490e837f7a
.../
... + -- EO
| |
| |
+-- src ----- + -- EDO
| |
| |
+-- test + -- MO
| |
| |
+-- tutorial + -- MOEO
| |
| |
+-- doc + -- SMP
| |
| |
... + -- EOMPI
|
|
+ -- EOSERIAL
Question for current maintainers: ./README: new release?
Also:
* Moving out eompi & eoserial modules (issue #2).
* Correction of the errors when executing "make doc" command.
* Adding a solution for the conflicting headers problem (see the two CMake Cache
Values: PROJECT_TAG & PROJECT_HRS_INSTALL_SUBPATH) (issue #1)
* Header inclusions:
** src: changing absolute paths into relative paths ('#include <...>' -> '#include "..."')
** test, tutorial: changing relative paths into absolute paths ('#include "..."' -> '#include <...>')
* Moving out some scripts from EDO -> to the root
* Add a new script for compilation and installation (see build_gcc_linux_install)
* Compilation with uBLAS library or EDO module: now ok
* Minor modifications on README & INSTALL files
* Comment eompi failed tests with no end
*** TODO: CPack (debian (DEB) & RedHat (RPM) packages) (issues #6 & #7) ***
130 lines
3 KiB
Objective-C
Executable file
130 lines
3 KiB
Objective-C
Executable file
/* eoVirus.h
|
|
|
|
(c) GeNeura Team 2001, Marc Schoenauer 2000
|
|
|
|
This library is free software; you can redistribute it and/or modify
|
|
it under the terms of the GNU Lesser General Public License as
|
|
published by the Free Software Foundation; either version 2 of the
|
|
License, or (at your option) any later version.
|
|
|
|
This library is distributed in the hope that it will be useful, but
|
|
WITHOUT ANY WARRANTY; without even the implied warranty of
|
|
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
|
|
Lesser General Public License for more details.
|
|
|
|
You should have received a copy of the GNU Lesser General Public
|
|
License along with this library; if not, write to the Free Software
|
|
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
|
|
USA
|
|
|
|
Contact: todos@geneura.ugr.es, http://geneura.ugr.es
|
|
Marc.Schoenauer@polytechnique.fr
|
|
*/
|
|
|
|
|
|
#ifndef eoVirus_h
|
|
#define eoVirus_h
|
|
|
|
#include <iostream>
|
|
#include <functional>
|
|
#include <string>
|
|
#include <vector>
|
|
|
|
#include "ga/eoBit.h"
|
|
|
|
/**
|
|
\defgroup bitstring
|
|
|
|
Various functions for a bitstring representation
|
|
*/
|
|
|
|
/** Implementation of bitstring chromosome.
|
|
|
|
@class eoBit eoBit.h ga/eoBit.h
|
|
@ingroup bitstring
|
|
|
|
Based on STL's vector<bool> specialization.
|
|
*/
|
|
template <class FitT>
|
|
class eoVirus : public eoBit<FitT>
|
|
{
|
|
public:
|
|
|
|
using eoBit<FitT>::begin;
|
|
using eoBit<FitT>::end;
|
|
using eoBit<FitT>::size;
|
|
|
|
|
|
/** (Default) Constructor
|
|
|
|
@param size Size of the binary std::string.
|
|
*/
|
|
eoVirus(unsigned _size = 0, bool _value = false, bool _virValue = false):
|
|
eoBit<FitT>(_size, _value), virus( _size, _virValue) {}
|
|
|
|
/// My class name
|
|
virtual std::string className() const {
|
|
return "eoVirus";
|
|
}
|
|
|
|
/// Access to virus features
|
|
void virResize( unsigned _i ) {
|
|
virus.resize(_i );
|
|
}
|
|
|
|
/// Access to virus features
|
|
bool virusBit( unsigned _i ) const {
|
|
return virus[_i];
|
|
}
|
|
|
|
/// Change virus features
|
|
void virusBitSet( unsigned _i, bool _bit ) {
|
|
virus[_i ] = _bit;
|
|
}
|
|
|
|
/** To print me on a stream.
|
|
|
|
@param os The ostream.
|
|
*/
|
|
virtual void printOn(std::ostream& os) const {
|
|
EO<FitT>::printOn(os);
|
|
os << ' ';
|
|
os << size() << ' ';
|
|
std::copy(begin(), end(), std::ostream_iterator<bool>(os));
|
|
std::cout << std::endl;
|
|
std::copy(virus.begin(), virus.end(), std::ostream_iterator<bool>(os));
|
|
}
|
|
|
|
/** To read me from a stream.
|
|
|
|
@param is The istream.
|
|
*/
|
|
virtual void readFrom(std::istream& is){
|
|
eoBit<FitT>::readFrom(is);
|
|
unsigned s;
|
|
is >> s;
|
|
std::string bits;
|
|
is >> bits;
|
|
if (is) {
|
|
virus.resize(bits.size());
|
|
std::transform(bits.begin(), bits.end(), virus.begin(),
|
|
std::bind2nd(std::equal_to<char>(), '1'));
|
|
}
|
|
}
|
|
|
|
|
|
private:
|
|
|
|
std::vector<bool> virus;
|
|
};
|
|
|
|
//-----------------------------------------------------------------------------
|
|
|
|
#endif //eoBit_h
|
|
|
|
|
|
// Local Variables:
|
|
// coding: iso-8859-1
|
|
// mode: C++
|
|
// c-file-style: "Stroustrup"
|
|
// End:
|