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paradiseo/src/eo
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Filename Latest commit message Latest commit date
Adèle Harrissart 490e837f7a * New tree configuration of the project: 
.../
   ...           + -- EO
   |             |
   |             |
   +-- src ----- + -- EDO
   |             |
   |             |
   +-- test      + -- MO
   |             |
   |             |
   +-- tutorial  + -- MOEO
   |             |
   |             |
   +-- doc       + -- SMP
   |             |
   |             |
   ...           + -- EOMPI
                 |
                 |
                 + -- EOSERIAL

Question for current maintainers: ./README: new release?

Also:

* Moving out eompi & eoserial modules (issue #2).

* Correction of the errors when executing "make doc" command.

* Adding a solution for the conflicting headers problem (see the two CMake Cache
 Values: PROJECT_TAG & PROJECT_HRS_INSTALL_SUBPATH) (issue #1)

* Header inclusions:
        ** src: changing absolute paths into relative paths ('#include <...>' -> '#include "..."')
        ** test, tutorial: changing relative paths into absolute paths ('#include "..."' -> '#include <...>')

* Moving out some scripts from EDO -> to the root

* Add a new script for compilation and installation (see build_gcc_linux_install)

* Compilation with uBLAS library or EDO module: now ok

* Minor modifications on README & INSTALL files

* Comment eompi failed tests with no end

*** TODO: CPack (debian (DEB) & RedHat (RPM) packages) (issues #6 & #7) ***
2014-09-06 13:04:35 +02:00
..
contrib * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
do * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
es * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
ga * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
gp * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
other * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
pyeo * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
utils * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
apply.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
BuildConfig.cmake * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
CHANGELOG * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
CMakeLists.txt * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
config.h.cmake * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
ConfigureChecks.cmake * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
COPYING * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
EO.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eo.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoAlgo.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoBinaryFlight.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoBitParticle.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoBreed.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoCellularEasyEA.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoCloneOps.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoCombinedContinue.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoCombinedInit.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoConstrictedVariableWeightVelocity.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoConstrictedVelocity.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoContinue.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoCounter.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoCtrlCContinue.cpp * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoCtrlCContinue.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoDetSelect.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoDetTournamentSelect.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoDistribUpdater.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoDistribution.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoDualFitness.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoEasyEA.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoEasyPSO.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoEDA.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoEvalContinue.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoEvalCounterThrowException.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoEvalDump.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoEvalFunc.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoEvalFuncCounter.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoEvalFuncCounterBounder.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoEvalFuncPtr.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoEvalKeepBest.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoEvalTimeThrowException.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoEvalUserTimeThrowException.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoExceptions.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoExtendedVelocity.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoFactory.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoFitContinue.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoFitnessScalingSelect.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoFixedInertiaWeightedVelocity.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoFlight.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoFlOrBinOp.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoFlOrMonOp.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoFlOrQuadOp.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoFunctor.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoFunctorStore.cpp * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoFunctorStore.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoG3Replacement.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoGaussRealWeightUp.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoGenContinue.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoGeneralBreeder.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoGenOp.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoInit.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoInitializer.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoInt.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoIntegerVelocity.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoInvalidateOps.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoInvertedContinue.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoLinearDecreasingWeightUp.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoLinearFitScaling.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoLinearTopology.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoMerge.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoMergeReduce.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoMGGReplacement.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoNDSorting.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoNeighborhood.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoObject.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoOneToOneBreeder.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoOp.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoOpContainer.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoOpSelMason.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoOrderXover.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoParticleBestInit.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoParticleFullInitializer.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoPerf2Worth.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoPeriodicContinue.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoPersistent.cpp * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoPersistent.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoPop.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoPopEvalFunc.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoPopulator.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoPrintable.cpp * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoPrintable.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoPropGAGenOp.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoProportionalCombinedOp.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoProportionalSelect.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoPSO.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoRandomRealWeightUp.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoRandomSelect.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoRanking.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoRankingSelect.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoRankMuSelect.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoRealBoundModifier.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoRealParticle.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoReduce.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoReduceMerge.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoReduceMergeReduce.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoReduceSplit.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoReplacement.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoRingTopology.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoScalarFitness.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoScalarFitnessAssembled.cpp * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoScalarFitnessAssembled.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoSecondsElapsedContinue.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoSelect.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoSelectFactory.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoSelectFromWorth.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoSelectMany.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoSelectNumber.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoSelectOne.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoSelectPerc.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoSequentialSelect.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoSGA.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoSGAGenOp.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoSGATransform.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoSharing.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoSharingSelect.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoShiftMutation.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoSigBinaryFlight.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoSIGContinue.cpp * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoSIGContinue.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoSimpleEDA.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoSocialNeighborhood.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoStandardFlight.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoStandardVelocity.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoStarTopology.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoSteadyFitContinue.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoSTLFunctor.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoStochasticUniversalSelect.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoStochTournamentSelect.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoSurviveAndDie.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoSwapMutation.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoSyncEasyPSO.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoTimeContinue.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoTopology.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoTransform.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoTruncatedSelectMany.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoTruncatedSelectOne.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoTruncSelect.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoTwoOptMutation.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoVariableInertiaWeightedVelocity.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoVariableLengthCrossover.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoVariableLengthMutation.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoVector.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoVectorParticle.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoVelocity.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoVelocityInit.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
eoWeightUpdater.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
es.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
ga.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
INSTALL * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
install_symlink.py.cmake * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
LICENSE * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
NEWS * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
pc.cmake * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
PKGBUILD.cmake * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
PO.h * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
README * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
THANKS * New tree configuration of the project: 2014-09-06 13:04:35 +02:00
ToDo * New tree configuration of the project: 2014-09-06 13:04:35 +02:00

README

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		      EO README FILE

=======================================================================
	 check latest news at http://eodev.sourceforge.net/
=======================================================================

Welcome to EO, the Evolving Objects library.

The latest news about EO can be found on the sourceforge repository at
    http://eodev.sourceforge.net/

In case of any problem, please e-mail us at
    eodev-main@lists.sourceforge.net

To get started, take a look at the tutorial, starting with
    ./tutorial/html/eoTutorial.html

The easiest way to start programming a new genome with all EO
evolution engines handy is to create a new standalone EO project from
the tutorial/Templates/ directory. Read Lesson 5 of the tutorial for
an introduction ;)


==================================================================
		      BUILDING EO
==================================================================
The basic installation procedure goes the following:

Go to the "eo/" and run one of the "build_*" script. 

Using the "build_gcc_linux_release" script is generally what you want. The
binaries are then located in the "release/" directory.

Now you should probably go to the tutorial and start learning about EO
features and programming.

In case of problems or if you want advanced options, you can read the INSTALL file.

===================================================================
		       DIRECTORY STRUCTURE
===================================================================
After unpacking the archive file, you should end up with the following
structure:

.../                            the MAIN EO dir, created when unpacking
   |
   +-- src                    SOURCE dir. Contains most EO .h files
   |   |
   |   +- utils          general utilities (e.g. RNG-related source files)
   |   |
   |   +- ga             bistring-genotypes source files
   |   |
   |   +- es             real-valued-genotypes source files
   |   |
   |   +- gp             Genetic Programming source files
   |   |
   |   +- obsolete       files from old versions - for upward compatibility
   |
   |
   |
   +-- tutorial               TUTORIAL dir (indeed :-)
   |   |
   |   +- html           all html files - start by browsing index.html
   |   |
   |   +- LessonX        for X=1, 2, 3, ... : example of increasing complexity
   |
   |
   |
   +-- doc                    DOCUMENTATION dir (generated by Doxygen)
   |   |
   |   +- html             HTML files - start at index.html (see also tutorial)
   |   |
   |   +- latex            latex files - use to generate Poatscript doc.
   |   |
   |   +- man              Unix man format documentation
   |
   |
   +-- test                   TEST files - for debugging purposes only
   |
   |
   +-- app                    APPLICATIONS - one dir per separate application
   |   |
   |   +- gprop            GA/backpropagation for neural nets
   |   |
   |   +- mastermind       the wellknown MasterMind game
   |
   |
   +-- win                    WINDOWS dir: project files for MS/VC5+