7a8ab5fb50
git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1489 331e1502-861f-0410-8da2-ba01fb791d7f
90 lines
2.9 KiB
C++
90 lines
2.9 KiB
C++
/***************************************************************************
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* Copyright (C) 2008 by Waldo Cancino *
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* wcancino@icmc.usp.br *
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* *
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* This program is free software; you can redistribute it and/or modify *
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* it under the terms of the GNU General Public License as published by *
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* the Free Software Foundation; either version 2 of the License, or *
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* (at your option) any later version. *
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* *
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* This program is distributed in the hope that it will be useful, *
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* but WITHOUT ANY WARRANTY; without even the implied warranty of *
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* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
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* GNU General Public License for more details. *
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* *
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* You should have received a copy of the GNU General Public License *
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* along with this program; if not, write to the *
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* Free Software Foundation, Inc., *
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* 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA. *
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***************************************************************************/
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#ifndef PHYLOMOEO_EVAL_H_
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#define PHYLOMOEO_EVAL_H_
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#include <PhyloMOEO.h>
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#include <parsimonycalculator.h>
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#include <likelihoodcalculator.h>
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//#include <peo>
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#include <iostream>
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#include <utils.h>
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extern ProbMatrixContainer *probmatrixs_ptr;
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class PhyloEval : public moeoEvalFunc < PhyloMOEO >
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{
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public:
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PhyloEval( ParsimonyCalculator &x, LikelihoodCalculator &y): parseval(x), likeval(y) { }
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void operator () (PhyloMOEO & _sol)
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{
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//cout << "hello im evaluating in the node " << getNodeRank() << endl;
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//if (_sol.invalidObjectiveVector())
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//{
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ObjectiveVector objVec;
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//if(! (_sol.get_tree().splits_valid() ) ) _sol.get_tree().calculate_splits();
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parseval.set_tree(_sol.get_tree());
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likeval.set_tree(_sol.get_tree());
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//objVec[0] = 1;
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//objVec[1] = 1;
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objVec[0] = parseval.fitch();
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objVec[1] = -likeval.calculate_likelihood();
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_sol.objectiveVector(objVec);
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probmatrixs_ptr->clear();
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//}
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}
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private:
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LikelihoodCalculator &likeval;
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ParsimonyCalculator &parseval;
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};
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class PhyloLikelihoodTimeEval : public moeoEvalFunc < PhyloMOEO >
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{
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public:
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PhyloLikelihoodTimeEval( LikelihoodCalculator &y): likeval(y) { }
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void operator () (PhyloMOEO & _sol)
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{
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ObjectiveVector objVec;
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likeval.set_tree(_sol.get_tree());
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struct timeval start;
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gettimeofday(&start,NULL);
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objVec[0] = -likeval.calculate_likelihood();
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struct timeval end;
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gettimeofday(&end,NULL);
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print_elapsed_time_short(&start,&end);
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_sol.objectiveVector(objVec);
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cout << endl;
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}
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private:
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LikelihoodCalculator &likeval;
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};
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#endif
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