Documentation updated

git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1692 331e1502-861f-0410-8da2-ba01fb791d7f

branches/newMo/doc/mo.doxyfile.cmake

@@ -109,7 +109,7 @@ ALWAYS_DETAILED_SEC    = NO
 # members were ordinary class members. Constructors, destructors and assignment 
 # operators of the base classes will not be shown.
 
-INLINE_INHERITED_MEMB  = NO
+INLINE_INHERITED_MEMB  = YES
 
 # If the FULL_PATH_NAMES tag is set to YES then Doxygen will prepend the full 
 # path before files name in the file list and in the header files. If set 
@@ -139,7 +139,7 @@ STRIP_FROM_INC_PATH    =
 # (but less readable) file names. This can be useful is your file systems 
 # doesn't support long names like on DOS, Mac, or CD-ROM.
 
-SHORT_NAMES            = NO
+SHORT_NAMES            = YES
 
 # If the JAVADOC_AUTOBRIEF tag is set to YES then Doxygen 
 # will interpret the first line (until the first dot) of a JavaDoc-style 
@@ -235,7 +235,7 @@ EXTENSION_MAPPING      =
 # func(std::string) {}). This also make the inheritance and collaboration 
 # diagrams that involve STL classes more complete and accurate.
 
-BUILTIN_STL_SUPPORT    = NO
+BUILTIN_STL_SUPPORT    = YES
 
 # If you use Microsoft's C++/CLI language, you should set this option to YES to 
 # enable parsing support.
@@ -480,7 +480,7 @@ SHOW_USED_FILES        = YES
 # then setting the SHOW_DIRECTORIES tag to YES will show the directory hierarchy 
 # in the documentation. The default is NO.
 
-SHOW_DIRECTORIES       = NO
+SHOW_DIRECTORIES       = YES
 
 # Set the SHOW_FILES tag to NO to disable the generation of the Files page. 
 # This will remove the Files entry from the Quick Index and from the 
@@ -1352,7 +1352,7 @@ HIDE_UNDOC_RELATIONS   = YES
 # toolkit from AT&T and Lucent Bell Labs. The other options in this section 
 # have no effect if this option is set to NO (the default)
 
-HAVE_DOT               = NO
+HAVE_DOT               = YES
 
 # By default doxygen will write a font called FreeSans.ttf to the output 
 # directory and reference it in all dot files that doxygen generates. This 
@@ -1389,7 +1389,7 @@ CLASS_GRAPH            = YES
 # indirect implementation dependencies (inheritance, containment, and 
 # class references variables) of the class with other documented classes.
 
-COLLABORATION_GRAPH    = YES
+COLLABORATION_GRAPH    = NO
 
 # If the GROUP_GRAPHS and HAVE_DOT tags are set to YES then doxygen 
 # will generate a graph for groups, showing the direct groups dependencies
@@ -1400,12 +1400,12 @@ GROUP_GRAPHS           = YES
 # collaboration diagrams in a style similar to the OMG's Unified Modeling 
 # Language.
 
-UML_LOOK               = NO
+UML_LOOK               = YES
 
 # If set to YES, the inheritance and collaboration graphs will show the 
 # relations between templates and their instances.
 
-TEMPLATE_RELATIONS     = NO
+TEMPLATE_RELATIONS     = YES
 
 # If the ENABLE_PREPROCESSING, SEARCH_INCLUDES, INCLUDE_GRAPH, and HAVE_DOT 
 # tags are set to YES then doxygen will generate a graph for each documented 
@@ -1427,7 +1427,7 @@ INCLUDED_BY_GRAPH      = YES
 # the time of a run. So in most cases it will be better to enable call graphs 
 # for selected functions only using the \callgraph command.
 
-CALL_GRAPH             = NO
+CALL_GRAPH             = YES
 
 # If the CALLER_GRAPH and HAVE_DOT tags are set to YES then 
 # doxygen will generate a caller dependency graph for every global function 

branches/newMo/src/continuator/moCheckpoint.h

@@ -39,6 +39,9 @@
 #include <utils/eoMonitor.h>
 #include <continuator/moStatBase.h>
 
+/**
+ * Continuator allowing to add others (continuators, stats, monitors or updaters)
+ */
 template <class NH>
 class moCheckpoint : public moContinuator<NH> {
 public :
@@ -46,22 +49,65 @@ public :
     typedef NH Neighborhood ;
     typedef typename Neighborhood::EOT EOT ;
 
+    /**
+     * Default constructor (moCheckpoint must have at least one continuator)
+     * @param _cont a continuator
+     */
     moCheckpoint(moContinuator<Neighborhood>& _cont) {
     	continuators.push_back(&_cont);
     }
 
-    void add(moContinuator<Neighborhood>& _cont) { continuators.push_back(&_cont); }
+    /**
-    void add(moStatBase<EOT>& _stat) { stats.push_back(&_stat); }
+     * add a continuator to the checkpoint
-    void add(eoMonitor& _mon) { monitors.push_back(&_mon); }
+     * @param _cont a continuator
-    void add(eoUpdater& _upd) { updaters.push_back(&_upd); }
+     */
+    void add(moContinuator<Neighborhood>& _cont) {
+    	continuators.push_back(&_cont);
+    }
 
+    /**
+     * add a statistic operator to the checkpoint
+     * @param _stat a statistic operator
+     */
+    void add(moStatBase<EOT>& _stat) {
+    	stats.push_back(&_stat);
+    }
+
+    /**
+     * add a monitor to the checkpoint
+     * @param _mon a monitor
+     */
+    void add(eoMonitor& _mon) {
+    	monitors.push_back(&_mon);
+    }
+
+    /**
+     * add a updater to the checkpoint
+     * @param _upd an updater
+     */
+    void add(eoUpdater& _upd) {
+    	updaters.push_back(&_upd);
+    }
+
+    /**
+     * init all continuators containing in the checkpoint regarding a solution
+     * @param _sol the corresponding solution
+     */
     virtual void init(EOT& _sol) {
     	for(unsigned i = 0; i < continuators.size(); ++i)
     		continuators[i]->init(_sol);
     }
 
+    /**
+     * @return the name of the class
+     */
     virtual std::string className(void) const { return "moCheckPoint"; }
 
+	/**
+	 * apply operator of checkpoint's containers
+	 * @param _sol reference of the solution
+	 * @return true if all continuator return true
+	 */
     bool operator()(EOT & _sol) {
     	unsigned i;
     	bool bContinue = true;
@@ -82,6 +128,10 @@ public :
     	  return bContinue;
     	}
 
+    /**
+     * last call of statistic operators, monitors and updaters
+     * @param _sol reference of the solution
+     */
     void lastCall(EOT& _sol){
 			unsigned int i;
 	      for (i = 0; i < stats.size(); ++i)
@@ -95,11 +145,15 @@ public :
 	    }
 
 private :
-
+    /** continuators vector */
     std::vector<moContinuator<Neighborhood>*> continuators;
+    /** statistic operators vector */
     std::vector<moStatBase<EOT>*> stats;
+    /** monitors vector */
     std::vector<eoMonitor*> monitors;
+    /** updaters vector */
     std::vector<eoUpdater*> updaters;
+
 };
 
 

branches/newMo/src/explorer/moFirstImprExplorer.h

@@ -56,7 +56,8 @@ public:
 	 * Constructor
 	 * @param _neighborhood the neighborhood
 	 * @param _eval the evaluation function
-	 * @param _comparator a neighbor comparator
+	 * @param _neighborComparator a neighbor comparator
+	 * @param _solNeighborComparator a solution vs neighbor comparator
 	 */
  moFirstImprExplorer(Neighborhood& _neighborhood, moEval<Neighbor>& _eval, moNeighborComparator<Neighbor>& _neighborComparator, moSolNeighborComparator<Neighbor>& _solNeighborComparator) : moNeighborhoodExplorer<Neighborhood>(_neighborhood, _eval), neighborComparator(_neighborComparator), solNeighborComparator(_solNeighborComparator) {
     	isAccept = false;

branches/newMo/src/explorer/moHCneutralExplorer.h

@@ -60,7 +60,9 @@ public:
 	 * Constructor
 	 * @param _neighborhood the neighborhood
 	 * @param _eval the evaluation function
-	 * @param _comparator a neighbor comparator
+	 * @param _neighborComparator a neighbor comparator
+	 * @param _solNeighborComparator a solution vs neighbor comparator
+	 * @param _nbStep maximum step to do
 	 */
  moHCneutralExplorer(Neighborhood& _neighborhood, 
 			   moEval<Neighbor>& _eval, 

branches/newMo/src/explorer/moMetropolisHastingExplorer.h

@@ -57,7 +57,9 @@ public:
 	 * Constructor
 	 * @param _neighborhood the neighborhood
 	 * @param _eval the evaluation function
-	 * @param _comparator a neighbor comparator
+	 * @param _neighborComparator a neighbor comparator
+	 * @param _solNeighborComparator a solution vs neighbor comparator
+	 * @param _nbStep maximum number of step to do
 	 */
  moMetropolisHastingExplorer(Neighborhood& _neighborhood, moEval<Neighbor>& _eval, moNeighborComparator<Neighbor>& _neighborComparator, moSolNeighborComparator<Neighbor>& _solNeighborComparator, unsigned int _nbStep) : moNeighborhoodExplorer<Neighborhood>(_neighborhood, _eval), neighborComparator(_neighborComparator), solNeighborComparator(_solNeighborComparator), nbStep(_nbStep) {
     	isAccept = false;
@@ -73,23 +75,26 @@ public:
 
 	/**
 	 * initialization of the number of step to be done
+	 * @param _solution the solution (unused here)
 	 */
-    virtual void initParam(EOT & solution){
+    virtual void initParam(EOT & _solution){
       step     = 0;
       isAccept = true;
     };
 
 	/**
 	 * increase the number of step
+	 * @param _solution the solution (unused here)
 	 */
-    virtual void updateParam(EOT & solution){
+    virtual void updateParam(EOT & _solution){
       step++;
     };
 
 	/**
 	 * terminate: NOTHING TO DO
+	 * @param _solution the solution (unused here)
 	 */
-    virtual void terminate(EOT & solution){};
+    virtual void terminate(EOT & _solution){};
 
     /**
      * Explore the neighborhood of a solution

branches/newMo/src/explorer/moNeighborhoodExplorer.h

@@ -56,7 +56,6 @@ public:
      * Constructor with a Neighborhood and evaluation function
      * @param _neighborhood the neighborhood
      * @param _eval the evaluation function
-     * @param _comparator a neighbor comparator
      */
     moNeighborhoodExplorer(Neighborhood& _neighborhood, moEval<Neighbor>& _eval):neighborhood(_neighborhood), eval(_eval), isMoved(false) {}
 

branches/newMo/src/explorer/moRandomNeutralWalkExplorer.h

@@ -57,7 +57,8 @@ public:
 	 * Constructor
 	 * @param _neighborhood the neighborhood
 	 * @param _eval the evaluation function
-	 * @param _comparator a neighbor comparator
+	 * @param _solNeighborComparator a solution vs neighbor comparator
+	 * @param _nbStep maximum number of step to do
 	 */
  moRandomNeutralWalkExplorer(Neighborhood& _neighborhood, moEval<Neighbor>& _eval, 
 			     moSolNeighborComparator<Neighbor>& _solNeighborComparator,

branches/newMo/src/explorer/moRandomWalkExplorer.h

@@ -56,7 +56,7 @@ public:
 	 * Constructor
 	 * @param _neighborhood the neighborhood
 	 * @param _eval the evaluation function
-	 * @param _comparator a neighbor comparator
+	 * @param _nbStep maximum number of step to do
 	 */
  moRandomWalkExplorer(Neighborhood& _neighborhood, moEval<Neighbor>& _eval, unsigned _nbStep) : moNeighborhoodExplorer<Neighborhood>(_neighborhood, _eval), nbStep(_nbStep) {
     	isAccept = false;

branches/newMo/src/explorer/moSimpleHCexplorer.h

@@ -56,7 +56,8 @@ public:
 	 * Constructor
 	 * @param _neighborhood the neighborhood
 	 * @param _eval the evaluation function
-	 * @param _comparator a neighbor comparator
+	 * @param _neighborComparator a neighbor comparator
+	 * @param _solNeighborComparator solution vs neighbor comparator
 	 */
  moSimpleHCexplorer(Neighborhood& _neighborhood, moEval<Neighbor>& _eval, moNeighborComparator<Neighbor>& _neighborComparator, moSolNeighborComparator<Neighbor>& _solNeighborComparator) : moNeighborhoodExplorer<Neighborhood>(_neighborhood, _eval), neighborComparator(_neighborComparator), solNeighborComparator(_solNeighborComparator) {
     	isAccept = false;

branches/newMo/src/explorer/moSimpleHCneutralExplorer.h

@@ -56,7 +56,8 @@ public:
 	 * Constructor
 	 * @param _neighborhood the neighborhood
 	 * @param _eval the evaluation function
-	 * @param _comparator a neighbor comparator
+	 * @param _neighborComparator a neighbor comparator
+	 * @param _solNeighborComparator solution vs neighbor comparator
 	 */
  moSimpleHCneutralExplorer(Neighborhood& _neighborhood, 
 			   moEval<Neighbor>& _eval, 

branches/newMo/src/explorer/moTSExplorer.h

@@ -40,6 +40,9 @@
 #include <comparator/moSolNeighborComparator.h>
 #include <memory/moAspiration.h>
 #include <memory/moTabuList.h>
+#include <memory/moIntensification.h>
+#include <memory/moDiversification.h>
+
 
 /**
  * Explorer for a Tabu Search
@@ -135,6 +138,7 @@ public:
      */
     virtual void operator()(EOT & _solution)
     {
+		bool found=false;
     	intensification(_solution);
     	diversification(_solution);
     	if(neighborhood.hasNeighbor(_solution))

branches/newMo/src/neighborhood/moIndexNeighbor.h

@@ -86,7 +86,7 @@ public:
 
     /**
      * Setter
-     * @param index of the IndexNeighbor
+     * @param _key index of the IndexNeighbor
      */
     void index(unsigned int _key){
     	key=_key;

branches/newMo/src/neighborhood/moIndexNeighborhood.h

@@ -51,7 +51,7 @@ public:
 
     /**
      * Constructor
-     * @param _neighborhood the size of the neighborhood
+     * @param _neighborhoodSize the size of the neighborhood
      */
     moIndexNeighborhood(unsigned int _neighborhoodSize):neighborhoodSize(_neighborhoodSize){}
 

branches/newMo/src/neighborhood/moOrderNeighborhood.h

@@ -57,7 +57,7 @@ public:
 
     /**
      * Constructor
-     * @param _neighborhood the size of the neighborhood
+     * @param _neighborhoodSize the size of the neighborhood
      */
     moOrderNeighborhood(unsigned int _neighborhoodSize): moIndexNeighborhood<Neighbor>(_neighborhoodSize), currentIndex(0){}
 

branches/newMo/src/neighborhood/moRndWithReplNeighborhood.h

@@ -57,7 +57,7 @@ public:
 
     /**
      * Constructor
-     * @param _neighborhood the size of the neighborhood
+     * @param _neighborhoodSize the size of the neighborhood
      */
     moRndWithReplNeighborhood(unsigned int _neighborhoodSize): moIndexNeighborhood<Neighbor>(_neighborhoodSize){}
 

branches/newMo/src/neighborhood/moRndWithoutReplNeighborhood.h

@@ -57,7 +57,7 @@ public:
 
     /**
      * Constructor
-     * @param _neighborhood the size of the neighborhood
+     * @param _neighborhoodSize the size of the neighborhood
      */
     moRndWithoutReplNeighborhood(unsigned int _neighborhoodSize): moIndexNeighborhood<Neighbor>(_neighborhoodSize), maxIndex(0){
     	for(unsigned int i=0; i < neighborhoodSize; i++)