added permut components
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tlegrand
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4 changed files with 305 additions and 0 deletions
58
eo/src/eoInt.h
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58
eo/src/eoInt.h
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/*
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eoInt.h
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// (c) Marc Schoenauer, Maarten Keijzer and GeNeura Team, 2000
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This library is free software; you can redistribute it and/or
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modify it under the terms of the GNU Lesser General Public
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License as published by the Free Software Foundation; either
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version 2 of the License, or (at your option) any later version.
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This library is distributed in the hope that it will be useful,
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but WITHOUT ANY WARRANTY; without even the implied warranty of
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MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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Lesser General Public License for more details.
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You should have received a copy of the GNU Lesser General Public
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License along with this library; if not, write to the Free Software
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Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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Contact: thomas.legrand@lifl.fr
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todos@geneura.ugr.es, http://geneura.ugr.es
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mkeijzer@dhi.dk
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*/
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#ifndef eoInt_h
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#define eoInt_h
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//-----------------------------------------------------------------------------
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#include <iostream> // std::ostream, std::istream
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#include <string> // std::string
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#include <eoVector.h>
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/** eoInt: implementation of simple integer-valued chromosome.
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* based on eoVector class
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*/
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template <class FitT> class eoInt: public eoVector<FitT, int>
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{
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public:
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/**
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* (Default) Constructor.
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* @param size Size of the std::vector
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*/
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eoInt(unsigned size = 0, int value = 0):
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eoVector<FitT, int>(size, value) {}
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/// My class name.
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virtual std::string className() const
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{
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return "eoInt";
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}
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};
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//-----------------------------------------------------------------------------
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#endif
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88
eo/src/eoShiftMutation.h
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88
eo/src/eoShiftMutation.h
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// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
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//-----------------------------------------------------------------------------
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// eoShiftMutation.h
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// (c) GeNeura Team, 2000 - EEAAX 2000 - Maarten Keijzer 2000
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// (c) INRIA Futurs - Dolphin Team - Thomas Legrand 2007
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/*
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This library is free software; you can redistribute it and/or
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modify it under the terms of the GNU Lesser General Public
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License as published by the Free Software Foundation; either
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version 2 of the License, or (at your option) any later version.
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This library is distributed in the hope that it will be useful,
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but WITHOUT ANY WARRANTY; without even the implied warranty of
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MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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Lesser General Public License for more details.
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You should have received a copy of the GNU Lesser General Public
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License along with this library; if not, write to the Free Software
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Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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Contact: todos@geneura.ugr.es, http://geneura.ugr.es
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thomas.legrand@lifl.fr
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Marc.Schoenauer@polytechnique.fr
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mak@dhi.dk
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*/
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//-----------------------------------------------------------------------------
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#ifndef eoShiftMutation_h
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#define eoShiftMutation_h
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//-----------------------------------------------------------------------------
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/**
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* Shift two components of a chromosome.
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*/
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template<class EOT> class eoShiftMutation: public eoMonOp<EOT>
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{
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public:
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typedef typename EOT::AtomType GeneType;
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/// CTor
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eoShiftMutation(){}
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/// The class name.
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virtual std::string className() const { return "eoShiftMutation"; }
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/**
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* Shift two components of the given eoosome.
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* @param eo The cromosome which is going to be changed.
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*/
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bool operator()(EOT& _eo)
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{
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unsigned i, j, from, to;
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GeneType tmp;
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// generate two different indices
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i=eo::rng.random(_eo.size());
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do j = eo::rng.random(_eo.size()); while (i == j);
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// indexes
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from=std::min(i,j);
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to=std::max(i,j);
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// keep the first component to change
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tmp=_eo[to];
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// shift
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for(unsigned int k=to ; k > from ; k--)
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_eo[k]=_eo[k-1];
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// shift the first component
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_eo[from]=tmp;
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return true;
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}
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};
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//-----------------------------------------------------------------------------
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#endif
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79
eo/src/eoSwapMutation.h
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79
eo/src/eoSwapMutation.h
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@ -0,0 +1,79 @@
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// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
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//-----------------------------------------------------------------------------
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// eoSwapMutation.h
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// (c) GeNeura Team, 2000 - EEAAX 2000 - Maarten Keijzer 2000
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// (c) INRIA Futurs - Dolphin Team - Thomas Legrand 2007
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/*
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This library is free software; you can redistribute it and/or
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modify it under the terms of the GNU Lesser General Public
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License as published by the Free Software Foundation; either
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version 2 of the License, or (at your option) any later version.
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This library is distributed in the hope that it will be useful,
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but WITHOUT ANY WARRANTY; without even the implied warranty of
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MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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Lesser General Public License for more details.
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You should have received a copy of the GNU Lesser General Public
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License along with this library; if not, write to the Free Software
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Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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Contact: todos@geneura.ugr.es, http://geneura.ugr.es
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thomas.legrand@lifl.fr
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Marc.Schoenauer@polytechnique.fr
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mak@dhi.dk
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*/
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//-----------------------------------------------------------------------------
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#ifndef eoSwapMutation_h
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#define eoSwapMutation_h
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//-----------------------------------------------------------------------------
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/**
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* Swap two components of a chromosome.
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*/
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template<class Chrom> class eoSwapMutation: public eoMonOp<Chrom>
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{
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public:
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/// CTor
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eoSwapMutation(const unsigned _howManySwaps=1): howManySwaps(_howManySwaps)
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{
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// consistency check
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if(howManySwaps < 1)
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throw std::runtime_error("Invalid number of swaps in eoSwapMutation");
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}
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/// The class name.
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virtual std::string className() const { return "eoSwapMutation"; }
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/**
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* Swap two components of the given chromosome.
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* @param chrom The cromosome which is going to be changed.
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*/
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bool operator()(Chrom& chrom)
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{
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unsigned i, j;
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for(unsigned int swap = 0; swap < howManySwaps; swap++)
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{
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// generate two different indices
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i=eo::rng.random(chrom.size());
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do j = eo::rng.random(chrom.size()); while (i == j);
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// swap
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std::swap(chrom[i],chrom[j]);
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}
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return true;
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}
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private:
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unsigned int howManySwaps;
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};
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//-----------------------------------------------------------------------------
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#endif
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80
eo/src/eoTwoOptMutation.h
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80
eo/src/eoTwoOptMutation.h
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@ -0,0 +1,80 @@
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// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
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//-----------------------------------------------------------------------------
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// eoTwoOptMutation.h
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// (c) GeNeura Team, 2000 - EEAAX 2000 - Maarten Keijzer 2000
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// (c) INRIA Futurs - Dolphin Team - Thomas Legrand 2007
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/*
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This library is free software; you can redistribute it and/or
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modify it under the terms of the GNU Lesser General Public
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License as published by the Free Software Foundation; either
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version 2 of the License, or (at your option) any later version.
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This library is distributed in the hope that it will be useful,
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but WITHOUT ANY WARRANTY; without even the implied warranty of
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MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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Lesser General Public License for more details.
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You should have received a copy of the GNU Lesser General Public
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License along with this library; if not, write to the Free Software
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Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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Contact: todos@geneura.ugr.es, http://geneura.ugr.es
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thomas.legrand@lifl.fr
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Marc.Schoenauer@polytechnique.fr
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mak@dhi.dk
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*/
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//-----------------------------------------------------------------------------
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#ifndef eoTwoOptMutation_h
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#define eoTwoOptMutation_h
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//-----------------------------------------------------------------------------
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/**
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* Especially designed for combinatorial problem such as the TSP.
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*/
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template<class EOT> class eoTwoOptMutation: public eoMonOp<EOT>
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{
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public:
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typedef typename EOT::AtomType GeneType;
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/// CTor
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eoTwoOptMutation(){}
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/// The class name.
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virtual std::string className() const { return "eoTwoOptMutation"; }
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/**
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*
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* @param eo The cromosome which is going to be changed.
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*/
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bool operator()(EOT& _eo)
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{
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unsigned i,j,from,to;
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// generate two different indices
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i=eo::rng.random(_eo.size());
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do j = eo::rng.random(_eo.size()); while (i == j);
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from=std::min(i,j);
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to=std::max(i,j);
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int idx =(to-from)/2;
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// inverse between from and to
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for(unsigned int k = 0; k <= idx ;k++)
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std::swap(_eo[from+k],_eo[to-k]);
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return true;
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}
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};
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//-----------------------------------------------------------------------------
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#endif
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