490e837f7a
.../
... + -- EO
| |
| |
+-- src ----- + -- EDO
| |
| |
+-- test + -- MO
| |
| |
+-- tutorial + -- MOEO
| |
| |
+-- doc + -- SMP
| |
| |
... + -- EOMPI
|
|
+ -- EOSERIAL
Question for current maintainers: ./README: new release?
Also:
* Moving out eompi & eoserial modules (issue #2).
* Correction of the errors when executing "make doc" command.
* Adding a solution for the conflicting headers problem (see the two CMake Cache
Values: PROJECT_TAG & PROJECT_HRS_INSTALL_SUBPATH) (issue #1)
* Header inclusions:
** src: changing absolute paths into relative paths ('#include <...>' -> '#include "..."')
** test, tutorial: changing relative paths into absolute paths ('#include "..."' -> '#include <...>')
* Moving out some scripts from EDO -> to the root
* Add a new script for compilation and installation (see build_gcc_linux_install)
* Compilation with uBLAS library or EDO module: now ok
* Minor modifications on README & INSTALL files
* Comment eompi failed tests with no end
*** TODO: CPack (debian (DEB) & RedHat (RPM) packages) (issues #6 & #7) ***
145 lines
4 KiB
C++
Executable file
145 lines
4 KiB
C++
Executable file
/*
|
|
ViruOp.h
|
|
(c) GeNeura Team 2001, Marc Schoenauer 2000
|
|
|
|
This library is free software; you can redistribute it and/or
|
|
modify it under the terms of the GNU Lesser General Public
|
|
License as published by the Free Software Foundation; either
|
|
version 2 of the License, or (at your option) any later version.
|
|
|
|
This library is distributed in the hope that it will be useful,
|
|
but WITHOUT ANY WARRANTY; without even the implied warranty of
|
|
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
|
|
Lesser General Public License for more details.
|
|
|
|
You should have received a copy of the GNU Lesser General Public
|
|
License along with this library; if not, write to the Free Software
|
|
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
|
|
|
Contact: eodev-main@lists.sourceforge.net
|
|
old contact: todos@geneura.ugr.es, http://geneura.ugr.es
|
|
Marc.Schoenauer@polytechnique.fr
|
|
*/
|
|
|
|
#ifndef VirusOp_h
|
|
#define VirusOp_h
|
|
|
|
//-----------------------------------------------------------------------------
|
|
|
|
#include <iostream> // ostream, istream
|
|
#include <functional> // bind2nd
|
|
#include <string> // std::string
|
|
|
|
#include <utils/eoRNG.h>
|
|
#include "eoVirus.h"
|
|
|
|
/** VirusBitFlip --> changes 1 bit
|
|
*/
|
|
|
|
template<class FitT>
|
|
class VirusBitFlip: public eoMonOp<eoVirus<FitT> > {
|
|
public:
|
|
/// The class name.
|
|
virtual std::string className() const { return "VirusBitFlip"; };
|
|
|
|
/** Change one bit.
|
|
|
|
@param chrom The cromosome which one bit is going to be changed.
|
|
*/
|
|
bool operator()(eoVirus<FitT>& _chrom) {
|
|
unsigned i = eo::rng.random(_chrom.size());
|
|
_chrom.virusBitSet(i, _chrom.virusBit(i) ? false : true );
|
|
return true;
|
|
}
|
|
};
|
|
|
|
|
|
template<class FitT>
|
|
class VirusMutation: public eoMonOp<eoVirus<FitT> > {
|
|
public:
|
|
/// The class name.
|
|
virtual std::string className() const { return "VirusMutation"; };
|
|
|
|
/** Change one bit.
|
|
|
|
@param chrom The cromosome which one bit is going to be changed.
|
|
*/
|
|
bool operator()(eoVirus<FitT>& _chrom) {
|
|
// Search for virus bits
|
|
std::vector<unsigned> bitsSet;
|
|
for ( unsigned i = 0; i < _chrom.size(); i ++ ) {
|
|
if ( _chrom.virusBit(i) ) {
|
|
bitsSet.push_back( i );
|
|
}
|
|
}
|
|
if ( !bitsSet.size() ) {
|
|
return false;
|
|
}
|
|
unsigned flipSite = eo::rng.random(bitsSet.size());
|
|
unsigned flipValue = bitsSet[ flipSite ];
|
|
_chrom[flipValue] = _chrom[flipValue] ? false : true;
|
|
return true;
|
|
}
|
|
};
|
|
|
|
|
|
/// Works for 1-bit virus; shifts the one to the right or left
|
|
template<class FitT>
|
|
class VirusShiftMutation: public eoMonOp<eoVirus<FitT> >
|
|
{
|
|
public:
|
|
|
|
/// Ctor
|
|
VirusShiftMutation( ) {};
|
|
|
|
/// The class name.
|
|
virtual std::string className() const { return "VirusShiftMutation"; };
|
|
|
|
/** Change one bit.
|
|
|
|
@param chrom The cromosome which one bit is going to be changed.
|
|
*/
|
|
bool operator()(eoVirus<FitT>& _chrom) {
|
|
// Search for virus bits
|
|
eoBooleanGenerator gen;
|
|
for ( unsigned i = 0; i < _chrom.size(); i ++ ) {
|
|
if ( _chrom.virusBit(i) ) {
|
|
if ( gen() ) {
|
|
if ( i + 1 < _chrom.size() ) {
|
|
_chrom.virusBitSet(i+1,true);
|
|
_chrom.virusBitSet(i, false);
|
|
}
|
|
} else {
|
|
if ( i > 1 ) {
|
|
_chrom.virusBitSet(i-1,true);
|
|
_chrom.virusBitSet(i, false);
|
|
}
|
|
}
|
|
}
|
|
}
|
|
return true;
|
|
}
|
|
};
|
|
|
|
|
|
template<class FitT>
|
|
class VirusTransmission: public eoBinOp<eoVirus<FitT> > {
|
|
public:
|
|
/// The class name.
|
|
virtual std::string className() const { return "VirusTransmission"; };
|
|
|
|
/**
|
|
* Change one bit.
|
|
* @param _chrom The "receptor" chromosome
|
|
* @param _chrom2 The "donor" chromosome
|
|
*/
|
|
bool operator()(eoVirus<FitT>& _chrom,const eoVirus<FitT>& _chrom2) {
|
|
// Search for virus bits
|
|
for ( unsigned i = 0; i < _chrom.size(); i ++ ) {
|
|
_chrom.virusBitSet(i, _chrom2.virusBit(i) );
|
|
}
|
|
return true;
|
|
}
|
|
};
|
|
|
|
#endif //VirusOp_h
|