Commit graph

45 commits

Author SHA1 Message Date
evomarc
bc1e98a65a Updated lists of headers in some Makefile.am (thanks to Claude Dion for pointing this out)
While there, changed the presentations of source and headers (1 per line with \)
2003-09-20 05:42:23 +00:00
evomarc
3a8d9dd7a9 Adding the generic operators for FIXED-LENGTH ORDERED genotypes eoFlOrXxxOp.h 2003-08-02 06:42:33 +00:00
maartenkeijzer
0a85f17803 Improved the check for changed. Now it will only set the changed flag when the elements that are flipped are actually different 2003-06-06 10:29:13 +00:00
jeggermo
347f64413e GCC 3.3 2003-05-16 14:28:52 +00:00
maartenkeijzer
19fe391056 fixed a bug reported on sourceforge 2003-03-18 16:52:31 +00:00
okoenig
86fa476c67 Removed "using namespace std" statements from header files in EO -- "std::" identifier were added where necessary. 2003-02-27 19:28:07 +00:00
evomarc
25a4894853 Turned the code that was testing for the existence of the size parameter
in to the call to getORcreateParam (actually, this was where this code
has been tested the first time)
2002-04-26 02:39:10 +00:00
evomarc
f41cd957c0 Changes due to MSVC 2001-11-17 07:22:59 +00:00
evomarc
d7c3d973c7 Small modifications here and there to be MSVC++ compatible
Mainly, time.h -> ctime
        definition of loop index out of loops when multiply used
        no typename in declaration using template typename
2001-11-10 09:02:17 +00:00
evomarc
a5e3abd9f6 Added the #pragma directive for MSVC++ in all .cpp 2001-11-10 06:59:02 +00:00
evomarc
0816b742d9 Adding PBIL files - simple PBIL algorithm with simple additive update rule 2001-11-08 06:49:38 +00:00
evomarc
9b7556d81e I have changed all calls to use an eoParser rather than an eoParameterLoader
This is required if you want to use the method getParamWithLongName that allows
one to get a value of a parameter read somewhere else.
After changing 3 calls due to that, I decided to change ALL calls within
the make_xxx functions
2001-11-08 06:14:59 +00:00
evomarc
f7377b0fcf All files on one line in Makefile.am (for Windows) 2001-10-18 04:37:14 +00:00
evomarc
d0d14c3ff8 Removed trailing string after #endif - it generates a lot of useless warning
on some versions of g++
2001-09-08 05:59:17 +00:00
evomarc
0f9f1cc3ea Comments update 2001-09-04 06:37:25 +00:00
jmerelo
88f281b606 Added 'Viral' operators with test. Implements the Mobile Genetic Elements Technique 2001-05-10 12:16:00 +00:00
evomarc
b7915a4bbe CHanged CXXFLAGS to nothing - so lib files remain of manageable size! 2001-05-08 04:44:30 +00:00
evomarc
f4d2630516 Corrected a problem in eoEsChromInit (it refused plain eoReal) + some
other minor modications (e.g. a dir in make_checkpoint where ALL file
will go).
2001-05-03 17:20:27 +00:00
evomarc
10064ad967 Adding Evolution Strategies:
src/es/eoEsGlobalXover.h and src/es/eoEsLocalXover.h for crossover
src/es/make_XXX_es.h for user-input
test/t-eoEsAll.cpp to test

However, an old bug appeared: className was not const in eoGenOp (and derived classes)
so I had to change that throughtout the hierarchy
2001-05-02 10:42:32 +00:00
evomarc
4a152dc172 Removing make_help.cpp 2001-05-01 05:00:29 +00:00
evomarc
d90286d890 Some changes in names, before too many users have to modify their code :-)
Changed es.h in src/es into make_es.h (was ambiguous with src/es.h)
Changed the interface of make_genotype - now templatized by the EOT
and not the fitness - this is mandatory for ES genoptypes as it allows to
choose the type of gentype at run-time (from existing types, of course!)

Also moved make_help.cpp into utils dir (otherwise you'd had to maintain
a copy into each representation dir!).
2001-04-30 13:01:07 +00:00
evomarc
1c75344197 Some changes in names, before too many users have to modify their code :-)
Changed ga.h in src/ga into make_ga.h (was ambiguous with src/ga.h)
Chenged the interface of make_genotype - now templatized by the EOT
and not the fitness - this is mandatory for ES genoptypes as it allows to
choose the type of gentype at run-time (from existing types, of course!)
2001-04-30 12:26:31 +00:00
evomarc
7b8999b205 Removed the -O2 from ga and es dirs - it takes waaaaaaaaaaaaay too much time
at least with g++ 2.95.3
2001-04-27 04:03:16 +00:00
evomarc
4968d64b05 Doing libes.a in src/es and adding t-eoReal.cpp in test
I had to move eoRealBounds to utils dir because of global objects
Some domino consequences here and there ...
2001-04-26 15:24:53 +00:00
evomarc
f7bdc4a074 Forgot the 2 representation dependent make_XXX.h 2001-04-24 05:08:08 +00:00
evomarc
56c9464306 The new libga
Apart from big changes in the src/ga dir, and the addition of the src/do dir
it also generated a few changes here and there, e.g. some include file still
missing. Also removed some warning from some test files.
2001-04-24 04:52:04 +00:00
evomarc
e3834441fd Added a new boolean argument to the ctor of eoBitMutation:
you can now specify a rate-per-bit that will be normalized by the chromSize
2001-04-12 05:29:34 +00:00
evomarc
ddc6650ce5 Added the signal handling - see eoCtrlCContinue.h
I've disabled it in case of MSC as I don't know if this works there ...

Also added a couple of "virtual" in the ga dir
2001-04-04 03:47:33 +00:00
maartenkeijzer
a79075f673 Modified eoInit so that it would use the eoRndGenerator base class.
To be able to use the primitive std::generate function, added a
set of wrappers in eoSTLFunctor.h that have the copy semantics most
STL functions expect (namely pass-by-value rather then pass-by-reference).

Updated test/Makefile.am to also test t-eoRandom
2001-02-19 12:23:13 +00:00
maartenkeijzer
025eb736ee eoVector is back (eoFixedLength and eoVariableLength are gone)
Also: introducing eoRndGenerators.h for eoRndGenerator derived classes:

  eoNormalGenerator
  eoUniformGenerator
  eoBooleanGenerator
  eoNegExpGenerator

Note the suffix that are added to aid in determining what these classes do
2001-02-17 10:51:31 +00:00
maartenkeijzer
3a9b5a0e7e Well, what do you know, major commit.
Changed the signature of eoMon, eoBin and eoQuadOp to return a bool,
without invalidating fitness. Added a set of invalidators to take over
that job (see for instance eoSGA and eoSGATransform how this can transparantly used)

Derived eoState from eoFunctorStore (for convenience, from a design perspective this may sound wrong)

Added a wrap_op function that does the wrapping for you (see eoOpContainer how this made this functor
exceedingly less hairy). Checked all the tests removed the eoGeneric*Op family (not needed anymore)
and of course changed all the operators to reflect the change (and found a few that didn't
invalidate the fitness, thus really pointing out the advantage of the current approach)
2001-02-14 10:35:26 +00:00
maartenkeijzer
dea8a51f7e Ok, updated the Makefile.am again to use the
make check

Command I picked up in the automake documentation (RTFM, you know)

Tagged a lot of header functions in the GnuPlot files with 'inline',
so they can be used from more than one sourcefile.

Ok, now the interesting news. Started a new library libga (not to be confused
with Matthew's GaLib). Here I suggest we put a fairly complete and configurable
genetic algorithm. Just to see how far we can stretch ourselves and also to have
a GA-componenent that can be used in other applications without having to rebuild
the entire thing. test/t-eoGA.cpp tests this library
2001-02-12 13:58:51 +00:00
evomarc
415b419671 The BIG change of general operator interface
I also changed
  - the eoQuadratic into eoQuad (as dicussed with Maarten)
  - the eoBin into eoBit, with more appropriate names for the "binary"
    operators (that can be unary!) as no one protested when I posted on
    eodev list
2001-02-09 05:09:26 +00:00
evomarc
00e21770ad Changed the (abstract) name for fitness from F to FitT so it matches
that of file eoFixedLength.h - it is far clearer in the documentation
diagrams this way.
2000-12-02 08:21:18 +00:00
evomarc
5e33a2e50b dded Uniform Crossover (!) and "deterministic" bit-filp mutation 2000-10-24 03:58:02 +00:00
evomarc
9cc1cfd1b4 Added the calls to base class I/O routines in printOn and readFrom 2000-10-24 03:57:10 +00:00
mac
ff108477c3 eoCounter?
eoEasyEA -- made it copyable again
eoEvalFunc -- added specialized eoEvalFuncCounter
eoEvolutionStrategy -- nothing much
eoGenContinue -- nothing
eoPop -- fixed nth_element_fitness
eoBitOp -- fixed error in xover
eoFileMonitor -- now appends always
eoParam -- worked around memory leak in MSC's strstream
eoParser -- changed -pconfig_file to @config_file
eoParser -- added messages instead of exception when required param is missing
eoStat -- added eoDistanceStat
t-eoFunctor -- don't know
2000-08-23 12:03:01 +00:00
mac
6d8e3a6504 Extreme cleanup, see src/obsolete for details 2000-08-10 14:18:34 +00:00
mac
c1b0a6c503 Removed dependence on eoUniform, changed it to use rng.random or rng.uniform directly 2000-06-10 13:22:53 +00:00
mac
6e925bedea Updated documentation to give proper include file in doxygen and define a module bitstring 2000-04-09 09:44:53 +00:00
gustavo
902d88fef6 adding & modifying .cvsignore's 2000-04-03 09:32:43 +00:00
gustavo
5fe7510807 fixing makefiles 2000-03-30 17:11:20 +00:00
gustavo
1fe3a72e10 changing Makefile.am's to accept new subdiretory structure 2000-03-30 14:20:25 +00:00
mac
6c79787c43 Changed some includes for the new dir structure 2000-03-22 16:49:35 +00:00
mac
2799347236 moving... 2000-03-22 14:23:20 +00:00