c64bf9fbfe
git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1465 331e1502-861f-0410-8da2-ba01fb791d7f
90 lines
3.1 KiB
C++
90 lines
3.1 KiB
C++
/***************************************************************************
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* Copyright (C) 2008 by Waldo Cancino *
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* wcancino@icmc.usp.br *
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* *
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* This program is free software; you can redistribute it and/or modify *
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* it under the terms of the GNU General Public License as published by *
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* the Free Software Foundation; either version 2 of the License, or *
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* (at your option) any later version. *
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* *
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* This program is distributed in the hope that it will be useful, *
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* but WITHOUT ANY WARRANTY; without even the implied warranty of *
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* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
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* GNU General Public License for more details. *
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* *
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* You should have received a copy of the GNU General Public License *
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* along with this program; if not, write to the *
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* Free Software Foundation, Inc., *
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* 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA. *
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***************************************************************************/
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#ifndef PHYLOMOEO_H_
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#define PHYLOMOEO_H_
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#include <moeo>
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#include "phylotreeIND.h"
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#include <iostream>
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class ObjectiveVectorTraits : public moeoObjectiveVectorTraits
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{
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public:
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static bool minimizing (int i)
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{
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return true;
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}
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static bool maximizing (int i)
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{
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return false;
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}
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static unsigned int nObjectives ()
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{
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return 2;
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}
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};
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typedef moeoRealObjectiveVector < ObjectiveVectorTraits > ObjectiveVector;
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class PhyloMOEO : public MOEO< ObjectiveVector, double, double >
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{
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private:
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phylotreeIND *tree;
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void copy(const PhyloMOEO &other)
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{
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if(tree!=NULL)delete tree;
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tree=NULL;
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if(other.tree!=NULL)tree = new phylotreeIND(other.get_tree());
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if(!other.invalidObjectiveVector())
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this->objectiveVector( other.objectiveVector() );
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else this->invalidateObjectiveVector();
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if(!other.invalidFitness())this->fitness( other.fitness() );
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else this->invalidateFitness();
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if(!other.invalidDiversity())this->diversity( other.diversity() );
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else this->invalidateDiversity();
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}
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public:
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PhyloMOEO() : MOEO < ObjectiveVector, double, double >() { tree = NULL; }
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PhyloMOEO(const PhyloMOEO &other) : MOEO < ObjectiveVector, double, double >(other) {
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tree=NULL;
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if(other.tree!=NULL)tree = new phylotreeIND(other.get_tree());
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}
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void set_tree_template(phylotreeIND &other) { if(tree!=NULL)delete tree; tree = other.clone(); };
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void set_random_tree(phylotreeIND &other) { if(tree!=NULL)delete tree; tree = other.randomClone(); };
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PhyloMOEO& operator= (const PhyloMOEO& other) {
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copy(other);
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return *this;
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}
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void readFrom (std::istream &_is)
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{
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string s;
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_is >> s;
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tree->read_newick2( s );
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}
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phylotreeIND & get_tree() const { return *tree; }
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~PhyloMOEO() { if(tree!=NULL)delete tree; }
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};
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#endif
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