Modified eoInit so that it would use the eoRndGenerator base class.
To be able to use the primitive std::generate function, added a set of wrappers in eoSTLFunctor.h that have the copy semantics most STL functions expect (namely pass-by-value rather then pass-by-reference). Updated test/Makefile.am to also test t-eoRandom
This commit is contained in:
parent
e28211188a
commit
a79075f673
11 changed files with 240 additions and 83 deletions
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@ -62,6 +62,7 @@
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#include <other/eoString.h>
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#include <utils/eoRndGenerators.h>
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#include <eoInit.h>
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#include <eoOp.h>
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@ -3,7 +3,7 @@
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//-----------------------------------------------------------------------------
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// eoInit.h
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// (c) Maarten Keijzer 2000, GeNeura Team, 2000
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/*
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/*
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This library is free software; you can redistribute it and/or
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modify it under the terms of the GNU Lesser General Public
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License as published by the Free Software Foundation; either
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@ -27,10 +27,14 @@
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#ifndef _eoInit_H
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#define _eoInit_H
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#include <algorithm>
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#include <eoOp.h>
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#include <eoSTLFunctor.h>
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#include <utils/eoRndGenerators.h>
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/**
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Base (name) class for Initialization of chromosomes, used in a population
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Base (name) class for Initialization of chromosomes, used in a population
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contructor. It is derived from eoMonOp, so it can be used
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inside the algorithm as well.
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@ -42,25 +46,29 @@ class eoInit : public eoUF<EOT&, void>
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{};
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/**
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Initializor for fixed length representations with a single type
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Initializer for fixed length representations with a single type
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*/
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template <class EOT, class Gen>
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template <class EOT>
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class eoInitFixedLength: public eoInit<EOT>
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{
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public:
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eoInitFixedLength(unsigned _howmany, Gen _generator = Gen())
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typedef typename EOT::AtomType AtomType;
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eoInitFixedLength(unsigned _howmany, eoRndGenerator<AtomType>& _generator)
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: howmany(_howmany), generator(_generator) {}
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void operator()(EOT& chrom)
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{
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chrom.resize(howmany);
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generate(chrom.begin(), chrom.end(), generator);
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std::generate(chrom.begin(), chrom.end(), generator);
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chrom.invalidate();
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}
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private :
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unsigned howmany;
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Gen generator;
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/// generic wrapper for eoFunctor (s), to make them have the function-pointer style copy semantics
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eoSTLF<AtomType> generator;
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};
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/**
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@ -70,8 +78,8 @@ template <class EOT, class Gen>
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class eoInitVariableLength: public eoInit<EOT>
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{
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public:
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eoInitVariableLength(unsigned _minSize, unsigned _maxSize, Gen _generator = Gen())
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: offset(_minSize), extent(_maxSize - _minSize), generator(_generator)
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eoInitVariableLength(unsigned _minSize, unsigned _maxSize, Gen _generator = Gen())
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: offset(_minSize), extent(_maxSize - _minSize), generator(_generator)
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{
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if (_minSize >= _maxSize)
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throw logic_error("eoInitVariableLength: minSize larger or equal to maxSize");
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@ -111,7 +119,7 @@ class eoInitAdaptor : public eoMonOp<EOT>
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return true;
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}
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private :
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eoInit<EOT>& init;
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};
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118
eo/src/eoSTLFunctor.h
Normal file
118
eo/src/eoSTLFunctor.h
Normal file
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@ -0,0 +1,118 @@
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// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
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//-----------------------------------------------------------------------------
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// eoSTLFunctor.h
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// (c) Maarten Keijzer 2001
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/*
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This library is free software; you can redistribute it and/or
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modify it under the terms of the GNU Lesser General Public
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License as published by the Free Software Foundation; either
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version 2 of the License, or (at your option) any later version.
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This library is distributed in the hope that it will be useful,
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but WITHOUT ANY WARRANTY; without even the implied warranty of
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MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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Lesser General Public License for more details.
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You should have received a copy of the GNU Lesser General Public
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License along with this library; if not, write to the Free Software
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Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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Contact: todos@geneura.ugr.es, http://geneura.ugr.es
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Marc.Schoenauer@polytechnique.fr
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mak@dhi.dk
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*/
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//-----------------------------------------------------------------------------
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#ifndef _eoSTLFunctor_H
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#define _eoSTLFunctor_H
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#include "eoFunctor.h"
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/**
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Generic set of classes that wrap an eoF, eoUF or eoBF so that they have the
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copy semantics the STL functions usually require (i.e. they can be passed
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by value, rather than the EO standard pass by reference).
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The family consists of eoSTLF, eoSTLUF, eoSTLBF that modify eoF, eoUF and eoBF
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respectively
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*/
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template <class R>
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class eoSTLF
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{
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public:
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typedef R result_type;
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eoSTLF(eoF<R>& _f) : f(_f) {}
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R operator()(void)
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{
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return f();
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}
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private :
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eoF<R>& f;
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};
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#ifdef _MSVC
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/// specialization of void for MSVC users, unfortunately only works for eoF,
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/// as MSVC does not support partial specialization either
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template <>
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void eoSTLF<void>::operator()(void)
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{
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f();
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}
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#endif
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/**
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Generic set of classes that wrap an eoF, eoUF or eoBF so that they have the
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copy semantics the STL functions usually require (i.e. they can be passed
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by value, rather than the EO standard pass by reference).
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The family consists of eoSTLF, eoSTLUF, eoSTLBF that modify eoF, eoUF and eoBF
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respectively
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*/
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template <class A1, class R>
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class eoSTLUF : public std::unary_function<A1, R>
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{
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public:
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eoSTLUF(eoUF<A1,R>& _f) : f(_f) {}
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R operator()(A1 a)
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{
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return f(a);
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}
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private:
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eoUF<A1, R>& f;
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};
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/**
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Generic set of classes that wrap an eoF, eoUF or eoBF so that they have the
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copy semantics the STL functions usually require (i.e. they can be passed
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by value, rather than the EO standard pass by reference).
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The family consists of eoSTLF, eoSTLUF, eoSTLBF that modify eoF, eoUF and eoBF
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respectively
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*/
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template <class A1, class A2, class R>
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class eoSTLBF : public std::binary_function<A1, A2, R>
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{
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public:
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eoSTLBF(eoUF<A1,R>& _f) : f(_f) {}
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R operator()(A1 a1, A2 a2)
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{
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return f(a1, a2);
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}
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private:
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eoBF<A1, A2, R>& f;
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};
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// TODO: put automated wrappers here...
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#endif
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@ -43,12 +43,18 @@ class eoVector : public EO<FitT>, public std::vector<GeneType>
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typedef GeneType AtomType;
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typedef std::vector<GeneType> ContainerType;
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eoVector(unsigned size = 0, GeneType value = GeneType()) : EO<FitT>(), std::vector<GeneType>(size, value)
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{}
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/// copy ctor abstracting from the FitT
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template <class OtherFitnessType>
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eoVector(const eoVector<OtherFitnessType, GeneType>& _vec) : vector<GeneType>(_vec)
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{}
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// we can't have a Ctor from a vector, it would create ambiguity
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// with the copy Ctor
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void value(std::vector<GeneType> _v)
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void value(const std::vector<GeneType>& _v)
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{
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if (_v.size() != size())
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throw runtime_error("Wrong size in vector assignation in eoVector");
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@ -62,13 +62,13 @@ template <class FitT> class eoBit: public eoVector<FitT, bool>
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*/
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eoBit(unsigned size = 0, bool value = false):
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eoVector<FitT, bool>(size, value) {}
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/// My class name.
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string className() const
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{
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return "eoBit";
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string className() const
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{
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return "eoBit";
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}
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/**
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* To print me on a stream.
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* @param os The ostream.
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@ -77,10 +77,10 @@ template <class FitT> class eoBit: public eoVector<FitT, bool>
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{
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EO<FitT>::printOn(os);
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os << ' ';
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os << size() << ' ';
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os << size() << ' ';
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copy(begin(), end(), ostream_iterator<bool>(os));
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}
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/**
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* To read me from a stream.
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* @param is The istream.
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@ -95,7 +95,7 @@ template <class FitT> class eoBit: public eoVector<FitT, bool>
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if (is)
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{
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resize(bits.size());
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transform(bits.begin(), bits.end(), begin(),
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transform(bits.begin(), bits.end(), begin(),
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bind2nd(equal_to<char>(), '1'));
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}
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}
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@ -37,8 +37,8 @@ eoPop<eoBit<FitT> >& do_init_ga(eoParameterLoader& _parser, eoState& _state, Fi
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_parser.processParam(chromSize, "initialization");
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_parser.processParam(popSize, "initialization");
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eoInitFixedLength<EOT, boolean_generator> init(chromSize.value(), boolean_generator());
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eoBooleanGenerator gen;
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eoInitFixedLength<EOT> init(chromSize.value(), gen);
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// Let the state handle the memory
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eoPop<EOT>& pop = _state.takeOwnership(eoPop<EOT>());
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@ -26,8 +26,8 @@
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//-----------------------------------------------------------------------------
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#ifndef eoRND_GENERATORS_H
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#define eoRND_GENERATORS_H
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#ifndef eoRndGenerators_h
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#define eoRndGenerators_h
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#include "eoRNG.h"
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#include <eoFunctor.h>
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@ -37,9 +37,7 @@
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By popular demand re-introducing a base class for a family of
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random number generators. Derived members of this class are useful
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to initialize fixed/variable length genotypes that have an 'atomic' type
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in an indepent way (thus without employing any knowledge abou the problem domain).
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The only change from previous EO's us the use of the suffix EO. This to
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in an indepent way (thus without employing any knowledge about the problem domain).
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See derived classes eoUniformGenerator, eoBooleanGenerator, eoNormalGenerator and eoNegExpGenerator
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*/
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|
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@ -14,8 +14,8 @@ CXXFLAGS = -g
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###############################################################################
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check_PROGRAMS = t-eofitness t-eoRandom t-eobin t-eoStateAndParser t-eoCheckpointing \
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t-eoExternalEO t-eoSymreg t-eo t-eoReplacement t-eoSelect t-eoGenOp t-eoGA
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TESTS=run_tests
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t-eoExternalEO t-eoSymreg t-eo t-eoReplacement t-eoSelect t-eoGenOp t-eoGA t-eoVector
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TESTS=run_tests t-eoVector t-eoRandom
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# removing temporarily t-eoESFull
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#noinst_PROGRAMS = t-eofitness t-eobin t-eoStateAndParser t-eoCheckpointing t-eoExternalEO t-eoESFull t-eoSymreg t-eo t-eoReplacement t-eoSelect t-eoGenOp t-eoGA
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|
@ -101,6 +101,13 @@ t_eoGenOp_LDADD = $(LDADDS)
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|
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###############################################################################
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||||
|
||||
t_eoVector_SOURCES = t-eoVector.cpp
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t_eoVector_DEPENDENCIES = $(DEPS)
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t_eoVector_LDFLAGS = -lm
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t_eoVector_LDADD = $(LDADDS)
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###############################################################################
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|
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t_eoGA_SOURCES = t-eoGA.cpp binary_value.h
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t_eoGA_DEPENDENCIES = $(DEPS) $(top_builddir)/src/ga/libga.a
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t_eoGA_LDFLAGS = -lm
|
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|
|
|
|||
|
|
@ -3,8 +3,8 @@
|
|||
t-eoRandom.cpp
|
||||
Test program for random generator
|
||||
|
||||
(c) GeNeura Team, 1999
|
||||
|
||||
(c) GeNeura Team, 1999
|
||||
|
||||
This program is free software; you can redistribute it and/or modify
|
||||
it under the terms of the GNU General Public License as published by
|
||||
the Free Software Foundation; either version 2 of the License, or
|
||||
|
|
@ -18,19 +18,19 @@
|
|||
You should have received a copy of the GNU General Public License
|
||||
along with this program; if not, write to the Free Software
|
||||
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||
|
||||
|
||||
Contact: todos@geneura.ugr.es, http://geneura.ugr.es
|
||||
|
||||
|
||||
*/
|
||||
|
||||
/**
|
||||
CVS Info: $Date: 2001-02-18 04:34:57 $ $Author: evomarc $ $Revision: 1.9 $
|
||||
CVS Info: $Date: 2001-02-19 12:23:13 $ $Author: maartenkeijzer $ $Revision: 1.10 $
|
||||
*/
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
#include <iostream> // cout
|
||||
#include <strstream> // ostrstream, istrstream
|
||||
#include <fstream> // ostrstream, istrstream
|
||||
#include <utils/eoRndGenerators.h> // eoBin
|
||||
//#include <eoNormal.h>
|
||||
//#include <eoNegExp.h>
|
||||
|
|
@ -38,27 +38,28 @@ CVS Info: $Date: 2001-02-18 04:34:57 $ $Author: evomarc $ $Revision: 1.9 $
|
|||
//-----------------------------------------------------------------------------
|
||||
|
||||
main() {
|
||||
try{
|
||||
eoUniformGenerator<float> u1(-2.5,3.5);
|
||||
eoUniformGenerator<double> u2(0.0003, 0.0005 );
|
||||
eoUniformGenerator<unsigned long> u3( 100000U, 10000000U);
|
||||
eoUniformGenerator<double> u2(0.003, 0.05 );
|
||||
eoUniformGenerator<unsigned long> u3( 10000U, 10000000U);
|
||||
|
||||
eoNegExpGenerator<float> e1(3.5);
|
||||
eoNegExpGenerator<double> e2(0.003 );
|
||||
eoNegExpGenerator<long> e3( 10000U);
|
||||
/* cout << "n1\t\tn2\t\tn3\t\te1\t\te2\t\te3" << endl; */
|
||||
for ( unsigned i = 0; i < 100; i ++) {
|
||||
cout << "Uniform: " << u1() << "\t" << u2() << "\t" << u3() << endl;
|
||||
cout << "NegExp: " << e1() << "\t" << e2() << "\t" << e3() << endl;
|
||||
try
|
||||
{ // throws an error
|
||||
eoUniformGenerator<unsigned long> utest( 10000000U, 10000U);
|
||||
}
|
||||
}
|
||||
|
||||
catch (exception& e)
|
||||
{
|
||||
cout << "exception: " << e.what() << endl;;
|
||||
exit(EXIT_FAILURE);
|
||||
}
|
||||
catch (logic_error& e)
|
||||
{
|
||||
cout << e.what() << endl;
|
||||
}
|
||||
|
||||
ofstream os("t-eoRandom.out");
|
||||
|
||||
for ( unsigned i = 0; i < 100; i ++)
|
||||
{
|
||||
os << u1() << "\t" << u2() << "\t" << u3() << endl;
|
||||
}
|
||||
|
||||
return 0; // to avoid VC++ complaints
|
||||
|
||||
}
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
|
|
|
|||
|
|
@ -1,9 +1,11 @@
|
|||
/* -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
|
||||
|
||||
t-eoVectpr.cpp
|
||||
t-eoVector.cpp
|
||||
This program tests vector-like chromosomes
|
||||
(c) GeNeura Team, 1999, 2000
|
||||
|
||||
|
||||
Modified by Maarten Keijzer 2001
|
||||
|
||||
This program is free software; you can redistribute it and/or modify
|
||||
it under the terms of the GNU General Public License as published by
|
||||
the Free Software Foundation; either version 2 of the License, or
|
||||
|
|
@ -17,22 +19,26 @@
|
|||
You should have received a copy of the GNU General Public License
|
||||
along with this program; if not, write to the Free Software
|
||||
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||
|
||||
|
||||
Contact: todos@geneura.ugr.es, http://geneura.ugr.es
|
||||
|
||||
|
||||
*/
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
#include <iostream> // cout
|
||||
#include <strstream> // ostrstream, istrstream
|
||||
|
||||
#include <eoUniform.h>
|
||||
#include <assert.h>
|
||||
|
||||
#include <utils/eoRndGenerators.h>
|
||||
#include <eoVector.h> // eoVector
|
||||
#include <eo1dWDistance.h>
|
||||
#include <eoInit.h>
|
||||
#include <eoScalarFitness.h>
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
typedef eoVector<float> Chrom;
|
||||
typedef eoVector<eoMaximizingFitness, int> Chrom1;
|
||||
typedef eoVector<eoMinimizingFitness, int> Chrom2;
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
|
|
@ -40,17 +46,27 @@ main()
|
|||
{
|
||||
const unsigned SIZE = 4;
|
||||
|
||||
eoUniform<Chrom::Type> uniform(-1,1);
|
||||
// check if the appropriate ctor gets called
|
||||
Chrom1 chrom(SIZE, 5);
|
||||
|
||||
for (int i = 0; i < chrom.size(); ++i)
|
||||
{
|
||||
assert(chrom[i] == 5);
|
||||
}
|
||||
|
||||
eoUniformGenerator<Chrom1::AtomType> uniform(-1,1);
|
||||
eoInitFixedLength<Chrom1> init(SIZE, uniform);
|
||||
|
||||
init(chrom);
|
||||
|
||||
cout << chrom << endl;
|
||||
|
||||
Chrom2 chrom2(chrom);
|
||||
|
||||
cout << chrom2 << endl;
|
||||
|
||||
// eoInitVariableLength<Chrom1> initvar(
|
||||
|
||||
Chrom chrom1(SIZE,uniform), chrom2( SIZE, uniform);
|
||||
|
||||
cout << "chrom1: " << chrom1 << endl <<
|
||||
"chrom2: " << chrom2 << endl;
|
||||
|
||||
eo1dWDistance< float, float > chromDist( chrom1 );
|
||||
cout << "Distance from chrom1 to chrom2 " << chromDist.distance( chrom2 ) << endl;
|
||||
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
|
|
|
|||
|
|
@ -2,8 +2,8 @@
|
|||
|
||||
t-eobin.cpp
|
||||
This program tests the the binary cromosomes and several genetic operators
|
||||
(c) GeNeura Team, 1999
|
||||
|
||||
(c) GeNeura Team, 1999
|
||||
|
||||
This program is free software; you can redistribute it and/or modify
|
||||
it under the terms of the GNU General Public License as published by
|
||||
the Free Software Foundation; either version 2 of the License, or
|
||||
|
|
@ -17,9 +17,9 @@
|
|||
You should have received a copy of the GNU General Public License
|
||||
along with this program; if not, write to the Free Software
|
||||
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||
|
||||
|
||||
Contact: todos@geneura.ugr.es, http://geneura.ugr.es
|
||||
|
||||
|
||||
*/
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
|
|
@ -27,6 +27,7 @@
|
|||
#include <strstream> // ostrstream, istrstream
|
||||
#include <eo> // general EO
|
||||
#include <ga.h> // bitstring representation & operators
|
||||
#include <utils/eoRndGenerators.h>
|
||||
#include "binary_value.h"
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
|
|
@ -39,10 +40,11 @@ void main_function()
|
|||
{
|
||||
const unsigned SIZE = 8;
|
||||
unsigned i, j;
|
||||
eoBooleanGenerator gen;
|
||||
|
||||
Chrom chrom(SIZE), chrom2;
|
||||
chrom.fitness(binary_value(chrom)); chrom2.fitness(binary_value(chrom2));
|
||||
|
||||
|
||||
cout << "chrom: " << chrom << endl;
|
||||
chrom[0] = chrom[SIZE - 1] = true; chrom.fitness(binary_value(chrom));
|
||||
cout << "chrom: " << chrom << endl;
|
||||
|
|
@ -51,7 +53,7 @@ void main_function()
|
|||
chrom[0] = chrom[SIZE - 1] = true; chrom.fitness(binary_value(chrom));
|
||||
|
||||
cout << "chrom.className() = " << chrom.className() << endl;
|
||||
|
||||
|
||||
cout << "chrom: " << chrom << endl
|
||||
<< "chrom2: " << chrom2 << endl;
|
||||
|
||||
|
|
@ -67,10 +69,10 @@ void main_function()
|
|||
fill(chrom.begin(), chrom.end(), false);
|
||||
cout << "--------------------------------------------------"
|
||||
<< endl << "eoMonOp's aplied to .......... " << chrom << endl;
|
||||
|
||||
eoInitFixedLength<Chrom, boolean_generator>
|
||||
random(chrom.size(), boolean_generator());
|
||||
|
||||
|
||||
eoInitFixedLength<Chrom>
|
||||
random(chrom.size(), gen);
|
||||
|
||||
random(chrom); chrom.fitness(binary_value(chrom));
|
||||
cout << "after eoBinRandom ............ " << chrom << endl;
|
||||
|
||||
|
|
@ -149,10 +151,10 @@ void main_function()
|
|||
|
||||
eoProportionalSelect<Chrom> select;
|
||||
eoEvalFuncPtr<Chrom> eval(binary_value);
|
||||
|
||||
|
||||
eoSGA<Chrom> sga(select, xover, 0.8f, bitflip, 0.1f, eval, checkpoint);
|
||||
|
||||
eoInitFixedLength<Chrom, boolean_generator> init(16, boolean_generator());
|
||||
|
||||
eoInitFixedLength<Chrom> init(16, gen);
|
||||
eoPop<Chrom> pop(100, init);
|
||||
|
||||
apply<Chrom>(eval, pop);
|
||||
|
|
|
|||
Reference in a new issue