGpDepthInitializer
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*/
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eoStPointMutation( vector<Node>& _node)
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: eoMonOp<EoType>()
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{
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unsigned int i=0;
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int arity=0;
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int type=0;
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vector<Node> node_vector;
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for(i=0; i < _node.size(); i++)
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{
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arity = _node[i].arity();
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type = _node[i].type();
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node_vector = node[type][arity];
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node_vector.push_back(_node[i]);
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node[type][arity]= node_vector;
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};
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};
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/// the class name
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virtual string className() const { return "eoStPointMutation"; };
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/// Dtor
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virtual ~eoStPointMutation() {};
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/**
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* Mutate an individual
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* @param _eo1 The individual that is to be changed
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*/
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bool operator()(EoType& _eo1 )
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{
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// select a random node i that is to be mutated
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int i = rng.random(_eo1.size());
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int arity = _eo1[i].arity();
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int type = _eo1[i]->type();
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int j = rng.random(node[type][arity].size());
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_eo1[i] = node[type][arity][j];
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return true;
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}
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private :
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map < int, map < int, vector<Node> > > node;
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};
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/** eoStHoistMutation --> replace the individual with one of its strongly typed subtree's
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\class eoStHoistMutation eoStParseTreeOp.h gp/eoStParseTreeOp.h
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\ingroup StParseTree
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*/
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template<class FType, class Node>
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class eoStHoistMutation: public eoMonOp< eoParseTree<FType, Node> >
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{
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public:
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typedef eoParseTree<FType,Node> EoType;
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/**
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* Constructor
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* @param _init An instantiation of eoStDepthInit
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* @param _max_length the maximum size of an individual
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*/
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eoStHoistMutation(eoInit<EoType>& _init, unsigned _max_length)
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: eoMonOp<EoType>(), max_length(_max_length), initializer(_init)
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{};
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/// the class name
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virtual string className() const { return "eoStHoistMutation"; };
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/// Dtor
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virtual ~eoStHoistMutation() {};
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/**
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* Mutate an individual
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* @param _eo1 The individual that is to be changed
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*/
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bool operator()(EoType& _eo1 )
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{
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vector<int> nodes;
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// get the type of the current tree
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int type = _eo1[ _eo1.size() - 1 ]->type();
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do
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{
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initializer(eo2);
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get_possible_nodes(eo2, nodes, type);
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}while (nodes.empty());
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// select a subtree-node to replace the current tree
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int n = rng.random(nodes.size());
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int i = nodes[n];
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EoType eo2(_eo1[i]);
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_eo1 = eo2;
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return true;
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}
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private :
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unsigned max_length;
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eoInit<EoType>& initializer;
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};
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#endif
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