For the tutorial the old Makefiles are saved as Makefile.simple in all the respective directories. Use generated config.h instead of command-line passing of preprocessor flags. Updated support files from current automake.
200 lines
5.9 KiB
C++
200 lines
5.9 KiB
C++
// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
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//-----------------------------------------------------------------------------
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// eoFileSnapshot.h
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// (c) Marc Schoenauer, Maarten Keijzer and GeNeura Team, 2001
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/*
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This library is free software; you can redistribute it and/or
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modify it under the terms of the GNU Lesser General Public
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License as published by the Free Software Foundation; either
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version 2 of the License, or (at your option) any later version.
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This library is distributed in the hope that it will be useful,
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but WITHOUT ANY WARRANTY; without even the implied warranty of
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MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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Lesser General Public License for more details.
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You should have received a copy of the GNU Lesser General Public
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License along with this library; if not, write to the Free Software
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Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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Contact: todos@geneura.ugr.es, http://geneura.ugr.es
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Marc.Schoenauer@polytechnique.fr
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mkeijzer@dhi.dk
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*/
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//-----------------------------------------------------------------------------
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#ifndef _eoFileSnapshot_h
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#define _eoFileSnapshot_h
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#include <config.h>
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#include <string>
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#include <fstream>
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#include <utils/eoParam.h>
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#include <utils/eoMonitor.h>
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#include <eoObject.h>
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/**
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Prints snapshots of fitnesses to a (new) file every N generations
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Assumes that the parameters that are passed to the monitor
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(method add in eoMonitor.h) are eoValueParam<std::vector<double> > of same size.
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A dir is created and one file per snapshot is created there -
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so you can later generate a movie!
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TODO: The counter is handled internally, but this should be changed
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so that you can pass e.g. an evalcounter (minor)
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I failed to templatize everything so that it can handle eoParam<std::vector<T> >
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for any type T, simply calling their getValue method ...
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*/
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class eoFileSnapshot : public eoMonitor
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{
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public :
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typedef std::vector<double> vDouble;
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typedef eoValueParam<std::vector<double> > vDoubleParam;
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eoFileSnapshot(std::string _dirname, unsigned _frequency = 1, std::string _filename = "gen",
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std::string _delim = " ", unsigned _counter = 0, bool _rmFiles = true):
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dirname(_dirname), frequency(_frequency),
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filename(_filename), delim(_delim), counter(_counter), boolChanged(true)
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{
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std::string s = "test -d " + dirname;
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int res = system(s.c_str());
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// test for (unlikely) errors
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if ( (res==-1) || (res==127) )
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throw std::runtime_error("Problem executing test of dir in eoFileSnapshot");
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// now make sure there is a dir without any genXXX file in it
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if (res) // no dir present
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{
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s = std::string("mkdir ")+dirname;
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}
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else if (!res && _rmFiles)
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{
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s = std::string("/bin/rm ")+dirname+ "/" + filename + "*";
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}
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else
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s = " ";
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system(s.c_str());
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// all done
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}
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/** accessor: has something changed (for gnuplot subclass)
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*/
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virtual bool hasChanged() {return boolChanged;}
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/** accessor to the counter: needed by the gnuplot subclass
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*/
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unsigned getCounter() {return counter;}
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/** accessor to the current filename: needed by the gnuplot subclass
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*/
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std::string getFileName() {return currentFileName;}
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/** sets the current filename depending on the counter
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*/
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void setCurrentFileName()
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{
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#ifdef HAVE_SSTREAM
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std::ostringstream oscount;
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oscount << counter;
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#else
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char buff[255];
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std::ostrstream oscount(buff, 254);
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oscount << counter;
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oscount << std::ends;
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#endif
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currentFileName = dirname + "/" + filename + oscount.str();
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}
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/** The operator(void): opens the std::ostream and calls the write method
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*/
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eoMonitor& operator()(void)
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{
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if (counter % frequency)
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{
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boolChanged = false; // subclass with gnuplot will do nothing
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counter++;
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return (*this);
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}
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counter++;
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boolChanged = true;
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setCurrentFileName();
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std::ofstream os(currentFileName.c_str());
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if (!os)
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{
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std::string str = "eoFileSnapshot: Could not open " + currentFileName;
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throw std::runtime_error(str);
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}
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return operator()(os);
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}
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/** The operator(): write on an std::ostream
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*/
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eoMonitor& operator()(std::ostream& _os)
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{
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const eoValueParam<std::vector<double> > * ptParam =
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static_cast<const eoValueParam<std::vector<double> >* >(vec[0]);
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const std::vector<double> v = ptParam->value();
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if (vec.size() == 1) // only one std::vector: -> add number in front
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{
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for (unsigned k=0; k<v.size(); k++)
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_os << k << " " << v[k] << "\n" ;
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}
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else // need to get all other std::vectors
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{
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std::vector<std::vector<double> > vv(vec.size());
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vv[0]=v;
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for (unsigned i=1; i<vec.size(); i++)
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{
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ptParam = static_cast<const eoValueParam<std::vector<double> >* >(vec[1]);
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vv[i] = ptParam->value();
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if (vv[i].size() != v.size())
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throw std::runtime_error("Dimension error in eoSnapshotMonitor");
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}
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for (unsigned k=0; k<v.size(); k++)
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{
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for (unsigned i=0; i<vec.size(); i++)
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_os << vv[i][k] << " " ;
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_os << "\n";
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}
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}
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return *this;
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}
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virtual const std::string getDirName() // for eoGnuPlot
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{ return dirname;}
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virtual const std::string baseFileName() // the title for eoGnuPlot
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{ return filename;}
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/// add checks whether it is a std::vector of doubles
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void add(const eoParam& _param)
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{
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if (!dynamic_cast<const eoValueParam<std::vector<double> >*>(&_param))
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{
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throw std::logic_error(std::string("eoFileSnapshot: I can only monitor std::vectors of doubles, sorry. The offending parameter name = ") + _param.longName());
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}
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eoMonitor::add(_param);
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}
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private :
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std::string dirname;
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unsigned frequency;
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std::string filename;
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std::string delim;
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unsigned int counter;
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std::string currentFileName;
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bool boolChanged;
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};
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#endif
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