- use single doxyfile instead of one per module - use a cleaner and more modern style - reorder sections to put details first - hide diagrams by default - remove deprecated doxygen variables - disable latex generation by default - fix some doc typos
303 lines
10 KiB
C++
303 lines
10 KiB
C++
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/*
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This library is free software; you can redistribute it and/or
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modify it under the terms of the GNU Lesser General Public
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License as published by the Free Software Foundation;
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version 2 of the License.
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This library is distributed in the hope that it will be useful,
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but WITHOUT ANY WARRANTY; without even the implied warranty of
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MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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Lesser General Public License for more details.
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You should have received a copy of the GNU Lesser General Public
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License along with this library; if not, write to the Free Software
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Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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© 2020 Thales group
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© 2022 Institut Pasteur
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Authors:
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Johann Dreo <johann.dreo@thalesgroup.com>
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*/
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#ifndef _eoAlgoFoundry_H_
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#define _eoAlgoFoundry_H_
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#include <vector>
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#include <variant>
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/** A vector of eoForge which hold an index.
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*
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* To be used in conjunction with a subclass of an eoAlgoFoundry,
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* where it can store all the alternative operators
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* and hold the link to the encoding. @see eoAlgoFoundryEA
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*
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* As with eoForgeVector, adding a managed operator
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* is done through public member variable's `add` method,
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* which takes the class name as template and its constructor's parameters
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* as arguments. For example:
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* @code
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* eoOperatorFoundry< eoSelectOne<EOT> > selectors;
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* selectors.add< eoStochTournamentSelect<EOT> >( 0.5 );
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* @endcode
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*
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* @warning If the managed constructor takes a reference YOU SHOULD ABSOLUTELY wrap it
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* in a `std::ref` when using `add` or `setup`, or it will silently be passed as a copy,
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* which would effectively disable any link between operators.
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*
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* @ingroup Core
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* @ingroup Foundry
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*/
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template<class Itf>
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class eoOperatorFoundry : public eoForgeVector< Itf >
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{
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public:
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/** Constructor
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*
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* @param encoding_index The slot position in the encodings, at which this operator is held.
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* @param always_reinstantiate If false, will enable cache for the forges in this container.
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*/
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eoOperatorFoundry(size_t encoding_index, bool always_reinstantiate = true ) :
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eoForgeVector<Itf>(always_reinstantiate),
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_index(encoding_index)
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{ }
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/** Returns the slot index at which this is registered.
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*/
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size_t index() const { return _index; }
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protected:
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//! Unique index in the eoAlgoFoundry.
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size_t _index;
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};
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/** A vector of eoForge which hold a scalar numeric value.
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*
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* To be used in conjunction with a subclass of an eoAlgoFoundry,
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* where it can hold a range of parameter values
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* and hold the link to the encoding. @see eoAlgoFoundryEA
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*
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* As with eoForgeScalar, managed parameters
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* are represented through a [min,max] range.
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*
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* For example:
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* @code
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* eoParameterFoundry< double > proba(0.0, 1.0);
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* @endcode
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*
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* @ingroup Core
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* @ingroup Foundry
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*/
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template<class Itf>
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class eoParameterFoundry : public eoForgeScalar< Itf >
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{
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static_assert(std::is_arithmetic<Itf>::value,
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"eoParameterFoundry should only be used on arithmetic types (i.e. integer or floating point types)");
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public:
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/** Underlying type of the parameter.
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*
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* @note You probably only want to use either `double` or `size_t`.
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* @see eoAlgoFoundry
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*/
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using Type = Itf;
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/** Constructor
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*
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* @param encoding_index The slot position in the encodings, at which this parameter is held.
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* @param min Minimium possible value.
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* @param max Maximum possible value.
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*/
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eoParameterFoundry(size_t encoding_index, Itf min, Itf max) :
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eoForgeScalar<Itf>(min, max),
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_index(encoding_index)
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{ }
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/** Returns the slot index at which this is registered.
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*/
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size_t index() const { return _index; }
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protected:
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//! Unique index in the eoAlgoFoundry.
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size_t _index;
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};
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/** Interface of a Foundry: a class that instantiate an eoAlgo on-the-fly, given a choice of its operators.
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*
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* The chosen operators are encoded in a vector of numbers.
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*
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* The foundry subclass should first be set up with sets of operators of the same interface,
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* held within an eoOperatorFoundry member.
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* @code
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* eoOperatorFoundry< eoSelectOne<EOT> > selectors;
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* @endcode
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*
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* In a second step, the operators to be used should be selected
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* by indicating their index, just like if the foundry was an array:
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* @code
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* foundry.select({size_t{0}, size_t{1}, size_t{2}});
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* // ^ ^ ^
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* // | | |
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* // | | + 3d operator
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* // | + 2d operator
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* // + 1st operator
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* @endcode
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*
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* If you don't (want to) recall the order of the operators in the encoding,
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* you can use the `index()` member of eoOperatorFoundry, for example:
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* @code
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* foundry.at(foundry.continuators.index()) = size_t{2}; // select the third continuator
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* @endcode
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*
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* Now, you must implement the foundry just like any eoAlgo, by using the eoPop interface:
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* @code
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* foundry(pop);
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* @endcode
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*
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* It will instantiate the needed operators (only) and the algorithm itself on-the-fly,
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* and then run it.
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*
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* @note The "encoding" which represent the selected options, figuring the actual meta-algorithm,
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* is a vector of `std::variant`, which can hold either a `size_t` or a `double`.
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* The first one is used to indicate the index of an operator class
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* *or* a parameter which is a size.
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* The second is used to store numerical parameters values.
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*
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* @note Thanks to the underlying eoOperatorFoundry, not all the added operators are instantiated.
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* Every instantiation is deferred upon actual use. That way, you can still reconfigure them
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* at any time with `eoForgeOperator::setup`, for example:
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* @code
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* foundry.selector.at(0).setup(0.5); // using constructor's arguments
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* @endcode
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*
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* @warning If the managed constructor takes a reference *YOU SHOULD ABSOLUTELY* wrap it
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* in a `std::ref` when using `add` or `setup`, or it will silently be passed as a copy,
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* which would effectively disable any link between operators.
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*
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* @ingroup Core
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* @ingroup Foundry
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* @ingroup Algorithms
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*/
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template<class EOT>
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class eoAlgoFoundry : public eoAlgo<EOT>
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{
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public:
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// We could use `std::any` instead of a variant,
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// but this would be more prone to errors from the end user, at the end.
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// Either the encoding is an index (of the operator within the list of instances)
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// either it's a real-valued parameter,
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// either it's a size.
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// So there's no need for more types (AFAIK).
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/** The type use to represent a selected option in the meta-algorithm.
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*
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* This can figure, either:
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* - the index of an operator in the list of possible ones,
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* - the actual value of a numeric paramater,
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* - the value of a parameter which is a size.
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*/
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using Encoding = std::variant<size_t, double>;
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/** The type use to store all selected options.
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*/
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using Encodings = std::vector<Encoding>;
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/** Constructor.
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*
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* @param nb_slots Number of operators or parameters that are assembled to make an algorithm.
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*/
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eoAlgoFoundry( size_t nb_slots ) :
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_size(nb_slots)
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{ }
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/** Select indices of all the operators.
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*
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* i.e. Select an algorithm to instantiate.
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*
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* @note You need to indicate the type of each item
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* if you want to call this with a brace-initialized vector.
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*
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* For example:
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* @code
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* foundry.select({ size_t{1}, double{0.5}, size_t{3} });
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* @endcode
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*
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* Or you can initialize the vector first:
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* @code
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* double crossover_rate = 0.5;
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* size_t crossover_oper = 3;
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* eoAlgoFoundry<EOT>::Encodings encoded_algo(foundry.size());
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* encoded_algo[foundry.crossover_rates.index()] = crossover_rate;
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* encoded_algo[foundry.crossover_opers.index()] = crossover_oper;
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* @endcode
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*/
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void select( Encodings encodings )
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{
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assert(encodings.size() == _size);
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_encodings = encodings;
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}
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/** Access to the encoding of the currently selected operator.
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*
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* @warning This returns a `std::variant`, which you should `std::get<T>`.
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*
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* For example:
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* @code
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* size_t opera_id = std::get<size_t>(foundry.at(2));
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* double param_id = std::get<double>(foundry.at(3));
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* @endcode
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*
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* @see rank, @see value or @see len to have automatic casting.
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*/
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Encoding & at(size_t i)
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{
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return _encodings.at(i);
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}
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/** Access to the currently selected ID of an operator.
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*/
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template<class OP>
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size_t rank(const OP& op)
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{
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return std::get<size_t>( at(op.index()) );
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}
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/** Access to the currently selected value of a numeric parameter.
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*/
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template<class OP>
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double value(const OP& param)
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{
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return std::get<double>( at(param.index()) );
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}
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/** Access to the currently selected value of a unsigned integer parameter.
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*/
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template<class OP>
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size_t len(const OP& param)
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{
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return std::get<size_t>( at(param.index()) );
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}
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/** Returns the number of slots that makes this algorithm.
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*/
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size_t size() const
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{
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return _size;
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}
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/** Return the underlying encoding vector.
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*/
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Encodings encodings() const
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{
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return _encodings;
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}
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protected:
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const size_t _size;
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std::vector<Encoding> _encodings;
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};
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#endif // _eoAlgoFoundry_H_
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