diff --git a/branches/paradiseo-moeo-1.0/.cdtproject b/branches/paradiseo-moeo-1.0/.cdtproject new file mode 100644 index 000000000..7531e2ca2 --- /dev/null +++ b/branches/paradiseo-moeo-1.0/.cdtproject @@ -0,0 +1,507 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + \ No newline at end of file diff --git a/branches/paradiseo-moeo-1.0/.project b/branches/paradiseo-moeo-1.0/.project new file mode 100644 index 000000000..1a748c39d --- /dev/null +++ b/branches/paradiseo-moeo-1.0/.project @@ -0,0 +1,86 @@ + + + paradiseo-moeo + + + + + + org.eclipse.cdt.make.core.makeBuilder + clean,full,incremental, + + + org.eclipse.cdt.make.core.append_environment + true + + + org.eclipse.cdt.make.core.enableCleanBuild + true + + + org.eclipse.cdt.make.core.build.command + make + + + org.eclipse.cdt.make.core.useDefaultBuildCmd + true + + + org.eclipse.cdt.make.core.build.target.auto + all + + + org.eclipse.cdt.make.core.stopOnError + false + + + org.eclipse.cdt.make.core.build.location + + + + org.eclipse.cdt.make.core.build.target.inc + all + + + org.eclipse.cdt.make.core.build.arguments + + + + org.eclipse.cdt.core.errorOutputParser + org.eclipse.cdt.core.MakeErrorParser;org.eclipse.cdt.core.GCCErrorParser;org.eclipse.cdt.core.GASErrorParser;org.eclipse.cdt.core.GLDErrorParser;org.eclipse.cdt.core.VCErrorParser; + + + org.eclipse.cdt.make.core.enableAutoBuild + false + + + org.eclipse.cdt.make.core.environment + + + + org.eclipse.cdt.make.core.enabledIncrementalBuild + true + + + org.eclipse.cdt.make.core.build.target.clean + clean + + + org.eclipse.cdt.make.core.enableFullBuild + true + + + + + org.eclipse.cdt.make.core.ScannerConfigBuilder + + + + + + org.eclipse.cdt.core.cnature + org.eclipse.cdt.make.core.makeNature + org.eclipse.cdt.make.core.ScannerConfigNature + org.eclipse.cdt.core.ccnature + + diff --git a/branches/paradiseo-moeo-1.0/.settings/org.eclipse.cdt.core.prefs b/branches/paradiseo-moeo-1.0/.settings/org.eclipse.cdt.core.prefs new file mode 100644 index 000000000..8aa1feb88 --- /dev/null +++ b/branches/paradiseo-moeo-1.0/.settings/org.eclipse.cdt.core.prefs @@ -0,0 +1,3 @@ +#Fri Nov 24 13:29:51 GMT+01:00 2006 +eclipse.preferences.version=1 +indexerId=org.eclipse.cdt.core.fastIndexer diff --git a/branches/paradiseo-moeo-1.0/.settings/org.eclipse.ltk.core.refactoring.prefs b/branches/paradiseo-moeo-1.0/.settings/org.eclipse.ltk.core.refactoring.prefs new file mode 100644 index 000000000..80868204f --- /dev/null +++ b/branches/paradiseo-moeo-1.0/.settings/org.eclipse.ltk.core.refactoring.prefs @@ -0,0 +1,3 @@ +#Fri Nov 24 13:33:38 GMT+01:00 2006 +org.eclipse.ltk.core.refactoring.enable.project.refactoring.history=false +eclipse.preferences.version=1 diff --git a/branches/paradiseo-moeo-1.0/AUTHORS b/branches/paradiseo-moeo-1.0/AUTHORS new file mode 100644 index 000000000..ffa751632 --- /dev/null +++ b/branches/paradiseo-moeo-1.0/AUTHORS @@ -0,0 +1,4 @@ +Arnaud Liefooghe +Thomas Legrand +Sébastien Cahon +Abdelhakim Deneche diff --git a/branches/paradiseo-moeo-1.0/ChangeLog b/branches/paradiseo-moeo-1.0/ChangeLog new file mode 100644 index 000000000..e69de29bb diff --git a/branches/paradiseo-moeo-1.0/Makefile.am b/branches/paradiseo-moeo-1.0/Makefile.am new file mode 100644 index 000000000..f82d6f279 --- /dev/null +++ b/branches/paradiseo-moeo-1.0/Makefile.am @@ -0,0 +1,16 @@ +SUBDIRS = docs src tutorials + +clean_all: clean_aux clean_doc + -@make clean + -@(rm -rf aclocal.m4 autom4te.cache configure config.* CO* dep* INST* install-sh miss* mkins* Makefile Makefile.in;\ + cd docs; rm -rf Makefile Makefile.in *.doxytag; cd ../src ; rm -rf Makefile Makefile.in; cd ../tutorials; rm -rf Makefile Makefile.in;\ + cd lesson1; rm -rf .deps/ Makefile Makefile.in) + +clean_aux: + -@find . \( -name "*~" -o -name "*.old" -o -name "#*" -o -name "*.bak" \) -print -exec rm -rf \{\} \; + +doc: + -@(cd docs; make doc) + +clean_doc: + -@(cd docs; make clean-local) diff --git a/branches/paradiseo-moeo-1.0/NEWS b/branches/paradiseo-moeo-1.0/NEWS new file mode 100644 index 000000000..31fe551dc --- /dev/null +++ b/branches/paradiseo-moeo-1.0/NEWS @@ -0,0 +1,7 @@ +* release 0.1 + +# Local Variables: +# coding: iso-8859-1 +# mode: text +# fill-column: 80 +# End: diff --git a/branches/paradiseo-moeo-1.0/README b/branches/paradiseo-moeo-1.0/README new file mode 100644 index 000000000..856657dfd --- /dev/null +++ b/branches/paradiseo-moeo-1.0/README @@ -0,0 +1,64 @@ + PARADISEO-MOEO README FILE +======================================================================= + check latest news at http://paradiseo.gforge.inria.fr/ +======================================================================= + +Welcome to ParadisEO-MOEO, the Multi-Objective Evolving Objects library. +The latest news about ParadisEO-MOEO can be found on the gforge repository at +http://paradiseo.gforge.inria.fr/ +In case of any problem, please e-mail us at +paradiseo-help@lists.gforge.inria.fr + + +================================================================== + BUILDING PARADISEO-MOEO +================================================================== +The basic installation procedure goes the following: + +Go to your build-directory and run + > $(SRCDIR)/configure + > make + > make doc + +where $(SRCDIR) is the top-level source directory of PARADISEO-MOEO, +i.e. where the sources were unpacked. + +In case of problems, you can read the INSTALL file - but remember this +is a standard installation file from GNU and that it contains nothing +specific about PARADISEO-MOEO. + +To clean everything, the simply run + > make clean_all + +=================================================================== + DIRECTORY STRUCTURE +=================================================================== +After unpacking the archive file, you should end up with the following +structure: + +.../ The main PARADISEO-MOEO directory, created when unpacking. + | + +-- src SOURCE directory Contains most PARADISEO-MOEO .h files. + | + +-- docs DOCUMENTATION directory (generated by Doxygen). + | | + | +- html HTML files - start at index.html. + | | + | +- latex latex files - use to generate Postcript doc. + | | + | +- man Unix man format documentation. + | + | + +-- tutorials APPLICATIONS - one directory per separate application. + | + +-- lesson1 A bi-objective flow-shop problem example with main algorithms. + | | + | +-benchmarks Instance files for testing. + | + |-- lesson2 Implement NSGA-II for the SCH1 problem. + +=================================================================== + NOTES +=================================================================== + +Mailing list : paradiseo-help@lists.gforge.inria.fr diff --git a/branches/paradiseo-moeo-1.0/autogen.sh b/branches/paradiseo-moeo-1.0/autogen.sh new file mode 100644 index 000000000..293b7972e --- /dev/null +++ b/branches/paradiseo-moeo-1.0/autogen.sh @@ -0,0 +1,148 @@ +#!/bin/sh +# Run this to generate all the initial makefiles, etc. + +srcdir=`dirname $0` +PKG_NAME="the package." + +DIE=0 + +(autoconf --version) < /dev/null > /dev/null 2>&1 || { + echo + echo "**Error**: You must have \`autoconf' installed to." + echo "Download the appropriate package for your distribution," + echo "or get the source tarball at ftp://ftp.gnu.org/pub/gnu/" + DIE=1 +} + +(grep "^AM_PROG_LIBTOOL" $srcdir/configure.in >/dev/null) && { + (libtool --version) < /dev/null > /dev/null 2>&1 || { + echo + echo "**Error**: You must have \`libtool' installed." + echo "Get ftp://ftp.gnu.org/pub/gnu/libtool-1.2d.tar.gz" + echo "(or a newer version if it is available)" + DIE=1 + } +} + +grep "^AM_GNU_GETTEXT" $srcdir/configure.in >/dev/null && { + grep "sed.*POTFILES" $srcdir/configure.in >/dev/null || \ + (gettext --version) < /dev/null > /dev/null 2>&1 || { + echo + echo "**Error**: You must have \`gettext' installed." + echo "Get ftp://alpha.gnu.org/gnu/gettext-0.10.35.tar.gz" + echo "(or a newer version if it is available)" + DIE=1 + } +} + +grep "^AM_GNOME_GETTEXT" $srcdir/configure.in >/dev/null && { + grep "sed.*POTFILES" $srcdir/configure.in >/dev/null || \ + (gettext --version) < /dev/null > /dev/null 2>&1 || { + echo + echo "**Error**: You must have \`gettext' installed." + echo "Get ftp://alpha.gnu.org/gnu/gettext-0.10.35.tar.gz" + echo "(or a newer version if it is available)" + DIE=1 + } +} + +(automake --version) < /dev/null > /dev/null 2>&1 || { + echo + echo "**Error**: You must have \`automake' installed." + echo "Get ftp://ftp.gnu.org/pub/gnu/automake-1.3.tar.gz" + echo "(or a newer version if it is available)" + DIE=1 + NO_AUTOMAKE=yes +} + + +# if no automake, don't bother testing for aclocal +test -n "$NO_AUTOMAKE" || (aclocal --version) < /dev/null > /dev/null 2>&1 || { + echo + echo "**Error**: Missing \`aclocal'. The version of \`automake'" + echo "installed doesn't appear recent enough." + echo "Get ftp://ftp.gnu.org/pub/gnu/automake-1.3.tar.gz" + echo "(or a newer version if it is available)" + DIE=1 +} + +if test "$DIE" -eq 1; then + exit 1 +fi + +if test -z "$*"; then + echo "**Warning**: I am going to run \`configure' with no arguments." + echo "If you wish to pass any to it, please specify them on the" + echo \`$0\'" command line." + echo +fi + +case $CC in +xlc ) + am_opt=--include-deps;; +esac + +for coin in `find $srcdir -name configure.in -print` +do + dr=`dirname $coin` + if test -f $dr/NO-AUTO-GEN; then + echo skipping $dr -- flagged as no auto-gen + else + echo processing $dr + macrodirs=`sed -n -e 's,AM_ACLOCAL_INCLUDE(\(.*\)),\1,gp' < $coin` + ( cd $dr + aclocalinclude="$ACLOCAL_FLAGS" + for k in $macrodirs; do + if test -d $k; then + aclocalinclude="$aclocalinclude -I $k" + ##else + ## echo "**Warning**: No such directory \`$k'. Ignored." + fi + done + if grep "^AM_GNU_GETTEXT" configure.in >/dev/null; then + if grep "sed.*POTFILES" configure.in >/dev/null; then + : do nothing -- we still have an old unmodified configure.in + else + echo "Creating $dr/aclocal.m4 ..." + test -r $dr/aclocal.m4 || touch $dr/aclocal.m4 + echo "Running gettextize... Ignore non-fatal messages." + echo "no" | gettextize --force --copy + echo "Making $dr/aclocal.m4 writable ..." + test -r $dr/aclocal.m4 && chmod u+w $dr/aclocal.m4 + fi + fi + if grep "^AM_GNOME_GETTEXT" configure.in >/dev/null; then + echo "Creating $dr/aclocal.m4 ..." + test -r $dr/aclocal.m4 || touch $dr/aclocal.m4 + echo "Running gettextize... Ignore non-fatal messages." + echo "no" | gettextize --force --copy + echo "Making $dr/aclocal.m4 writable ..." + test -r $dr/aclocal.m4 && chmod u+w $dr/aclocal.m4 + fi + if grep "^AM_PROG_LIBTOOL" configure.in >/dev/null; then + echo "Running libtoolize..." + libtoolize --force --copy + fi + echo "Running aclocal $aclocalinclude ..." + aclocal $aclocalinclude + if grep "^AM_CONFIG_HEADER" configure.in >/dev/null; then + echo "Running autoheader..." + autoheader + fi + echo "Running automake --gnu $am_opt ..." + automake --add-missing --gnu $am_opt + echo "Running autoconf ..." + autoconf + ) + fi +done + +#conf_flags="--enable-maintainer-mode --enable-compile-warnings" #--enable-iso-c + +if test x$NOCONFIGURE = x; then + echo Running $srcdir/configure $conf_flags "$@" ... + $srcdir/configure $conf_flags "$@" \ + && echo Now type \`make\' to compile $PKG_NAME +else + echo Skipping configure process. +fi diff --git a/branches/paradiseo-moeo-1.0/configure.in b/branches/paradiseo-moeo-1.0/configure.in new file mode 100644 index 000000000..253a290ba --- /dev/null +++ b/branches/paradiseo-moeo-1.0/configure.in @@ -0,0 +1,43 @@ +AC_INIT(configure.in) +AM_INIT_AUTOMAKE(moeo, 0.1) + +AC_ISC_POSIX +AC_PROG_CXX +AM_PROG_CC_STDC +AC_HEADER_STDC +AC_PROG_RANLIB + +AC_PROG_INSTALL +AC_PROG_LN_S +AC_PROG_MAKE_SET + +AC_C_CONST +AC_C_INLINE +AC_TYPE_SIZE_T + +AC_SUBST(EO_DIR) + +dnl EO +AC_ARG_WITH(EOdir, + --with-EOdir : Giving the path of the EO tree., + EO_DIR="$withval" + if test ! -d $EO_DIR + then + echo "" + echo "# --with-EOdir Invalid directory $withval" + exit 1 + fi, + echo "" + echo "# You forgot to give the path of the EO tree !" + echo "# Please write something like ... './configure --with-EOdir=\$HOME/eo'" + exit 1 + ) + +AC_OUTPUT([ +Makefile +src/Makefile +docs/Makefile +tutorials/Makefile +tutorials/lesson1/Makefile +tutorials/lesson2/Makefile +]) diff --git a/branches/paradiseo-moeo-1.0/docs/Makefile.am b/branches/paradiseo-moeo-1.0/docs/Makefile.am new file mode 100644 index 000000000..254b2661c --- /dev/null +++ b/branches/paradiseo-moeo-1.0/docs/Makefile.am @@ -0,0 +1,5 @@ +doc: + -@doxygen moeo.doxyfile + +clean-local: + rm -rf html latex man diff --git a/branches/paradiseo-moeo-1.0/docs/index.h b/branches/paradiseo-moeo-1.0/docs/index.h new file mode 100644 index 000000000..a8ab0ea63 --- /dev/null +++ b/branches/paradiseo-moeo-1.0/docs/index.h @@ -0,0 +1,53 @@ +/** @mainpage Welcome to ParadisEO-MOEO + +@section intro Introduction + +ParadisEO-MOEO is a white-box object-oriented generic framework dedicated to the flexible design of evolutionary multi-objective algorithms. +This paradigm-free software embeds some features and techniques for Pareto-based resolution and +aims to provide a set of classes allowing to ease and speed up the development of computationally efficient programs. +It is based on a clear conceptual distinction between the solution methods and the multi-objective problems they are intended to solve. +This separation confers a maximum design and code reuse. +ParadisEO-MOEO provides a broad range of archive-related features (such as elitism or performance metrics) +and the most common Pareto-based fitness assignment strategies (MOGA, NSGA, SPEA, IBEA and more). +Furthermore, parallel and distributed models as well as hybridization mechanisms can be applied to an algorithm designed within ParadisEO-MOEO +using the whole version of ParadisEO. + + + +@section tutorial Tutorial + +A tutorial about a bi-objective flow-shop scheduling problem will be available soon. + + + +@section install Installation + +The installation procedure of the package is detailed in the README file in the top-directory of the source-tree. + + + +@section design Overall Design + +For an introduction to the design of ParadisEO-MOEO, +you can look at the ParadisEO website. +*/ + + + +/** @page webpages Related webpages + +- ParadisEO homepage +- INRIA GForge project page +- README +- NEWS +*/ + + + +// Local Variables: +// coding: iso-8859-1 +// mode: C++ +// c-file-style: "Stroustrup" +// fill-column: 80 +// End: diff --git a/branches/paradiseo-moeo-1.0/docs/moeo.doxyfile b/branches/paradiseo-moeo-1.0/docs/moeo.doxyfile new file mode 100644 index 000000000..5b8de0c70 --- /dev/null +++ b/branches/paradiseo-moeo-1.0/docs/moeo.doxyfile @@ -0,0 +1,237 @@ +# Doxyfile 1.5.1 + +#--------------------------------------------------------------------------- +# Project related configuration options +#--------------------------------------------------------------------------- +PROJECT_NAME = ParadisEO-MOEO +PROJECT_NUMBER = 0.1 +OUTPUT_DIRECTORY = +CREATE_SUBDIRS = NO +OUTPUT_LANGUAGE = English +USE_WINDOWS_ENCODING = NO +BRIEF_MEMBER_DESC = YES +REPEAT_BRIEF = YES +ABBREVIATE_BRIEF = "The $name class" \ + "The $name widget" \ + "The $name file" \ + is \ + provides \ + specifies \ + contains \ + represents \ + a \ + an \ + the +ALWAYS_DETAILED_SEC = NO +INLINE_INHERITED_MEMB = NO +FULL_PATH_NAMES = NO +STRIP_FROM_PATH = +STRIP_FROM_INC_PATH = +SHORT_NAMES = NO +JAVADOC_AUTOBRIEF = YES +MULTILINE_CPP_IS_BRIEF = NO +DETAILS_AT_TOP = NO +INHERIT_DOCS = YES +SEPARATE_MEMBER_PAGES = NO +TAB_SIZE = 8 +ALIASES = +OPTIMIZE_OUTPUT_FOR_C = NO +OPTIMIZE_OUTPUT_JAVA = NO +BUILTIN_STL_SUPPORT = NO +DISTRIBUTE_GROUP_DOC = NO +SUBGROUPING = YES +#--------------------------------------------------------------------------- +# Build related configuration options +#--------------------------------------------------------------------------- +EXTRACT_ALL = NO +EXTRACT_PRIVATE = YES +EXTRACT_STATIC = YES +EXTRACT_LOCAL_CLASSES = YES +EXTRACT_LOCAL_METHODS = NO +HIDE_UNDOC_MEMBERS = YES +HIDE_UNDOC_CLASSES = YES +HIDE_FRIEND_COMPOUNDS = NO +HIDE_IN_BODY_DOCS = NO +INTERNAL_DOCS = NO +CASE_SENSE_NAMES = YES +HIDE_SCOPE_NAMES = NO +SHOW_INCLUDE_FILES = YES +INLINE_INFO = YES +SORT_MEMBER_DOCS = NO +SORT_BRIEF_DOCS = NO +SORT_BY_SCOPE_NAME = NO +GENERATE_TODOLIST = YES +GENERATE_TESTLIST = YES +GENERATE_BUGLIST = YES +GENERATE_DEPRECATEDLIST= YES +ENABLED_SECTIONS = +MAX_INITIALIZER_LINES = 30 +SHOW_USED_FILES = YES +SHOW_DIRECTORIES = NO +FILE_VERSION_FILTER = +#--------------------------------------------------------------------------- +# configuration options related to warning and progress messages +#--------------------------------------------------------------------------- +QUIET = YES +WARNINGS = YES +WARN_IF_UNDOCUMENTED = YES +WARN_IF_DOC_ERROR = YES +WARN_NO_PARAMDOC = NO +WARN_FORMAT = "$file:$line: $text" +WARN_LOGFILE = +#--------------------------------------------------------------------------- +# configuration options related to the input files +#--------------------------------------------------------------------------- +INPUT = . ../src +FILE_PATTERNS = *.cpp \ + *.h \ + NEWS README +RECURSIVE = YES +EXCLUDE = +EXCLUDE_SYMLINKS = NO +EXCLUDE_PATTERNS = +EXAMPLE_PATH = +EXAMPLE_PATTERNS = * +EXAMPLE_RECURSIVE = NO +IMAGE_PATH = +INPUT_FILTER = +FILTER_PATTERNS = +FILTER_SOURCE_FILES = NO +#--------------------------------------------------------------------------- +# configuration options related to source browsing +#--------------------------------------------------------------------------- +SOURCE_BROWSER = YES +INLINE_SOURCES = NO +STRIP_CODE_COMMENTS = YES +REFERENCED_BY_RELATION = YES +REFERENCES_RELATION = YES +REFERENCES_LINK_SOURCE = YES +USE_HTAGS = NO +VERBATIM_HEADERS = YES +#--------------------------------------------------------------------------- +# configuration options related to the alphabetical class index +#--------------------------------------------------------------------------- +ALPHABETICAL_INDEX = YES +COLS_IN_ALPHA_INDEX = 3 +IGNORE_PREFIX = moeo +#--------------------------------------------------------------------------- +# configuration options related to the HTML output +#--------------------------------------------------------------------------- +GENERATE_HTML = YES +HTML_OUTPUT = html +HTML_FILE_EXTENSION = .html +HTML_HEADER = +HTML_FOOTER = +HTML_STYLESHEET = +HTML_ALIGN_MEMBERS = YES +GENERATE_HTMLHELP = NO +CHM_FILE = +HHC_LOCATION = +GENERATE_CHI = NO +BINARY_TOC = NO +TOC_EXPAND = NO +DISABLE_INDEX = NO +ENUM_VALUES_PER_LINE = 4 +GENERATE_TREEVIEW = YES +TREEVIEW_WIDTH = 250 +#--------------------------------------------------------------------------- +# configuration options related to the LaTeX output +#--------------------------------------------------------------------------- +GENERATE_LATEX = YES +LATEX_OUTPUT = latex +LATEX_CMD_NAME = latex +MAKEINDEX_CMD_NAME = makeindex +COMPACT_LATEX = NO +PAPER_TYPE = a4wide +EXTRA_PACKAGES = +LATEX_HEADER = +PDF_HYPERLINKS = NO +USE_PDFLATEX = NO +LATEX_BATCHMODE = NO +LATEX_HIDE_INDICES = NO +#--------------------------------------------------------------------------- +# configuration options related to the RTF output +#--------------------------------------------------------------------------- +GENERATE_RTF = NO +RTF_OUTPUT = rtf +COMPACT_RTF = NO +RTF_HYPERLINKS = NO +RTF_STYLESHEET_FILE = +RTF_EXTENSIONS_FILE = +#--------------------------------------------------------------------------- +# configuration options related to the man page output +#--------------------------------------------------------------------------- +GENERATE_MAN = YES +MAN_OUTPUT = man +MAN_EXTENSION = .3 +MAN_LINKS = NO +#--------------------------------------------------------------------------- +# configuration options related to the XML output +#--------------------------------------------------------------------------- +GENERATE_XML = NO +XML_OUTPUT = xml +XML_SCHEMA = +XML_DTD = +XML_PROGRAMLISTING = YES +#--------------------------------------------------------------------------- +# configuration options for the AutoGen Definitions output +#--------------------------------------------------------------------------- +GENERATE_AUTOGEN_DEF = NO +#--------------------------------------------------------------------------- +# configuration options related to the Perl module output +#--------------------------------------------------------------------------- +GENERATE_PERLMOD = NO +PERLMOD_LATEX = NO +PERLMOD_PRETTY = YES +PERLMOD_MAKEVAR_PREFIX = +#--------------------------------------------------------------------------- +# Configuration options related to the preprocessor +#--------------------------------------------------------------------------- +ENABLE_PREPROCESSING = YES +MACRO_EXPANSION = NO +EXPAND_ONLY_PREDEF = NO +SEARCH_INCLUDES = YES +INCLUDE_PATH = +INCLUDE_FILE_PATTERNS = +PREDEFINED = +EXPAND_AS_DEFINED = +SKIP_FUNCTION_MACROS = YES +#--------------------------------------------------------------------------- +# Configuration::additions related to external references +#--------------------------------------------------------------------------- +TAGFILES = ../../paradiseo-eo/doc/eo.doxytag=../../paradiseo-eo/doc/doc/html +GENERATE_TAGFILE = moeo.doxytag +ALLEXTERNALS = NO +EXTERNAL_GROUPS = YES +PERL_PATH = /usr/bin/perl +#--------------------------------------------------------------------------- +# Configuration options related to the dot tool +#--------------------------------------------------------------------------- +CLASS_DIAGRAMS = YES +HIDE_UNDOC_RELATIONS = YES +HAVE_DOT = NO +CLASS_GRAPH = YES +COLLABORATION_GRAPH = YES +GROUP_GRAPHS = YES +UML_LOOK = NO +TEMPLATE_RELATIONS = NO +INCLUDE_GRAPH = YES +INCLUDED_BY_GRAPH = YES +CALL_GRAPH = NO +CALLER_GRAPH = NO +GRAPHICAL_HIERARCHY = YES +DIRECTORY_GRAPH = YES +DOT_IMAGE_FORMAT = png +DOT_PATH = +DOTFILE_DIRS = +MAX_DOT_GRAPH_WIDTH = 1024 +MAX_DOT_GRAPH_HEIGHT = 1024 +MAX_DOT_GRAPH_DEPTH = 0 +DOT_TRANSPARENT = NO +DOT_MULTI_TARGETS = NO +GENERATE_LEGEND = YES +DOT_CLEANUP = YES +#--------------------------------------------------------------------------- +# Configuration::additions related to the search engine +#--------------------------------------------------------------------------- +SEARCHENGINE = YES diff --git a/branches/paradiseo-moeo-1.0/src/MOEO.h b/branches/paradiseo-moeo-1.0/src/MOEO.h new file mode 100644 index 000000000..a191aa929 --- /dev/null +++ b/branches/paradiseo-moeo-1.0/src/MOEO.h @@ -0,0 +1,280 @@ +// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*- + +//----------------------------------------------------------------------------- +// MOEO.h +// (c) OPAC Team (LIFL), Dolphin Project (INRIA), 2007 +/* + This library... + + Contact: paradiseo-help@lists.gforge.inria.fr, http://paradiseo.gforge.inria.fr + */ +//----------------------------------------------------------------------------- + +#ifndef MOEO_H_ +#define MOEO_H_ + +#include +#include +#include +#include + +/** + * Base class allowing to represent a solution (an individual) for multi-objective optimization. + * The template argument MOEOObjectiveVector allows to represent the solution in the objective space (it can be a moeoObjectiveVector object). + * The template argument MOEOFitness is an object reflecting the quality of the solution in term of convergence (the fitness of a solution is always to be maximized). + * The template argument MOEODiversity is an object reflecting the quality of the solution in term of diversity (the diversity of a solution is always to be maximized). + * All template arguments must have a void and a copy constructor. + * Besides, note that, contrary to the mono-objective case (and to EO) where the fitness value of a solution is confused with its objective value, + * the fitness value differs of the objectives values in the multi-objective case. + * + * !!!!!!!!!!!!!!!!! !!!!! + * operator '<' et '>' ??? + * !!!!!!!!!!!!!!!!!!!!!!! + */ +template < class MOEOObjectiveVector, class MOEOFitness, class MOEODiversity > +class MOEO : public EO < MOEOFitness > +{ +public: + + /** the objective vector type of a solution */ + typedef MOEOObjectiveVector ObjectiveVector; + + /** the fitness type of a solution */ + typedef MOEOFitness Fitness; + + /** the diversity type of a solution */ + typedef MOEODiversity Diversity; + + + /** + * Ctor + */ + MOEO() + { + // default values for every parameters + objectiveVectorValue = ObjectiveVector(); + fitnessValue = Fitness(); + diversityValue = Diversity(); + // invalidate all + invalidate(); + } + + + /** + * Virtual dtor + */ + virtual ~MOEO() {}; + + + /** + * Returns the objective vector of the current solution + */ + ObjectiveVector objectiveVector() const + { + if ( invalidObjectiveVector() ) + { + throw std::runtime_error("invalid objective vector"); + } + return objectiveVectorValue; + } + + + /** + * Sets the objective vector of the current solution + * @param _objectiveVectorValue the new objective vector + */ + void objectiveVector(const ObjectiveVector & _objectiveVectorValue) + { + objectiveVectorValue = _objectiveVectorValue; + invalidObjectiveVectorValue = false; + } + + + /** + * Sets the objective vector as invalid + */ + void invalidateObjectiveVector() + { + invalidObjectiveVectorValue = true; + } + + + /** + * Returns true if the objective vector is invalid, false otherwise + */ + bool invalidObjectiveVector() const + { + return invalidObjectiveVectorValue; + } + + + /** + * Returns the fitness value of the current solution + */ + Fitness fitness() const + { + if ( invalidFitness() ) + { + throw std::runtime_error("invalid fitness"); + } + return fitnessValue; + } + + + /** + * Sets the fitness value of the current solution + * @param _fitnessValue the new fitness value + */ + void fitness(const Fitness & _fitnessValue) + { + fitnessValue = _fitnessValue; + invalidFitnessValue = false; + } + + + /** + * Sets the fitness value as invalid + */ + void invalidateFitness() + { + invalidFitnessValue = true; + } + + + /** + * Returns true if the fitness value is invalid, false otherwise + */ + bool invalidFitness() const + { + return invalidFitnessValue; + } + + + /** + * Returns the diversity value of the current solution + */ + Diversity diversity() const + { + if ( invalidDiversity() ) + { + throw std::runtime_error("invalid diversity"); + } + return diversityValue; + } + + + /** + * Sets the diversity value of the current solution + * @param _diversityValue the new diversity value + */ + void diversity(const Diversity & _diversityValue) + { + diversityValue = _diversityValue; + invalidDiversityValue = false; + } + + + /** + * Sets the diversity value as invalid + */ + void invalidateDiversity() + { + invalidDiversityValue = true; + } + + + /** + * Returns true if the diversity value is invalid, false otherwise + */ + bool invalidDiversity() const + { + return invalidDiversityValue; + } + + + /** + * Sets the objective vector, the fitness value and the diversity value as invalid + */ + void invalidate() + { + invalidateObjectiveVector(); + invalidateFitness(); + invalidateDiversity(); + } + + + /** + * Returns true if the fitness value is invalid, false otherwise + */ + bool invalid() const + { + return invalidObjectiveVector(); + } + + + /** + * Return the class id (the class name as a std::string) + */ + virtual std::string className() const + { + return "MOEO"; + } + + + /** + * Writing object + * @param _os output stream + */ + virtual void printOn(std::ostream & _os) const + { + if ( invalidObjectiveVector() ) + { + _os << "INVALID\t"; + } + else + { + _os << objectiveVectorValue << '\t'; + } + } + + + /** + * Reading object + * @param _is input stream + */ + virtual void readFrom(std::istream & _is) + { + std::string objectiveVector_str; + int pos = _is.tellg(); + _is >> objectiveVector_str; + if (objectiveVector_str == "INVALID") + { + invalidateObjectiveVector(); + } + else + { + invalidObjectiveVectorValue = false; + _is.seekg(pos); // rewind + _is >> objectiveVectorValue; + } + } + + +private: + + /** the objective vector of this solution */ + ObjectiveVector objectiveVectorValue; + /** true if the objective vector is invalid */ + bool invalidObjectiveVectorValue; + /** the fitness value of this solution */ + Fitness fitnessValue; + /** true if the fitness value is invalid */ + bool invalidFitnessValue; + /** the diversity value of this solution */ + Diversity diversityValue; + /** true if the diversity value is invalid */ + bool invalidDiversityValue; + +}; + +#endif /*MOEO_H_*/ diff --git a/branches/paradiseo-moeo-1.0/src/Makefile.am b/branches/paradiseo-moeo-1.0/src/Makefile.am new file mode 100644 index 000000000..ae1e51b3c --- /dev/null +++ b/branches/paradiseo-moeo-1.0/src/Makefile.am @@ -0,0 +1 @@ +# Nothing to compile ! diff --git a/branches/paradiseo-moeo-1.0/src/metric/moeoAdditiveEpsilonBinaryMetric.h b/branches/paradiseo-moeo-1.0/src/metric/moeoAdditiveEpsilonBinaryMetric.h new file mode 100644 index 000000000..cfb543b9f --- /dev/null +++ b/branches/paradiseo-moeo-1.0/src/metric/moeoAdditiveEpsilonBinaryMetric.h @@ -0,0 +1,39 @@ +// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*- + +//----------------------------------------------------------------------------- +// moeoAdditiveEpsilonBinaryMetric.h +// (c) OPAC Team (LIFL), Dolphin Project (INRIA), 2007 +/* + This library... + + Contact: paradiseo-help@lists.gforge.inria.fr, http://paradiseo.gforge.inria.fr + */ +//----------------------------------------------------------------------------- + +#ifndef MOEOADDITIVEEPSILONBINARYMETRIC_H_ +#define MOEOADDITIVEEPSILONBINARYMETRIC_H_ + +#include + +/** + * + */ +template < class MOEOT > +class moeoAdditiveEpsilonBinaryMetric : public moeoSolutionVsSolutionBinaryMetric < MOEOT, double > +{ +public: + + /** the objective vector type of a solution */ + typedef typename MOEOT::ObjectiveVector ObjectiveVector; + + moeoAdditiveEpsilonBinaryMetric(); + + + double operator()(const std::vector < ObjectiveVector > & _set1, const std::vector < ObjectiveVector > & _set2) + { + + } + +}; + +#endif /*MOEOADDITIVEEPSILONBINARYMETRIC_H_*/ diff --git a/branches/paradiseo-moeo-1.0/src/metric/moeoBinaryMetricSavingUpdater.h b/branches/paradiseo-moeo-1.0/src/metric/moeoBinaryMetricSavingUpdater.h new file mode 100644 index 000000000..8b66e1714 --- /dev/null +++ b/branches/paradiseo-moeo-1.0/src/metric/moeoBinaryMetricSavingUpdater.h @@ -0,0 +1,90 @@ +// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*- + +//----------------------------------------------------------------------------- +// moeoBinaryMetricSavingUpdater.h +// (c) OPAC Team (LIFL), Dolphin Project (INRIA), 2006 +/* + This library... + + Contact: paradiseo-help@lists.gforge.inria.fr, http://paradiseo.gforge.inria.fr + */ +//----------------------------------------------------------------------------- + +#ifndef MOEOBINARYMETRICSAVINGUPDATER_H_ +#define MOEOBINARYMETRICSAVINGUPDATER_H_ + +#include +#include +#include +#include +#include + +/** + * This class allows to save the progression of a binary metric comparing the fitness values of the current population (or archive) + * with the fitness values of the population (or archive) of the generation (n-1) into a file + */ +template +class moeoBinaryMetricSavingUpdater : public eoUpdater +{ +public: + + /** + * The fitness type of a solution + */ + typedef typename EOT::ObjectiveVector ObjectiveVector; + + /** + * Ctor + * @param _metric the binary metric comparing two Pareto sets + * @param _pop the main population + * @param _filename the target filename + */ + moeoBinaryMetricSavingUpdater (moeoPopVsPopBinaryMetric & _metric, const eoPop & _pop, std::string _filename) : + metric(_metric), pop(_pop), filename(_filename), counter(1) + {} + + /** + * Saves the metric's value for the current generation + */ + void operator()() { + if (pop.size()) { + if (firstGen) { + firstGen = false; + } + else { + // creation of the two Pareto sets + /* + std::vector from; + std::vector to; + for (unsigned i=0; i & metric; + /** main population */ + const eoPop & pop; + /** (n-1) population */ + eoPop oldPop; + /** target filename */ + std::string filename; + /** is it the first generation ? */ + bool firstGen; + /** counter */ + unsigned counter; + +}; + +#endif /*MOEOBINARYMETRICSAVINGUPDATER_H_*/ diff --git a/branches/paradiseo-moeo-1.0/src/metric/moeoContributionMetric.h b/branches/paradiseo-moeo-1.0/src/metric/moeoContributionMetric.h new file mode 100644 index 000000000..34ebb3963 --- /dev/null +++ b/branches/paradiseo-moeo-1.0/src/metric/moeoContributionMetric.h @@ -0,0 +1,111 @@ +// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*- + +//----------------------------------------------------------------------------- +// moeoContributionMetric.h +// (c) OPAC Team (LIFL), Dolphin Project (INRIA), 2006 +/* + This library... + + Contact: paradiseo-help@lists.gforge.inria.fr, http://paradiseo.gforge.inria.fr + */ +//----------------------------------------------------------------------------- + +#ifndef MOEOCONTRIBUTIONMETRIC_H_ +#define MOEOCONTRIBUTIONMETRIC_H_ + +#include + +/** + * The contribution metric evaluates the proportion of non-dominated solutions given by a Pareto set relatively to another Pareto set + * + * (Meunier, Talbi, Reininger: 'A multiobjective genetic algorithm for radio network optimization', in Proc. of the 2000 Congress on Evolutionary Computation, IEEE Press, pp. 317-324) + */ +template < class MOEOT > +class moeoContributionMetric : public moeoPopVsPopBinaryMetric < MOEOT, double > +{ +public: + + /** the objective vector type of a solution */ + typedef typename MOEOT::ObjectiveVector ObjectiveVector; + + + /** + * Returns the contribution of the Pareto set '_set1' relatively to the Pareto set '_set2' + * @param _set1 the first Pareto set + * @param _set2 the second Pareto set + */ + double operator()(const eoPop < MOEOT > & _pop1, const eoPop < MOEOT > & _pop2) { + /************/ + std::vector set1; + std::vector set2; + for (unsigned i=0; i<_pop1.size(); i++) + set1.push_back(_pop1[i].objectiveVector()); + for (unsigned i=0 ; i<_pop2.size(); i++) + set2.push_back(_pop2[i].objectiveVector()); + /****************/ + unsigned c = card_C(set1, set2); + unsigned w1 = card_W(set1, set2); + unsigned n1 = card_N(set1, set2); + unsigned w2 = card_W(set2, set1); + unsigned n2 = card_N(set2, set1); + return (double) (c / 2.0 + w1 + n1) / (c + w1 + n1 + w2 + n2); + } + + +private: + + /** + * Returns the number of solutions both in '_set1' and '_set2' + * @param _set1 the first Pareto set + * @param _set2 the second Pareto set + */ + unsigned card_C (const std::vector < ObjectiveVector > & _set1, const std::vector < ObjectiveVector > & _set2) { + unsigned c=0; + for (unsigned i=0; i<_set1.size(); i++) + for (unsigned j=0; j<_set2.size(); j++) + if (_set1[i] == _set2[j]) { + c++; + break; + } + return c; + } + + /** + * Returns the number of solutions in '_set1' dominating at least one solution of '_set2' + * @param _set1 the first Pareto set + * @param _set2 the second Pareto set + */ + unsigned card_W (const std::vector < ObjectiveVector > & _set1, const std::vector < ObjectiveVector > & _set2) { + unsigned w=0; + for (unsigned i=0; i<_set1.size(); i++) + for (unsigned j=0; j<_set2.size(); j++) + if (_set1[i].dominates(_set2[j])) { + w++; + break; + } + return w; + } + + /** + * Returns the number of solutions in '_set1' having no relation of dominance with those from '_set2' + * @param _set1 the first Pareto set + * @param _set2 the second Pareto set + */ + unsigned card_N (const std::vector < ObjectiveVector > & _set1, const std::vector < ObjectiveVector > & _set2) { + unsigned n=0; + for (unsigned i=0; i<_set1.size(); i++) { + bool domin_rel = false; + for (unsigned j=0; j<_set2.size(); j++) + if (_set1[i].dominates(_set2[j]) || _set2[j].dominates(_set1 [i])) { + domin_rel = true; + break; + } + if (! domin_rel) + n++; + } + return n; + } + +}; + +#endif /*MOEOCONTRIBUTIONMETRIC_H_*/ diff --git a/branches/paradiseo-moeo-1.0/src/metric/moeoEntropyMetric.h b/branches/paradiseo-moeo-1.0/src/metric/moeoEntropyMetric.h new file mode 100644 index 000000000..2f4ff5328 --- /dev/null +++ b/branches/paradiseo-moeo-1.0/src/metric/moeoEntropyMetric.h @@ -0,0 +1,149 @@ +// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*- + +//----------------------------------------------------------------------------- +// moeoEntropyMetric.h +// (c) OPAC Team (LIFL), Dolphin Project (INRIA), 2006 +/* + This library... + + Contact: paradiseo-help@lists.gforge.inria.fr, http://paradiseo.gforge.inria.fr + */ +//----------------------------------------------------------------------------- + +#ifndef MOEOENTROPYMETRIC_H_ +#define MOEOENTROPYMETRIC_H_ + +#include + +/** + * The entropy gives an idea of the diversity of a Pareto set relatively to another Pareto set + * + * (Basseur, Seynhaeve, Talbi: 'Design of Multi-objective Evolutionary Algorithms: Application to the Flow-shop Scheduling Problem', in Proc. of the 2002 Congress on Evolutionary Computation, IEEE Press, pp. 1155-1156) + */ +template < class MOEOT > +class moeoEntropyMetric : public moeoVectorVsVectorBinaryMetric < MOEOT, double > +{ +public: + + /** the objective vector type of a solution */ + typedef typename MOEOT::ObjectiveVector ObjectiveVector; + + /** + * Returns the entropy of the Pareto set '_set1' relatively to the Pareto set '_set2' + * @param _set1 the first Pareto set + * @param _set2 the second Pareto set + */ + double operator()(const std::vector < ObjectiveVector > & _set1, const std::vector < ObjectiveVector > & _set2) { + // normalization + std::vector< ObjectiveVector > set1 = _set1; + std::vector< ObjectiveVector > set2= _set2; + removeDominated (set1); + removeDominated (set2); + prenormalize (set1); + normalize (set1); + normalize (set2); + + // making of PO* + std::vector< ObjectiveVector > star; // rotf :-) + computeUnion (set1, set2, star); + removeDominated (star); + + // making of PO1 U PO* + std::vector< ObjectiveVector > union_set1_star; // rotf again ... + computeUnion (set1, star, union_set1_star); + + unsigned C = union_set1_star.size(); + float omega=0; + float entropy=0; + + for (unsigned i=0 ; i 0) { + omega += 1.0 / N_i; + entropy += (float) n_i / (N_i * C) * log (((float) n_i / C) / log (2.0)); + } + } + entropy /= - log (omega); + entropy *= log (2.0); + return entropy; + } + + +private: + + std::vector vect_min_val; + std::vector vect_max_val; + + void removeDominated(std::vector< ObjectiveVector > & _f) { + for (unsigned i=0 ; i<_f.size(); i++) { + bool dom = false; + for (unsigned j=0; j<_f.size(); j++) + if (i != j && _f[j].dominates(_f[i])) { + dom = true; + break; + } + if (dom) { + _f[i] = _f.back(); + _f.pop_back(); + i--; + } + } + } + + void prenormalize (const std::vector< ObjectiveVector > & _f) { + vect_min_val.clear(); + vect_max_val.clear(); + + for (unsigned char i=0 ; imax_val) + max_val = _f[j][i]; + } + vect_min_val.push_back(min_val); + vect_max_val.push_back (max_val); + } + } + + void normalize (std::vector< ObjectiveVector > & _f) { + for (unsigned i=0 ; i & _f1, const std::vector< ObjectiveVector > & _f2, std::vector< ObjectiveVector > & _f) { + _f = _f1 ; + for (unsigned i=0; i<_f2.size(); i++) { + bool b = false; + for (unsigned j=0; j<_f1.size(); j ++) + if (_f1[j] == _f2[i]) { + b = true; + break; + } + if (! b) + _f.push_back(_f2[i]); + } + } + + unsigned howManyInNicheOf (const std::vector< ObjectiveVector > & _f, const ObjectiveVector & _s, unsigned _size) { + unsigned n=0; + for (unsigned i=0 ; i<_f.size(); i++) { + if (euclidianDistance(_f[i], _s) < (_s.size() / (double) _size)) + n++; + } + return n; + } + + double euclidianDistance (const ObjectiveVector & _set1, const ObjectiveVector & _to, unsigned _deg = 2) { + double dist=0; + for (unsigned i=0; i<_set1.size(); i++) + dist += pow(fabs(_set1[i] - _to[i]), (int)_deg); + return pow(dist, 1.0 / _deg); + } + +}; + +#endif /*MOEOENTROPYMETRIC_H_*/ diff --git a/branches/paradiseo-moeo-1.0/src/metric/moeoMetric.h b/branches/paradiseo-moeo-1.0/src/metric/moeoMetric.h new file mode 100644 index 000000000..2163770ba --- /dev/null +++ b/branches/paradiseo-moeo-1.0/src/metric/moeoMetric.h @@ -0,0 +1,86 @@ +// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*- + +//----------------------------------------------------------------------------- +// moeoMetric.h +// (c) OPAC Team (LIFL), Dolphin Project (INRIA), 2007 +/* + This library... + + Contact: paradiseo-help@lists.gforge.inria.fr, http://paradiseo.gforge.inria.fr + */ +//----------------------------------------------------------------------------- + +#ifndef MOEOMETRIC_H_ +#define MOEOMETRIC_H_ + +#include + +/** + * Base class for performance metrics (also called quality indicators) + */ +class moeoMetric : public eoFunctorBase +{}; + + +/** + * Base class for unary metrics + */ +template < class A, class R > +class moeoUnaryMetric : public eoUF < A, R >, public moeoMetric +{}; + + +/** + * Base class for binary metrics + */ +template < class A1, class A2, class R > +class moeoBinaryMetric : public eoBF < A1, A2, R >, public moeoMetric +{}; + + +/** + * Base class for unary metrics dedicated to the performance evaluation of a single solution's Pareto fitness + */ +template < class MOEOT, class R>//, class ObjVector = typename MOEOT::ObjectiveVector > +//class moeoSolutionUnaryMetric : public moeoUnaryMetric < const ObjVector &, R > +class moeoSolutionUnaryMetric : public moeoUnaryMetric < const MOEOT &, R > +{}; + + +/** + * Base class for unary metrics dedicated to the performance evaluation of a Pareto set (a vector of Pareto fitnesses) + */ +template < class MOEOT, class R>//, class ObjVector = typename MOEOT::ObjectiveVector > +//class moeoVectorUnaryMetric : public moeoUnaryMetric < const std::vector < ObjVector > &, R > +class moeoPopUnaryMetric : public moeoUnaryMetric < const eoPop < MOEOT > &, R > +{}; + + +/** + * Base class for binary metrics dedicated to the performance comparison between two solutions's Pareto fitnesses + */ +template < class MOEOT, class R>//, class ObjVector = typename MOEOT::ObjectiveVector > +//class moeoSolutionVsSolutionBinaryMetric : public moeoBinaryMetric < const ObjVector &, const ObjVector &, R > +class moeoSolutionVsSolutionBinaryMetric : public moeoBinaryMetric < const MOEOT &, const MOEOT &, R > +{}; + + +/** + * Base class for binary metrics dedicated to the performance comparison between a Pareto set (a vector of Pareto fitnesses) and a single solution's Pareto fitness + */ +template < class MOEOT, class R>//, class ObjVector = typename MOEOT::ObjectiveVector > +//class moeoVectorVsSolutionBinaryMetric : public moeoBinaryMetric < const std::vector < ObjVector > &, const ObjVector &, R > +class moeoPopVsSolutionBinaryMetric : public moeoBinaryMetric < const eoPop < MOEOT > &, const MOEOT &, R > +{}; + + +/** + * Base class for binary metrics dedicated to the performance comparison between two Pareto sets (two vectors of Pareto fitnesses) + */ +template < class MOEOT, class R >//, class ObjVector = typename MOEOT::ObjectiveVector > +//class moeoVectorVsVectorBinaryMetric : public moeoBinaryMetric < const std::vector < ObjVector > &, const std::vector < ObjVector > &, R > +class moeoPopVsPopBinaryMetric : public moeoBinaryMetric < const eoPop < MOEOT > &, const eoPop < MOEOT > &, R > +{}; + + +#endif /*MOEOMETRIC_H_*/ diff --git a/branches/paradiseo-moeo-1.0/src/moeo b/branches/paradiseo-moeo-1.0/src/moeo new file mode 100644 index 000000000..aeb808560 --- /dev/null +++ b/branches/paradiseo-moeo-1.0/src/moeo @@ -0,0 +1,43 @@ +// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*- + +//----------------------------------------------------------------------------- +// moeo +// (c) OPAC Team (LIFL), Dolphin Project (INRIA), 2007 +/* + This library... + + Contact: paradiseo-help@lists.gforge.inria.fr, http://paradiseo.gforge.inria.fr + */ +//----------------------------------------------------------------------------- + +#ifndef MOEO_ +#define MOEO_ + +#include + +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include + +#endif /*MOEO_*/ diff --git a/branches/paradiseo-moeo-1.0/src/moeoArchive.h b/branches/paradiseo-moeo-1.0/src/moeoArchive.h new file mode 100644 index 000000000..e4747bec2 --- /dev/null +++ b/branches/paradiseo-moeo-1.0/src/moeoArchive.h @@ -0,0 +1,156 @@ +// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*- + +//----------------------------------------------------------------------------- +// moeoArchive.h +// (c) OPAC Team (LIFL), Dolphin Project (INRIA), 2007 +/* + This library... + + Contact: paradiseo-help@lists.gforge.inria.fr, http://paradiseo.gforge.inria.fr + */ +//----------------------------------------------------------------------------- + +#ifndef MOEOARCHIVE_H_ +#define MOEOARCHIVE_H_ + +#include + +/** + * An archive is a secondary population that stores non-dominated solutions + */ +template < class MOEOT > +class moeoArchive : public eoPop < MOEOT > +{ +public: + + using std::vector< MOEOT > :: size; + using std::vector< MOEOT > :: operator[]; + using std::vector< MOEOT > :: back; + using std::vector< MOEOT > :: pop_back; + + + /** + * The type of an objective vector for a solution + */ + typedef typename MOEOT::ObjectiveVector ObjectiveVector; + + + /** + * Default ctor. + * The moeoObjectiveVectorComparator used to compare solutions is based on Pareto dominance + */ + moeoArchive() : eoPop < MOEOT >(), comparator(paretoComparator) + {} + + + /** + * Ctor + * @param _comparator the moeoObjectiveVectorComparator used to compare solutions + */ + moeoArchive(moeoObjectiveVectorComparator < ObjectiveVector > & _comparator) : eoPop < MOEOT >(), comparator(_comparator) + {} + + + /** + * Returns true if the current archive dominates _objectiveVector according to the moeoObjectiveVectorComparator given in the constructor + * @param _objectiveVector the objective vector to compare with the current archive + */ + bool dominates (const ObjectiveVector & _objectiveVector) const + { + for (unsigned i = 0; i < size(); i++) + { + if ( comparator(operator[](i).fitness(), _objectiveVector)==1 ) + { + return true; + } + } + return false; + } + + + /** + * Returns true if the current archive already contains a solution with the same objective values than _objectiveVector + * @param _objectiveVector the objective vector to compare with the current archive + */ + bool contains (const ObjectiveVector & _objectiveVector) const + { + for (unsigned i = 0; i < size; i++) + { + if (operator[](i).fitness () == _objectiveVector) + { + return true; + } + } + return false; + } + + + /** + * Updates the archive with a given individual _moeo + * @param _moeo the given individual + */ + void update (const MOEOT & _moeo) + { + // first step: removing the dominated solutions from the archive + for (unsigned j = 0; j < size();) + { + // if _moeo.fitness() dominates operator[](j).fitness() + //if ( comparator(_moeo.fitness(), operator[](j).fitness())==1 ) + if ( comparator(_moeo.objectiveVector(), operator[](j).objectiveVector())==1 ) + { + operator[](j) = back(); + pop_back(); + } + //else if (_moeo.fitness() == operator[](j).fitness()) + else if (_moeo.objectiveVector() == operator[](j).objectiveVector()) + { + operator[](j) = back(); + pop_back(); + } + else + { + j++; + } + } + // second step: is _moeo dominated? + bool dom = false; + for (unsigned j=0; j & _pop) + { + for (unsigned i=0; i<_pop.size(); i++) + { + update(_pop[i]); + } + } + + +private: + + /** The moeoObjectiveVectorComparator used to compare solutions */ + moeoObjectiveVectorComparator < ObjectiveVector > & comparator; + /** A moeoObjectiveVectorComparator based on Pareto dominance (used as default) */ + moeoParetoObjectiveVectorComparator < ObjectiveVector > paretoComparator; + +}; + +#endif /*MOEOARCHIVE_H_ */ diff --git a/branches/paradiseo-moeo-1.0/src/moeoArchiveFitnessSavingUpdater.h b/branches/paradiseo-moeo-1.0/src/moeoArchiveFitnessSavingUpdater.h new file mode 100644 index 000000000..013b1d744 --- /dev/null +++ b/branches/paradiseo-moeo-1.0/src/moeoArchiveFitnessSavingUpdater.h @@ -0,0 +1,70 @@ +// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*- + +//----------------------------------------------------------------------------- +// moeoArchiveFitnessSavingUpdater.h +// (c) OPAC Team (LIFL), Dolphin Project (INRIA), 2006 +/* + This library... + + Contact: paradiseo-help@lists.gforge.inria.fr, http://paradiseo.gforge.inria.fr + */ +//----------------------------------------------------------------------------- + +#ifndef MOEOARCHIVEFITNESSSAVINGUPDATER_H_ +#define MOEOARCHIVEFITNESSSAVINGUPDATER_H_ + +#include +#include +#include +#include +#include + +#define MAX_BUFFER_SIZE 1000 + +/** + * This class allows to save the fitnesses of solutions contained in an archive into a file at each generation. + */ +template +class moeoArchiveFitnessSavingUpdater : public eoUpdater +{ +public: + + /** + * Ctor + * @param _arch local archive + * @param _filename target filename + * @param _id own ID + */ + moeoArchiveFitnessSavingUpdater (moeoArchive & _arch, const std::string & _filename = "Res/Arch", int _id = -1) : arch(_arch), filename(_filename), id(_id), counter(0) + {} + + /** + * Saves the fitness of the archive's members into the file + */ + void operator()() { + char buff[MAX_BUFFER_SIZE]; + if (id == -1) + sprintf (buff, "%s.%u", filename.c_str(), counter ++); + else + sprintf (buff, "%s.%u.%u", filename.c_str(), id, counter ++); + std::ofstream f(buff); + for (unsigned i = 0; i < arch.size (); i++) + f << arch[i].objectiveVector() << std::endl; + f.close (); + } + + +private: + + /** local archive */ + moeoArchive & arch; + /** target filename */ + std::string filename; + /** own ID */ + int id; + /** counter */ + unsigned counter; + +}; + +#endif /*MOEOARCHIVEFITNESSSAVINGUPDATER_H_*/ diff --git a/branches/paradiseo-moeo-1.0/src/moeoArchiveUpdater.h b/branches/paradiseo-moeo-1.0/src/moeoArchiveUpdater.h new file mode 100644 index 000000000..fa3dfccd0 --- /dev/null +++ b/branches/paradiseo-moeo-1.0/src/moeoArchiveUpdater.h @@ -0,0 +1,54 @@ +// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*- + +//----------------------------------------------------------------------------- +// moeoArchiveUpdater.h +// (c) OPAC Team (LIFL), Dolphin Project (INRIA), 2006 +/* + This library... + + Contact: paradiseo-help@lists.gforge.inria.fr, http://paradiseo.gforge.inria.fr + */ +//----------------------------------------------------------------------------- + +#ifndef MOEOARCHIVEUPDATER_H_ +#define MOEOARCHIVEUPDATER_H_ + +#include +#include +#include + +/** + * This class allows to update the archive at each generation with newly found non-dominated solutions + */ +template < class EOT > +class moeoArchiveUpdater : public eoUpdater +{ +public: + + /** + * Ctor + * @param _arch an archive of non-dominated solutions + * @param _pop the main population + */ + moeoArchiveUpdater(moeoArchive & _arch, const eoPop & _pop) : arch(_arch), pop(_pop) + {} + + + /** + * Updates the archive with newly found non-dominated solutions contained in the main population + */ + void operator()() { + arch.update(pop); + } + + +private: + + /** the archive of non-dominated solutions */ + moeoArchive & arch; + /** the main population */ + const eoPop & pop; + +}; + +#endif /*MOEOARCHIVEUPDATER_H_*/ diff --git a/branches/paradiseo-moeo-1.0/src/moeoCombinedLS.h b/branches/paradiseo-moeo-1.0/src/moeoCombinedLS.h new file mode 100644 index 000000000..a19b4fd5f --- /dev/null +++ b/branches/paradiseo-moeo-1.0/src/moeoCombinedLS.h @@ -0,0 +1,67 @@ +// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*- + +//----------------------------------------------------------------------------- +// moeoCombinedLS.h +// (c) OPAC Team (LIFL), Dolphin Project (INRIA), 2007 +/* + This library... + + Contact: paradiseo-help@lists.gforge.inria.fr, http://paradiseo.gforge.inria.fr + */ +//----------------------------------------------------------------------------- + +#ifndef MOEOCOMBINEDLS_H_ +#define MOEOCOMBINEDLS_H_ + +#include +#include +#include + +/** + * This class allows to embed a set of local searches that are sequentially applied, + * and so working and updating the same archive of non-dominated solutions + */ +template < class MOEOT > +class moeoCombinedLS : public moeoLS < MOEOT > { +public: + + /** + * Ctor + * @param _eval the full evaluator of a solution + * @param _first_ls the first multi-objective local search to add + */ + moeoCombinedLS(moeoEvalFunc < MOEOT > & _eval, moeoLS < MOEOT > & _first_ls) : eval (_eval) { + combinedLS.push_back (& _first_ls); + } + + /** + * Adds a new local search to combine + * @param _ls the multi-objective local search to add + */ + void add(moeoLS < MOEOT > & _ls) { + combinedMOLS.push_back(& _ls); + } + + /** + * Gives a new solution in order to explore the neigborhood. + * The new non-dominated solutions are added to the archive + * @param _eo the solution + * @param _arch the archive of non-dominated solutions + */ + void operator () (const MOEOT & _eo, moeoArchive < MOEOT > & _arch) { + eval(const_cast < MOEOT & > (_eo)); + for (unsigned i=0; i operator()(_eo, _arch); + } + + +private: + + /** the full evaluator of a solution */ + moeoEvalFunc < MOEOT > & eval; + /** the vector that contains the combined LS */ + std::vector< moeoLS < MOEOT > * > combinedLS; + +}; + +#endif /*MOEOCOMBINEDLS_H_*/ diff --git a/branches/paradiseo-moeo-1.0/src/moeoComparator.h b/branches/paradiseo-moeo-1.0/src/moeoComparator.h new file mode 100644 index 000000000..76fb709f7 --- /dev/null +++ b/branches/paradiseo-moeo-1.0/src/moeoComparator.h @@ -0,0 +1,182 @@ +// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*- + +//----------------------------------------------------------------------------- +// moeoComparator.h +// (c) OPAC Team (LIFL), Dolphin Project (INRIA), 2007 +/* + This library... + + Contact: paradiseo-help@lists.gforge.inria.fr, http://paradiseo.gforge.inria.fr + */ +//----------------------------------------------------------------------------- + +#ifndef MOEOPOPSORTER_H_ +#define MOEOPOPSORTER_H_ + +#include +#include + +/** + * Functor allowing to compare two solutions + */ +template < class MOEOT > +class moeoComparator : public eoBF < const MOEOT &, const MOEOT &, const bool > +{}; + + +/** + * Functor allowing to compare two solutions according to their first objective value, then their second, and so on + */ +template < class MOEOT > +class moeoObjectiveComparator : public moeoComparator < MOEOT > +{ +public: + /** + * Returns true if _moeo1 is smaller than _moeo2 on the first objective, then on the second, and so on + * @param _moeo1 the first solution + * @param _moeo2 the second solution + */ + const bool operator()(const MOEOT & _moeo1, const MOEOT & _moeo2) + { + return _moeo1.objectiveVector() < _moeo2.objectiveVector(); + } +}; + + +/** + * Functor allowing to compare two solutions according to their fitness values + */ +template < class MOEOT > +class moeoFitnessComparator : public moeoComparator < MOEOT > +{ +public: + /** + * Returns true if the fitness value of _moeo1 is smaller than the fitness value of _moeo2 + * @param _moeo1 the first solution + * @param _moeo2 the second solution + */ + const bool operator()(const MOEOT & _moeo1, const MOEOT & _moeo2) + { + return _moeo1.fitness() < _moeo2.fitness(); + } +}; + + +/** + * Functor allowing to compare two solutions according to their diversity values + */ +template < class MOEOT > +class moeoDiversityComparator : public moeoComparator < MOEOT > +{ +public: + /** + * Returns true if the diversity value of _moeo1 is smaller than the diversity value of _moeo2 + * @param _moeo1 the first solution + * @param _moeo2 the second solution + */ + const bool operator()(const MOEOT & _moeo1, const MOEOT & _moeo2) + { + return _moeo1.diversity() < _moeo2.diversity(); + } +}; + + +/** + * Functor allowing to compare two solutions according to their fitness values, then according to their diversity values + */ +template < class MOEOT > +class moeoFitnessThenDiversityComparator : public moeoComparator < MOEOT > +{ +public: + /** + * Returns true if _moeo1 is smaller than _moeo2 according to their fitness values, then according to their diversity values + * @param _moeo1 the first solution + * @param _moeo2 the second solution + */ + const bool operator()(const MOEOT & _moeo1, const MOEOT & _moeo2) + { + if (_moeo1.fitness() == _moeo2.fitness()) + { + return _moeo1.diversity() < _moeo2.diversity(); + } + else + { + return _moeo1.fitness() < _moeo2.fitness(); + } + } +}; + + +/** + * Functor allowing to compare two solutions according to their diversity values, then according to their fitness values + */ +template < class MOEOT > +class moeoDiversityThenFitnessComparator : public moeoComparator < MOEOT > +{ +public: + /** + * Returns true if _moeo1 is smaller than _moeo2 according to their diversity values, then according to their fitness values + * @param _moeo1 the first solution + * @param _moeo2 the second solution + */ + const bool operator()(const MOEOT & _moeo1, const MOEOT & _moeo2) + { + if (_moeo1.diversity() == _moeo2.diversity()) + { + return _moeo1.fitness() < _moeo2.fitness(); + } + else + { + return _moeo1.diversity() < _moeo2.diversity(); + } + } +}; + + +/** + * Functor allowing to compare two solutions according to Pareto dominance relation => USEFULL ??? + * +template < class MOEOT > +class moeoParetoDominanceComparator : public moeoComparator < MOEOT > +{ +public: + /** + * Returns true if _moeo1 is dominated by _moeo2 according to Pareto dominance relation + * @param _moeo1 the first solution + * @param _moeo2 the second solution + * + const bool operator()(const MOEOT & _moeo1, const MOEOT & _moeo2) + { + bool result = false; + typedef typename MOEOT::ObjectiveVector::Traits ObjectiveVectorTraits; + for (unsigned i=0; i ObjectiveVectorTraits::tolerance() ) + { + // if the ith objective have to be minimized... + if (ObjectiveVectorTraits::minimizing(i)) + { + if (_moeo1.objectiveVector()[i] < _moeo2.objectiveVector()[i]) + { + return false; // _moeo2 cannot dominate _moeo1 + } + result = true; + } + // if the ith objective have to be maximized... + else if (ObjectiveVectorTraits::maximizing(i)) + { + if (_moeo1.objectiveVector()[i] > _moeo2.objectiveVector()[i]) + { + return false; // _moeo2 cannot dominate _moeo1 + } + result = true; + } + } + } + return result; + } +}; +*/ + +#endif /*MOEOPOPSORTER_H_*/ diff --git a/branches/paradiseo-moeo-1.0/src/moeoDiversityAssignment.h b/branches/paradiseo-moeo-1.0/src/moeoDiversityAssignment.h new file mode 100644 index 000000000..157d8feb0 --- /dev/null +++ b/branches/paradiseo-moeo-1.0/src/moeoDiversityAssignment.h @@ -0,0 +1,26 @@ +// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*- + +//----------------------------------------------------------------------------- +// moeoDiversityAssignment.h +// (c) OPAC Team (LIFL), Dolphin Project (INRIA), 2007 +/* + This library... + + Contact: paradiseo-help@lists.gforge.inria.fr, http://paradiseo.gforge.inria.fr + */ +//----------------------------------------------------------------------------- + +#ifndef MOEODIVERSITYASSIGNMENT_H_ +#define MOEODIVERSITYASSIGNMENT_H_ + +#include +#include + +/** + * Functor that sets the diversity values of a whole population + */ +template < class MOEOT > +class moeoDiversityAssignment : public eoUF < eoPop < MOEOT > &, void > +{}; + +#endif /*MOEODIVERSITYASSIGNMENT_H_*/ diff --git a/branches/paradiseo-moeo-1.0/src/moeoEA.h b/branches/paradiseo-moeo-1.0/src/moeoEA.h new file mode 100644 index 000000000..273d4d741 --- /dev/null +++ b/branches/paradiseo-moeo-1.0/src/moeoEA.h @@ -0,0 +1,25 @@ +// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*- + +//----------------------------------------------------------------------------- +// moeoEA.h +// (c) OPAC Team (LIFL), Dolphin Project (INRIA), 2007 +/* + This library... + + Contact: paradiseo-help@lists.gforge.inria.fr, http://paradiseo.gforge.inria.fr + */ +//----------------------------------------------------------------------------- + +#ifndef MOEOEA_H_ +#define MOEOEA_H_ + +#include + +/** + * Abstract class for multi-objective evolutionary algorithms + */ +template < class MOEOT > +class moeoEA : public eoAlgo < MOEOT > {}; + + +#endif /*MOEOEA_H_*/ diff --git a/branches/paradiseo-moeo-1.0/src/moeoEvalFunc.h b/branches/paradiseo-moeo-1.0/src/moeoEvalFunc.h new file mode 100644 index 000000000..1f6b7544d --- /dev/null +++ b/branches/paradiseo-moeo-1.0/src/moeoEvalFunc.h @@ -0,0 +1,24 @@ +// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*- + +//----------------------------------------------------------------------------- +// moeoEvalFunc.h +// (c) OPAC Team (LIFL), Dolphin Project (INRIA), 2007 +/* + This library... + + Contact: paradiseo-help@lists.gforge.inria.fr, http://paradiseo.gforge.inria.fr + */ +//----------------------------------------------------------------------------- + +#ifndef MOEOEVALFUNC_H_ +#define MOEOEVALFUNC_H_ + +#include + +/* + * Functor that evaluates one MOEO by setting all its objective values. + */ +template < class MOEOT > +class moeoEvalFunc : public eoEvalFunc< MOEOT > {}; + +#endif /*MOEOEVALFUNC_H_*/ diff --git a/branches/paradiseo-moeo-1.0/src/moeoFastNonDominatedSortingFitnessAssignment.h b/branches/paradiseo-moeo-1.0/src/moeoFastNonDominatedSortingFitnessAssignment.h new file mode 100644 index 000000000..5e4585489 --- /dev/null +++ b/branches/paradiseo-moeo-1.0/src/moeoFastNonDominatedSortingFitnessAssignment.h @@ -0,0 +1,176 @@ +// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*- + +//----------------------------------------------------------------------------- +// moeoFastNonDominatedSortingFitnessAssignment.h +// (c) OPAC Team (LIFL), Dolphin Project (INRIA), 2007 +/* + This library... + + Contact: paradiseo-help@lists.gforge.inria.fr, http://paradiseo.gforge.inria.fr + */ +//----------------------------------------------------------------------------- + +#ifndef MOEOFASTNONDOMINATEDSORTINGFITNESSASSIGNMENT_H_ +#define MOEOFASTNONDOMINATEDSORTINGFITNESSASSIGNMENT_H_ + +#include +#include +#include +#include + +/** + * Fitness assignment sheme based on Pareto-dominance count proposed in + * N. Srinivas, K. Deb, "Multiobjective Optimization Using Nondominated Sorting in Genetic Algorithms", Evolutionary Computation vol. 2, no. 3, pp. 221-248 (1994) + * and in + * K. Deb, A. Pratap, S. Agarwal, T. Meyarivan, "A Fast and Elitist Multi-Objective Genetic Algorithm: NSGA-II", IEEE Transactions on Evolutionary Computation, vol. 6, no. 2 (2002). + * This strategy is, for instance, used in NSGA and NSGA-II. + */ +template < class MOEOT > +class moeoFastNonDominatedSortingFitnessAssignment : public moeoParetoBasedFitnessAssignment < MOEOT > +{ +public: + + /** + * Ctor + */ + moeoFastNonDominatedSortingFitnessAssignment() {} + + + /** + * Computes fitness values for every solution contained in the population _pop + * @param _pop the population + */ + void operator()(eoPop < MOEOT > & _pop) + { + // number of objectives for the problem under consideration + unsigned nObjectives = MOEOT::ObjectiveVector::nObjectives(); + if (nObjectives == 1) + { + // one objective + oneObjective(_pop); + } + else if (nObjectives == 2) + { + // two objectives (the two objectives function is still to do) + mObjectives(_pop); + } + else if (nObjectives > 2) + { + // more than two objectives + mObjectives(_pop); + } + else + { + // problem with the number of objectives + throw std::runtime_error("Problem with the number of objectives in moeoFastNonDominatedSortingFitnessAssignment"); + } + } + + +private: + + /** the objective vector type of the solutions */ + typedef typename MOEOT::ObjectiveVector ObjectiveVector; + /** Functor to compare two objective vectors according to Pareto dominance relation */ + moeoParetoObjectiveVectorComparator < ObjectiveVector > comparator; + /** Functor to compare two solutions on the first objective, then on the second, and so on */ + moeoObjectiveComparator < MOEOT > objComparator; + + + /** + * Sets the fitness values for mono-objective problems + * @param _pop the population + */ + void oneObjective (eoPop < MOEOT > & _pop) + { + std::sort(_pop.begin(), _pop.end(), objComparator); + for (unsigned i=0; i<_pop.size(); i++) + { + _pop[i].fitness(i+1); + } + } + + + /** + * Sets the fitness values for bi-objective problems with a complexity of O(n log n), where n stands for the population size + * @param _pop the population + */ + void twoObjectives (eoPop < MOEOT > & _pop) + { + //... TO DO ! + } + + + /** + * Sets the fitness values for problems with more than two objectives with a complexity of O(n² log n), where n stands for the population size + * @param _pop the population + */ + void mObjectives (eoPop < MOEOT > & _pop) + { + // S[i] = indexes of the individuals dominated by _pop[i] + std::vector < std::vector > S(_pop.size()); + // n[i] = number of individuals that dominate the individual _pop[i] + std::vector < unsigned > n(_pop.size(), 0); + // fronts: F[i] = indexes of the individuals contained in the ith front + std::vector < std::vector > F(_pop.size()+1); + // used to store the number of the first front + F[1].reserve(_pop.size()); + // flag to comparae solutions + int comparatorFlag; + for (unsigned p=0; p<_pop.size(); p++) + { + for (unsigned q=0; q<_pop.size(); q++) + { + // comparison of the 2 solutions according to Pareto dominance + comparatorFlag = comparator(_pop[p].objectiveVector(), _pop[q].objectiveVector()); + // if p dominates q + if (comparatorFlag == 1) + { + // add q to the set of solutions dominated by p + S[p].push_back(q); + } + // if q dominates p + else if (comparatorFlag == -1) + { + // increment the domination counter of p + n[p]++; + } + } + // if no individual dominates p + if (n[p] == 0) + { + // p belongs to the first front + _pop[p].fitness(1); + F[1].push_back(p); + } + } + // front counter + unsigned counter=1; + unsigned p,q; + while (! F[counter].empty()) + { + // used to store the number of the next front + F[counter+1].reserve(_pop.size()); + for (unsigned i=0; i +#include + +/** + * Functor that sets the fitness values of a whole population + */ +template < class MOEOT > +class moeoFitnessAssignment : public eoUF < eoPop < MOEOT > &, void > +{}; + + +/** + * moeoScalarFitnessAssignment is a moeoFitnessAssignment for scalar strategies + */ +template < class MOEOT > +class moeoScalarFitnessAssignment : public moeoFitnessAssignment < MOEOT > +{}; + + +/** + * moeoCriterionBasedFitnessAssignment is a moeoFitnessAssignment for criterion-based strategies + */ +template < class MOEOT > +class moeoCriterionBasedFitnessAssignment : public moeoFitnessAssignment < MOEOT > +{}; + + +/** + * moeoParetoBasedFitnessAssignment is a moeoFitnessAssignment for Pareto-based strategies + */ +template < class MOEOT > +class moeoParetoBasedFitnessAssignment : public moeoFitnessAssignment < MOEOT > +{}; + + +#endif /*MOEOFITNESSASSIGNMENT_H_*/ diff --git a/branches/paradiseo-moeo-1.0/src/moeoGenerationalReplacement.h b/branches/paradiseo-moeo-1.0/src/moeoGenerationalReplacement.h new file mode 100644 index 000000000..dc1a2e1d5 --- /dev/null +++ b/branches/paradiseo-moeo-1.0/src/moeoGenerationalReplacement.h @@ -0,0 +1,25 @@ +// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*- + +//----------------------------------------------------------------------------- +// moeoGenerationalReplacement.h +// (c) OPAC Team (LIFL), Dolphin Project (INRIA), 2007 +/* + This library... + + Contact: paradiseo-help@lists.gforge.inria.fr, http://paradiseo.gforge.inria.fr + */ +//----------------------------------------------------------------------------- + +#ifndef MOEOGENERATIONALREPLACEMENT_H_ +#define MOEOGENERATIONALREPLACEMENT_H_ + +#include +#include + +/** + * Generational replacement: only the new individuals are preserved + */ +template < class MOEOT > +class moeoGenerationalReplacement : public moeoReplacement < MOEOT >, public eoGenerationalReplacement < MOEOT > {}; + +#endif /*MOEOGENERATIONALREPLACEMENT_H_*/ diff --git a/branches/paradiseo-moeo-1.0/src/moeoHybridLS.h b/branches/paradiseo-moeo-1.0/src/moeoHybridLS.h new file mode 100644 index 000000000..f9ed01d36 --- /dev/null +++ b/branches/paradiseo-moeo-1.0/src/moeoHybridLS.h @@ -0,0 +1,74 @@ +// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*- + +//----------------------------------------------------------------------------- +// moeoHybridLS.h +// (c) OPAC Team (LIFL), Dolphin Project (INRIA), 2007 +/* + This library... + + Contact: paradiseo-help@lists.gforge.inria.fr, http://paradiseo.gforge.inria.fr + */ +//----------------------------------------------------------------------------- + +#ifndef MOEOHYBRIDLS_H_ +#define MOEOHYBRIDLS_H_ + +#include +#include +#include +#include +#include +#include + +/** + * This class allows to apply a multi-objective local search to a number of selected individuals contained in the archive + * at every generation until a stopping criteria is verified. + */ +template < class MOEOT > +class moeoHybridLS : public eoUpdater +{ +public: + + /** + * Ctor + * @param _term stopping criteria + * @param _select selector + * @param _ls a multi-objective local search + * @param _arch the archive + */ + eoHybridLS (eoContinue < MOEOT > & _term, eoSelect < MOEOT > & _select, moeoLS < MOEOT > & _ls, moeoArchive < MOEOT > & _arch) : term(_term), select(_select), ls(_ls), arch(_arch) + {} + + /** + * Applies the multi-objective local search to selected individuals contained in the archive if the stopping criteria is not verified + */ + void operator () () + { + if (! cont (arch)) + { + // selection of solutions + eoPop < MOEOT > selectedSolutions; + select(arch, selectedSolutions); + // apply the local search to every selected solution + for (unsigned i=0; i & term; + /** selector */ + eoSelect < MOEOT > & select; + /** multi-objective local search */ + moeoLS < MOEOT > & ls; + /** archive */ + moeoArchive < MOEOT > & arch; + +}; + +#endif /*MOEOHYBRIDLS_H_*/ diff --git a/branches/paradiseo-moeo-1.0/src/moeoLS.h b/branches/paradiseo-moeo-1.0/src/moeoLS.h new file mode 100644 index 000000000..f6cca796f --- /dev/null +++ b/branches/paradiseo-moeo-1.0/src/moeoLS.h @@ -0,0 +1,27 @@ +// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*- + +//----------------------------------------------------------------------------- +// moeoLS.h +// (c) OPAC Team (LIFL), Dolphin Project (INRIA), 2007 +/* + This library... + + Contact: paradiseo-help@lists.gforge.inria.fr, http://paradiseo.gforge.inria.fr + */ +//----------------------------------------------------------------------------- + +#ifndef MOEOLS_H_ +#define MOEOLS_H_ + +#include +#include + +/** + * Abstract class for local searches applied to multi-objective optimization. + * Starting from only one solution, it produces a set of new non-dominated solutions. + */ +template < class MOEOT > +class moeoLS: public eoBF < const MOEOT &, moeoArchive < MOEOT > &, void > +{}; + +#endif /*MOEOLS_H_*/ diff --git a/branches/paradiseo-moeo-1.0/src/moeoObjectiveVector.h b/branches/paradiseo-moeo-1.0/src/moeoObjectiveVector.h new file mode 100644 index 000000000..c5e7fcc86 --- /dev/null +++ b/branches/paradiseo-moeo-1.0/src/moeoObjectiveVector.h @@ -0,0 +1,231 @@ +// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*- + +//----------------------------------------------------------------------------- +// moeoObjectiveVector.h +// (c) OPAC Team (LIFL), Dolphin Project (INRIA), 2007 +/* + This library... + + Contact: paradiseo-help@lists.gforge.inria.fr, http://paradiseo.gforge.inria.fr + */ +//----------------------------------------------------------------------------- + +#ifndef MOEOOBJECTIVEVECTOR_H_ +#define MOEOOBJECTIVEVECTOR_H_ + +#include +#include +#include +#include + +/** + * Abstract class allowing to represent a solution in the objective space (phenotypic representation). + * The template argument ObjectiveVectorTraits defaults to moeoObjectiveVectorTraits, + * but it can be replaced at will by any other class that implements the static functions defined therein. + * Some static funtions to access to the traits characteristics are re-defined in order not to write a lot of typedef's. + */ +template < class ObjectiveVectorTraits > +class moeoObjectiveVector +{ +public: + + /** The traits of objective vectors */ + typedef ObjectiveVectorTraits Traits; + + + /** + * Parameters setting (for the objective vector of any solution) + * @param _nObjectives the number of objectives + * @param _bObjectives the min/max vector (true = min / false = max) + */ + static void setup(unsigned _nObjectives, std::vector < bool > & _bObjectives) + { + ObjectiveVectorTraits::setup(_nObjectives, _bObjectives); + } + + + /** + * Returns the number of objectives + */ + static unsigned nObjectives() + { + return ObjectiveVectorTraits::nObjectives(); + } + + + /** + * Returns true if the _ith objective have to be minimized + * @param _i the index + */ + static bool minimizing(unsigned _i) { + return ObjectiveVectorTraits::minimizing(_i); + } + + + /** + * Returns true if the _ith objective have to be maximized + * @param _i the index + */ + static bool maximizing(unsigned _i) { + return ObjectiveVectorTraits::maximizing(_i); + } + +}; + + +/** + * This class allows to represent a solution in the objective space (phenotypic representation) by a std::vector of doubles, + * i.e. that an objective value is represented using a double, and this for any objective. + */ +template < class ObjectiveVectorTraits > +class moeoObjectiveVectorDouble : public moeoObjectiveVector < ObjectiveVectorTraits >, public std::vector < double > +{ +public: + + using std::vector< double >::size; + using std::vector< double >::operator[]; + + /** + * Ctor + */ + moeoObjectiveVectorDouble() : std::vector < double > (ObjectiveVectorTraits::nObjectives(), 0.0) {} + + + /** + * Ctor from a vector of doubles + * @param _v the std::vector < double > + */ + moeoObjectiveVectorDouble(std::vector & _v) : std::vector < double > (_v) {} + + + /** + * Returns true if the current objective vector dominates _other according to the Pareto dominance relation + * (but it's better to use a moeoObjectiveVectorComparator object to compare solutions) + * @param _other the other moeoObjectiveVectorDouble object to compare with + */ + bool dominates(const moeoObjectiveVectorDouble < ObjectiveVectorTraits > & _other) const + { + moeoParetoObjectiveVectorComparator < moeoObjectiveVectorDouble > comparator; + return comparator(*this, _other)==1; + } + + + /** + * Returns true if the current objective vector is equal to _other (according to a tolerance value) + * @param _other the other moeoObjectiveVectorDouble object to compare with + */ + bool operator==(const moeoObjectiveVectorDouble < ObjectiveVectorTraits > & _other) const + { + for (unsigned i=0; i < size(); i++) + { + if ( fabs(operator[](i) - _other[i]) > ObjectiveVectorTraits::tolerance() ) + { + return false; + } + } + return true; + } + + + /** + * Returns true if the current objective vector is different than _other (according to a tolerance value) + * @param _other the other moeoObjectiveVectorDouble object to compare with + */ + bool operator!=(const moeoObjectiveVectorDouble < ObjectiveVectorTraits > & _other) const + { + return ! operator==(_other); + } + + + /** + * Returns true if the current objective vector is smaller than _other on the first objective, then on the second, and so on + * (can be usefull for sorting/printing) + * @param _other the other moeoObjectiveVectorDouble object to compare with + */ + bool operator<(const moeoObjectiveVectorDouble < ObjectiveVectorTraits > & _other) const + { + for (unsigned i=0; i < size(); i++) + { + if ( fabs(operator[](i) - _other[i]) > ObjectiveVectorTraits::tolerance() ) + { + if (operator[](i) < _other[i]) + { + return true; + } + else + { + return false; + } + } + } + return false; + } + + + /** + * Returns true if the current objective vector is greater than _other on the first objective, then on the second, and so on + * (can be usefull for sorting/printing) + * @param _other the other moeoObjectiveVectorDouble object to compare with + */ + bool operator>(const moeoObjectiveVectorDouble < ObjectiveVectorTraits > & _other) const + { + return _other < *this; + } + + + /** + * Returns true if the current objective vector is smaller than or equal to _other on the first objective, then on the second, and so on + * (can be usefull for sorting/printing) + * @param _other the other moeoObjectiveVectorDouble object to compare with + */ + bool operator<=(const moeoObjectiveVectorDouble < ObjectiveVectorTraits > & _other) const + { + return operator==(_other) || operator<(_other); + } + + + /** + * Returns true if the current objective vector is greater than or equal to _other on the first objective, then on the second, and so on + * (can be usefull for sorting/printing) + * @param _other the other moeoObjectiveVectorDouble object to compare with + */ + bool operator>=(const moeoObjectiveVectorDouble < ObjectiveVectorTraits > & _other) const + { + return operator==(_other) || operator>(_other); + } + +}; + + +/** + * Output for a moeoObjectiveVectorDouble object + * @param _os output stream + * @param _objectiveVector the objective vector to write + */ +template < class ObjectiveVectorTraits > +std::ostream & operator<<(std::ostream & _os, const moeoObjectiveVectorDouble < ObjectiveVectorTraits > & _objectiveVector) +{ + for (unsigned i=0; i<_objectiveVector.size(); i++) + { + _os << _objectiveVector[i] << ' '; + } + return _os; +} + +/** + * Input for a moeoObjectiveVectorDouble object + * @param _is input stream + * @param _objectiveVector the objective vector to read + */ +template < class ObjectiveVectorTraits > +std::istream & operator>>(std::istream & _is, moeoObjectiveVectorDouble < ObjectiveVectorTraits > & _objectiveVector) +{ + _objectiveVector = moeoObjectiveVectorDouble < ObjectiveVectorTraits > (); + for (unsigned i=0; i<_objectiveVector.size(); i++) + { + _is >> _objectiveVector[i]; + } + return _is; +} + +#endif /*MOEOOBJECTIVEVECTOR_H_*/ diff --git a/branches/paradiseo-moeo-1.0/src/moeoObjectiveVectorComparator.h b/branches/paradiseo-moeo-1.0/src/moeoObjectiveVectorComparator.h new file mode 100644 index 000000000..aa9144f4d --- /dev/null +++ b/branches/paradiseo-moeo-1.0/src/moeoObjectiveVectorComparator.h @@ -0,0 +1,89 @@ +// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*- + +//----------------------------------------------------------------------------- +// moeoObjectiveVectorComparator.h +// (c) OPAC Team (LIFL), Dolphin Project (INRIA), 2007 +/* + This library... + + Contact: paradiseo-help@lists.gforge.inria.fr, http://paradiseo.gforge.inria.fr + */ +//----------------------------------------------------------------------------- + +#ifndef MOEOOBJECTIVEVECTORCOMPARATOR_H_ +#define MOEOOBJECTIVEVECTORCOMPARATOR_H_ + +#include +#include + +/** + * Abstract class allowing to compare 2 objective vectors. + * The template argument ObjectiveVector have to be a moeoObjectiveVector. + */ +template < class ObjectiveVector > +class moeoObjectiveVectorComparator : public eoBF < const ObjectiveVector &, const ObjectiveVector &, int > +{}; + + +/** + * This functor class allows to compare 2 objective vectors according to Pareto dominance + */ +template < class ObjectiveVector > +class moeoParetoObjectiveVectorComparator : public moeoObjectiveVectorComparator < ObjectiveVector > +{ +public: + + /** + * Returns 1 if _objectiveVector1 dominates _objectiveVector2, -1 if _objectiveVector2 dominates _objectiveVector1 and 0 if no one dominates the other + * @param _objectiveVector1 the first objective vector + * @param _objectiveVector2 the second objective vector + */ + int operator()(const ObjectiveVector & _objectiveVector1, const ObjectiveVector & _objectiveVector2) + { + bool dom1 = false; + bool dom2 = false; + for (unsigned i=0; i ObjectiveVector::Traits::tolerance() ) + { + // if the ith objective have to be minimized... + if (ObjectiveVector::minimizing(i)) + { + if (_objectiveVector1[i] > _objectiveVector2[i]) + { + dom2 = true; //_objectiveVector2[i] is better than _objectiveVector1[i] + } + else // _objectiveVector1[i] < _objectiveVector2[i] + { + dom1 = true; //_objectiveVector1[i] is better than _objectiveVector2[i] + } + } + // if the ith objective have to be maximized... + else if (ObjectiveVector::maximizing(i)) + { + if (_objectiveVector1[i] > _objectiveVector2[i]) + { + dom1 = true; //_objectiveVector1[i] is better than _objectiveVector2[i] + } + else // _objectiveVector1[i] < _objectiveVector2[i] + { + dom2 = true; //_objectiveVector2[i] is better than _objectiveVector1[i] + } + } + } + } + if (dom1 == dom2) + { + return 0; // no one dominates the other + } + if (dom1) + { + return 1; //_objectiveVector1 dominates _objectiveVector2 + } + return -1; //_objectiveVector2 dominates _objectiveVector1 + } + +}; + +#endif /*MOEOOBJECTIVEVECTORCOMPARATOR_H_*/ diff --git a/branches/paradiseo-moeo-1.0/src/moeoObjectiveVectorTraits.h b/branches/paradiseo-moeo-1.0/src/moeoObjectiveVectorTraits.h new file mode 100644 index 000000000..f47e01fe4 --- /dev/null +++ b/branches/paradiseo-moeo-1.0/src/moeoObjectiveVectorTraits.h @@ -0,0 +1,111 @@ +// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*- + +//----------------------------------------------------------------------------- +// moeoObjectiveVectorTraits.h +// (c) OPAC Team (LIFL), Dolphin Project (INRIA), 2007 +/* + This library... + + Contact: paradiseo-help@lists.gforge.inria.fr, http://paradiseo.gforge.inria.fr + */ +//----------------------------------------------------------------------------- + +#ifndef MOEOOBJECTIVEVECTORTRAITS_H_ +#define MOEOOBJECTIVEVECTORTRAITS_H_ + +#include +#include +#include + +/** + * A traits class for moeoObjectiveVector to specify the number of objectives and which ones have to be minimized or maximized + */ +class moeoObjectiveVectorTraits +{ +public: + + /** The tolerance value (used to compare solutions) */ + const static double tol = 1e-6; + + /** + * Parameters setting + * @param _nObjectives the number of objectives + * @param _bObjectives the min/max vector (true = min / false = max) + */ + static void setup(unsigned _nObjectives, std::vector < bool > & _bObjectives) + { + // in case the number of objectives was already set to a different value + if ( nObj && (nObj != _nObjectives) ) { + std::cout << "WARNING\n"; + std::cout << "WARNING : the number of objectives are changing\n"; + std::cout << "ARNING : Make sure all existing objects are destroyed\n"; + std::cout << "WARNING\n"; + } + // number of objectives + nObj = _nObjectives; + // min/max vector + bObj = _bObjectives; + // in case the number of objectives and the min/max vector size don't match + if (nObj != bObj.size()) + throw std::runtime_error("Number of objectives and min/max size don't match in moeoObjectiveVectorTraits::setup"); + } + + /** + * Returns the number of objectives + */ + static unsigned nObjectives() + { + // in case the number of objectives would not be assigned yet + if (! nObj) + throw std::runtime_error("Number of objectives not assigned in moeoObjectiveVectorTraits"); + return nObj; + } + + /** + * Returns true if the _ith objective have to be minimized + * @param _i the index + */ + static bool minimizing(unsigned _i) + { + // in case the min/max vector would not be assigned yet + if (! bObj[_i]) + throw std::runtime_error("We don't know if the ith objective have to be minimized or maximized in moeoObjectiveVectorTraits"); + // in case there would be a wrong index + if (_i >= bObj.size()) + throw std::runtime_error("Wrong index in moeoObjectiveVectorTraits"); + return bObj[_i]; + } + + /** + * Returns true if the _ith objective have to be maximized + * @param _i the index + */ + static bool maximizing(unsigned _i) { + return (! minimizing(_i)); + } + + /** + * Returns the tolerance value (to compare solutions) + */ + static double tolerance() + { + return tol; + } + + +private: + + /** The number of objectives */ + static unsigned nObj; + /** The min/max vector */ + static std::vector < bool > bObj; + +}; + +#endif /*MOEOOBJECTIVEVECTORTRAITS_H_*/ + + +// The static variables of the moeoObjectiveVectorTraits class need to be allocated +// (maybe it would have been better to put this on a moeoObjectiveVectorTraits.cpp file) +unsigned moeoObjectiveVectorTraits::nObj; +std::vector < bool > moeoObjectiveVectorTraits::bObj; diff --git a/branches/paradiseo-moeo-1.0/src/moeoRandomSelectOne.h b/branches/paradiseo-moeo-1.0/src/moeoRandomSelectOne.h new file mode 100644 index 000000000..817a33b27 --- /dev/null +++ b/branches/paradiseo-moeo-1.0/src/moeoRandomSelectOne.h @@ -0,0 +1,25 @@ +// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*- + +//----------------------------------------------------------------------------- +// moeoRandomSelectOne.h +// (c) OPAC Team (LIFL), Dolphin Project (INRIA), 2007 +/* + This library... + + Contact: paradiseo-help@lists.gforge.inria.fr, http://paradiseo.gforge.inria.fr + */ +//----------------------------------------------------------------------------- + +#ifndef MOEORANDOMSELECTONE_H_ +#define MOEORANDOMSELECTONE_H_ + +#include +#include + +/** + * Selection strategy that selects only one element randomly from a whole population + */ +template < class MOEOT > +class moeoRandomSelectOne : public moeoSelectOne < MOEOT >, public eoRandomSelect < MOEOT > {}; + +#endif /*MOEORANDOMSELECTONE_H_*/ diff --git a/branches/paradiseo-moeo-1.0/src/moeoReplacement.h b/branches/paradiseo-moeo-1.0/src/moeoReplacement.h new file mode 100644 index 000000000..26efa7a27 --- /dev/null +++ b/branches/paradiseo-moeo-1.0/src/moeoReplacement.h @@ -0,0 +1,24 @@ +// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*- + +//----------------------------------------------------------------------------- +// moeoReplacement.h +// (c) OPAC Team (LIFL), Dolphin Project (INRIA), 2007 +/* + This library... + + Contact: paradiseo-help@lists.gforge.inria.fr, http://paradiseo.gforge.inria.fr + */ +//----------------------------------------------------------------------------- + +#ifndef MOEOREPLACEMENT_H_ +#define MOEOREPLACEMENT_H_ + +#include + +/** + * Replacement strategy for multi-objective optimization + */ +template < class MOEOT > +class moeoReplacement : public eoReplacement < MOEOT > {}; + +#endif /*MOEOREPLACEMENT_H_*/ diff --git a/branches/paradiseo-moeo-1.0/src/moeoSelectOne.h b/branches/paradiseo-moeo-1.0/src/moeoSelectOne.h new file mode 100644 index 000000000..1f1f5689e --- /dev/null +++ b/branches/paradiseo-moeo-1.0/src/moeoSelectOne.h @@ -0,0 +1,24 @@ +// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*- + +//----------------------------------------------------------------------------- +// moeoSelectOne.h +// (c) OPAC Team (LIFL), Dolphin Project (INRIA), 2007 +/* + This library... + + Contact: paradiseo-help@lists.gforge.inria.fr, http://paradiseo.gforge.inria.fr + */ +//----------------------------------------------------------------------------- + +#ifndef MOEOSELECTONE_H_ +#define MOEOSELECTONE_H_ + +#include + +/** + * Selection strategy for multi-objective optimization that selects only one element from a whole population + */ +template < class MOEOT > +class moeoSelectOne : public eoSelectOne < MOEOT > {}; + +#endif /*MOEOSELECTONE_H_*/ diff --git a/branches/paradiseo-moeo-1.0/src/moeoSelectOneFromPopAndArch.h b/branches/paradiseo-moeo-1.0/src/moeoSelectOneFromPopAndArch.h new file mode 100644 index 000000000..910c4b44d --- /dev/null +++ b/branches/paradiseo-moeo-1.0/src/moeoSelectOneFromPopAndArch.h @@ -0,0 +1,87 @@ +// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*- + +//----------------------------------------------------------------------------- +// moeoSelectOneFormPopAndArch.h +// (c) OPAC Team (LIFL), Dolphin Project (INRIA), 2007 +/* + This library... + + Contact: paradiseo-help@lists.gforge.inria.fr, http://paradiseo.gforge.inria.fr + */ +//----------------------------------------------------------------------------- + +#ifndef MOEOSELECTONEFROMPOPANDARCH_H_ +#define MOEOSELECTONEFROMPOPANDARCH_H_ + +#include +#include +#include +#include +#include + +/** + * Elitist selection process that consists in choosing individuals in the archive as well as in the current population. + */ +template +class moeoSelectOneFromPopAndArch : public moeoSelectOne +{ +public: + + /** + * Ctor + * @param _popSelectOne the population's selection operator + * @param _archSelectOne the archive's selection operator + * @param _arch the archive + * @param _ratioFromPop the ratio of selected individuals from the population + */ + moeoSelectOneFromPopAndArch (moeoSelectOne & _popSelectOne, moeoSelectOne _archSelectOne, moeoArchive & _arch, double _ratioFromPop=0.5) + : popSelectOne(_popSelectOne), archSelectOne(_archSelectOne), arch(_arch), ratioFromPop(_ratioFromPop) + {} + + /** + * Ctor - the archive's selection operator is a random selector + * @param _popSelectOne the population's selection operator + * @param _arch the archive + * @param _ratioFromPop the ratio of selected individuals from the population + */ + moeoSelectOneFromPopAndArch (moeoSelectOne & _popSelectOne, moeoArchive & _arch, double _ratioFromPop=0.5) + : popSelectOne(_popSelectOne), archSelectOne(randomSelectOne), arch(_arch), ratioFromPop(_ratioFromPop) + {} + + /** + * The selection process + */ + virtual const EOT & operator () (const eoPop & pop) { + if (arch.size() > 0) + if (rng.flip(ratioFromPop)) + return popSelectOne(pop); + else + return archSelectOne(arch); + else + return popSelectOne(pop); + } + + /** + * Setups some population stats + */ + virtual void setup (const eoPop & _pop) { + popSelectOne.setup(_pop); + } + + +private: + + /** The population's selection operator */ + moeoSelectOne & popSelectOne; + /** The archive's selection operator */ + moeoSelectOne & archSelectOne; + /** The archive */ + moeoArchive & arch; + /** The ratio of selected individuals from the population*/ + double ratioFromPop; + /** A random selection operator */ + moeoRandomSelectOne randomSelectOne; + +}; + +#endif /*MOEOSELECTONEFROMPOPANDARCH_H_*/ diff --git a/branches/paradiseo-moeo-1.0/tutorials/Makefile.am b/branches/paradiseo-moeo-1.0/tutorials/Makefile.am new file mode 100644 index 000000000..40441b3b9 --- /dev/null +++ b/branches/paradiseo-moeo-1.0/tutorials/Makefile.am @@ -0,0 +1 @@ +SUBDIRS=lesson1 diff --git a/branches/paradiseo-moeo-1.0/tutorials/lesson1/FlowShopEA.param b/branches/paradiseo-moeo-1.0/tutorials/lesson1/FlowShopEA.param new file mode 100644 index 000000000..c70b0b1a7 --- /dev/null +++ b/branches/paradiseo-moeo-1.0/tutorials/lesson1/FlowShopEA.param @@ -0,0 +1,51 @@ + +###### General ###### +# --help=0 # -h : Prints this message +# --stopOnUnknownParam=1 # Stop if unkown param entered +# --seed=1165485212 # -S : Random number seed + +###### Evolution Engine ###### +--popSize=20 # -P : Population Size +--selCrit=NSGA-II # -S : Multi-objective selection criterion: NSGA, NSGA-II, IBEA, ParetoRanking, ParetoSharing +--nicheSize=1 # -n : Size of niche for NSGA-I or ParetoSharing +--kappa=0.05 # -k : Scaling factor kappa for IBEA +--indicator=Epsilon # -I : Binary quality indicator for IBEA : Epsilon, Hypervolume +--rho=1.1 # -r : reference point for the hypervolume calculation (must not be smaller than 1) +--selection=DetTour(2) # -s : Selection: Roulette, DetTour(T), StochTour(t) or Random +--elitism=0 # -E : Use elitism in the selection process (individuals from the archive are randomly selected) +--ratio=0.8 # Ratio from the population for elitism (must not be greater than 1) +--nbOffspring=100% # -O : Nb of offspring (percentage or absolute) +--replacement=Plus # -R : Replacement: Plus, DistinctPlus or Generational + +###### Output ###### +--useEval=1 # Use nb of eval. as counter (vs nb of gen.) +--printPop=0 # Print sorted pop. every gen. + +###### Output - Disk ###### +--resDir=Res # Directory to store DISK outputs +--eraseDir=1 # erase files in dirName if any +--frontFileFrequency=1(0,1) # File save frequency in objective spaces (std::pairs of comma-separated objectives in 1 single parentheses std::pair) + +###### Output - Graphical ###### +--plotFront=0 # Objective plots (requires corresponding files - see frontFileFrequency + +###### Persistence ###### +# --Load= # -L : A save file to restart from +--recomputeFitness=0 # -r : Recompute the fitness after re-loading the pop.? +--saveFrequency=0 # Save every F generation (0 = only final state, absent = never) +--saveTimeInterval=0 # Save every T seconds (0 or absent = never) +--status=./FlowShopEA.status # Status file + +###### Representation ###### +--BenchmarkFile=benchmarks/020_05_01.txt # -B : Benchmark file name (benchmarks are available at www.lifl.fr/~basseur/BenchsUncertain/) REQUIRED + +###### Stopping criterion ###### +--maxGen=100 # -G : Maximum number of generations () = none) +--CtrlC=1 # -C : Terminate current generation upon Ctrl C + +###### Variation Operators ###### +--crossRate=1 # Relative rate for the only crossover +--shiftMutRate=0.5 # Relative rate for shift mutation +--exchangeMutRate=0.5 # Relative rate for exchange mutation +--pCross=0.25 # -c : Probability of Crossover +--pMut=0.35 # -m : Probability of Mutation diff --git a/branches/paradiseo-moeo-1.0/tutorials/lesson1/Makefile.am b/branches/paradiseo-moeo-1.0/tutorials/lesson1/Makefile.am new file mode 100644 index 000000000..26370a030 --- /dev/null +++ b/branches/paradiseo-moeo-1.0/tutorials/lesson1/Makefile.am @@ -0,0 +1,9 @@ + +noinst_PROGRAMS = FlowShopEA + +FlowShopEA_SOURCES = FlowShopEA.cpp + +LDADD = -L$(top_builddir)/src ${EO_DIR}/src/libeo.a ${EO_DIR}/src/utils/libeoutils.a + +INCLUDES = -I${EO_DIR}/src/ -I$(top_srcdir)/src + diff --git a/branches/paradiseo-moeo-1.0/tutorials/lesson1/benchmarks/020_05_01.txt b/branches/paradiseo-moeo-1.0/tutorials/lesson1/benchmarks/020_05_01.txt new file mode 100644 index 000000000..2c2f78d86 --- /dev/null +++ b/branches/paradiseo-moeo-1.0/tutorials/lesson1/benchmarks/020_05_01.txt @@ -0,0 +1,63 @@ +20 +5 +873654221 +0 +468 +54 79 16 66 58 +1 +325 +83 3 89 58 56 +2 +923 +15 11 49 31 20 +3 +513 +71 99 15 68 85 +4 +1070 +77 56 89 78 53 +5 +690 +36 70 45 91 35 +6 +602 +53 99 60 13 53 +7 +289 +38 60 23 59 41 +8 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a/branches/paradiseo-moeo-1.0/tutorials/lesson1/benchmarks/050_20_01.txt b/branches/paradiseo-moeo-1.0/tutorials/lesson1/benchmarks/050_20_01.txt new file mode 100644 index 000000000..23ccddab3 --- /dev/null +++ b/branches/paradiseo-moeo-1.0/tutorials/lesson1/benchmarks/050_20_01.txt @@ -0,0 +1,153 @@ +50 +20 +1539989115 +0 +2509 +52 63 82 16 63 94 79 22 80 96 53 54 71 27 95 3 92 80 61 74 +1 +2039 +95 99 21 26 55 34 21 6 13 3 19 67 90 93 53 80 62 38 86 38 +2 +3096 +42 69 79 46 59 89 93 24 64 50 99 25 59 49 54 78 11 55 16 4 +3 +2950 +75 70 95 66 35 62 32 55 77 57 62 77 82 63 22 32 83 34 42 31 +4 +1249 +44 53 46 76 21 47 8 48 17 66 88 38 22 65 84 53 87 85 14 62 +5 +2481 +57 21 23 31 59 66 45 57 78 84 93 98 88 34 54 43 66 44 92 39 +6 +3193 +89 10 40 36 78 76 37 78 82 98 34 96 35 10 2 85 98 47 67 97 +7 +3253 +53 31 95 8 25 15 78 5 4 55 72 20 49 56 80 19 42 66 77 57 +8 +2123 +84 80 87 37 30 18 26 50 72 70 42 15 78 51 84 48 23 19 46 9 +9 +2390 +62 18 37 21 38 54 98 83 93 32 65 36 69 97 66 49 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flow-shop scheduling problem are available at http://www.lifl.fr/~liefooga/benchmarks/ \ No newline at end of file diff --git a/branches/paradiseo-moeo-1.0/tutorials/lesson2/Makefile.am b/branches/paradiseo-moeo-1.0/tutorials/lesson2/Makefile.am new file mode 100644 index 000000000..086363914 --- /dev/null +++ b/branches/paradiseo-moeo-1.0/tutorials/lesson2/Makefile.am @@ -0,0 +1,9 @@ + +noinst_PROGRAMS = Sch1 + +Sch1_SOURCES = Sch1.cpp + +LDADD = -L$(top_builddir)/src ${EO_DIR}/src/libeo.a ${EO_DIR}/src/utils/libeoutils.a + +INCLUDES = -I${EO_DIR}/src/ -I$(top_srcdir)/src +