Ok, updated the Makefile.am again to use the

make check

Command I picked up in the automake documentation (RTFM, you know)

Tagged a lot of header functions in the GnuPlot files with 'inline',
so they can be used from more than one sourcefile.

Ok, now the interesting news. Started a new library libga (not to be confused
with Matthew's GaLib). Here I suggest we put a fairly complete and configurable
genetic algorithm. Just to see how far we can stretch ourselves and also to have
a GA-componenent that can be used in other applications without having to rebuild
the entire thing. test/t-eoGA.cpp tests this library

eo/test/Makefile.am

@@ -13,16 +13,17 @@ LDADDS = $(top_builddir)/src/libeo.a $(top_builddir)/src/utils/libeoutils.a
 CXXFLAGS = -g
 ###############################################################################
 
-noinst_PROGRAMS = t-eofitness t-eobin t-eoStateAndParser t-eoCheckpointing t-eoExternalEO t-eoSymreg t-eo t-eoReplacement t-eoSelect t-eoGenOp
+check_PROGRAMS = t-eofitness t-eobin t-eoStateAndParser t-eoCheckpointing t-eoExternalEO t-eoSymreg t-eo t-eoReplacement t-eoSelect t-eoGenOp t-eoGA
+TESTS=run_tests
 # removing temporarily t-eoESFull
-# noinst_PROGRAMS = t-eofitness t-eobin t-eoStateAndParser t-eoCheckpointing t-eoExternalEO t-eoESFull t-eoSymreg t-eo t-eoReplacement t-eoSelect
+#noinst_PROGRAMS = t-eofitness t-eobin t-eoStateAndParser t-eoCheckpointing t-eoExternalEO t-eoESFull t-eoSymreg t-eo t-eoReplacement t-eoSelect t-eoGenOp t-eoGA
 
 ###############################################################################
 
-# t_eoESFull_SOURCES = t-eoESFull.cpp real_value.h
-# t_eoESFull_DEPENDENCIES = $(DEPS)
-# t_eoESFull_LDFLAGS = -lm
-# t_eoESFull_LDADD = $(LDADDS)
+#t_eoESFull_SOURCES = t-eoESFull.cpp real_value.h
+#t_eoESFull_DEPENDENCIES = $(DEPS)
+#t_eoESFull_LDFLAGS = -lm
+#t_eoESFull_LDADD = $(LDADDS)
 
 ###############################################################################
 
@@ -39,57 +40,64 @@ t_eobin_LDADD = $(LDADDS)
 ###############################################################################
 
 t_eoStateAndParser_SOURCES = t-eoStateAndParser.cpp
-t_eoStateAndParser_DEPENDENCIES = $(DEPS) 
-t_eoStateAndParser_LDFLAGS = -lm 
-t_eoStateAndParser_LDADD = $(LDADDS) 
+t_eoStateAndParser_DEPENDENCIES = $(DEPS)
+t_eoStateAndParser_LDFLAGS = -lm
+t_eoStateAndParser_LDADD = $(LDADDS)
 
 ###############################################################################
 
 t_eoCheckpointing_SOURCES = t-eoCheckpointing.cpp
-t_eoCheckpointing_DEPENDENCIES = $(DEPS) 
-t_eoCheckpointing_LDFLAGS = -lm 
-t_eoCheckpointing_LDADD = $(LDADDS) 
+t_eoCheckpointing_DEPENDENCIES = $(DEPS)
+t_eoCheckpointing_LDFLAGS = -lm
+t_eoCheckpointing_LDADD = $(LDADDS)
 
 ###############################################################################
 
 t_eoReplacement_SOURCES = t-eoReplacement.cpp
-t_eoReplacement_DEPENDENCIES = $(DEPS) 
-t_eoReplacement_LDFLAGS = -lm 
-t_eoReplacement_LDADD = $(LDADDS) 
+t_eoReplacement_DEPENDENCIES = $(DEPS)
+t_eoReplacement_LDFLAGS = -lm
+t_eoReplacement_LDADD = $(LDADDS)
 
 ###############################################################################
 
 t_eoSelect_SOURCES = t-eoSelect.cpp
-t_eoSelect_DEPENDENCIES = $(DEPS) 
-t_eoSelect_LDFLAGS = -lm 
-t_eoSelect_LDADD = $(LDADDS) 
+t_eoSelect_DEPENDENCIES = $(DEPS)
+t_eoSelect_LDFLAGS = -lm
+t_eoSelect_LDADD = $(LDADDS)
 
 ###############################################################################
 
 t_eoExternalEO_SOURCES = t-eoExternalEO.cpp
-t_eoExternalEO_DEPENDENCIES = $(DEPS) 
-t_eoExternalEO_LDFLAGS = -lm 
-t_eoExternalEO_LDADD = $(LDADDS) 
+t_eoExternalEO_DEPENDENCIES = $(DEPS)
+t_eoExternalEO_LDFLAGS = -lm
+t_eoExternalEO_LDADD = $(LDADDS)
 
 ###############################################################################
 
 t_eoSymreg_SOURCES = t-eoSymreg.cpp
-t_eoSymreg_DEPENDENCIES = $(DEPS) 
-t_eoSymreg_LDFLAGS = -lm 
-t_eoSymreg_LDADD = $(LDADDS) 
+t_eoSymreg_DEPENDENCIES = $(DEPS)
+t_eoSymreg_LDFLAGS = -lm
+t_eoSymreg_LDADD = $(LDADDS)
 
 ###############################################################################
 
 t_eo_SOURCES = t-eo.cpp
-t_eo_DEPENDENCIES = $(DEPS) 
-t_eo_LDFLAGS = -lm 
-t_eo_LDADD = $(LDADDS) 
+t_eo_DEPENDENCIES = $(DEPS)
+t_eo_LDFLAGS = -lm
+t_eo_LDADD = $(LDADDS)
 
 ###############################################################################
 
 t_eoGenOp_SOURCES = t-eoGenOp.cpp
-t_eoGenOp_DEPENDENCIES = $(DEPS) 
-t_eoGenOp_LDFLAGS = -lm 
-t_eoGenOp_LDADD = $(LDADDS) 
+t_eoGenOp_DEPENDENCIES = $(DEPS)
+t_eoGenOp_LDFLAGS = -lm
+t_eoGenOp_LDADD = $(LDADDS)
+
+###############################################################################
+
+t_eoGA_SOURCES = t-eoGA.cpp binary_value.h
+t_eoGA_DEPENDENCIES = $(DEPS) $(top_builddir)/src/ga/libga.a
+t_eoGA_LDFLAGS = -lm
+t_eoGA_LDADD = $(top_builddir)/src/ga/libga.a $(LDADDS)
 
 ###############################################################################

eo/test/run_tests

@@ -1,4 +1,4 @@
-#!/bin/sh 
+#!/bin/sh
 echo "Starting t-eo"
 ./t-eo > eo.log
 
@@ -33,6 +33,9 @@ echo "Testing t-eobin"
 echo "Testing t-eofitness"
 ./t-eofitness > fitness.log
 
+echo "Testing t-eoGA"
+./t-eoGA > t-eoGA.log
+
 echo "Finished"
 
 #TODO test if an error occured

eo/test/t-eoGA.cpp

@@ -0,0 +1,36 @@
+#include <iostream>
+
+#include <ga/ga.h>
+#include "binary_value.h"
+#include <apply.h>
+
+using namespace std;
+
+int main(int argc, char* argv[])
+{
+
+  try
+  {
+  typedef eoBit<double> EoType;
+
+  eoParser parser(argc, argv);
+
+  eoState state;         // keeps all things allocated, including eoEasyEA and eoPop!
+
+  eoEvalFuncPtr<EoType, float> eval( binary_value<EoType> );
+  eoGenContinue<EoType>  term(20);
+  eoCheckPoint<EoType>   checkpoint(term);
+
+  eoAlgo<EoType>& ga = make_ga(parser, eval, checkpoint, state);
+
+  eoPop<EoType>& pop   = init_ga(parser, state, double());
+
+  apply(eval, pop);
+
+  run_ga(ga, pop); // run the ga
+  }
+  catch(exception& e)
+  {
+    cout << e.what() << endl;
+  }
+}