121545e6d7
git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1601 331e1502-861f-0410-8da2-ba01fb791d7f
59 lines
No EOL
1.5 KiB
C++
59 lines
No EOL
1.5 KiB
C++
#include <eo>
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#include <phylotreeIND.h>
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using namespace std;
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gsl_rng *rn2;
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RandomNr *rn;
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//Sequences *seq;
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long seed;
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//vector<phylotreeIND> arbores;
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string datafile, path;
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phylotreeIND *templatetree_ptr;
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int main(int argc, char *argv[])
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{
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// measures execution time
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eoParser parser(argc, argv);
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datafile = parser.createParam(string(), "data", "Datafile", 'd',"Param").value();
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path = parser.createParam(string(), "path", "Treefile", 'p',"Param").value();
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cout << "\n\nReading Sequence Datafile..." << path+datafile;
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datafile = path+datafile;
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Sequences seq6(datafile.c_str());
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// Sequences seq7("/home/wcancino/experimentos/PhyloMOEA_0.2/omp_tests/datasets/TEST.500_5000");
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cout << " done.\n";
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// calculate datafile
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cout << "calculating pattersn..." << endl;
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seq6.calculate_patterns();
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seq6.calculate_frequences();
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gsl_rng *rn2 = gsl_rng_alloc(gsl_rng_default);
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RandomNr *rn = new RandomNr(time(NULL));
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phylotreeIND templatetree6( rn, seq6, rn2);
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phylotreeIND *test = templatetree6.randomClone();
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phylotreeIND test2(*test);
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test->calculate_splits4();
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test2.calculate_splits4();
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test->export_subtree(test2);
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//test2.TBR();
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//test2.printNewick(cout);
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cout << "calculando splits..." << endl;
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test2.calculate_splits4();
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//test->print_splits_2();
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cout << "calculando distance..." << endl;
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cout << "distance " << test->compare_topology_4(test2) << endl;
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cout << "calculando distance..." << endl;
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cout << "distance " << test->compare_topology_2(test2) << endl;
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// of.close();
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gsl_rng_free(rn2);
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// delete probmatrixs;
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delete rn;
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return 0;
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} |