paradiseo new mo added

git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1712 331e1502-861f-0410-8da2-ba01fb791d7f

trunk/paradiseo-mo/tutorial/oneMax/CMakeLists.txt

@@ -0,0 +1 @@
+ADD_SUBDIRECTORY(application)

trunk/paradiseo-mo/tutorial/oneMax/application/CMakeLists.txt

@@ -0,0 +1,25 @@
+INCLUDE_DIRECTORIES(${EO_SRC_DIR}/src
+					${MO_SRC_DIR}/src
+					${CMAKE_CURRENT_SOURCE_DIR}/../src)
+					
+LINK_DIRECTORIES(${EO_BIN_DIR}/lib)	
+
+ADD_EXECUTABLE(testSimpleHC testSimpleHC.cpp) 
+ADD_EXECUTABLE(testFirstImpr testFirstImpr.cpp) 
+ADD_EXECUTABLE(testRandomWalk testRandomWalk.cpp) 
+ADD_EXECUTABLE(testSimpleHCneutral testSimpleHCneutral.cpp) 
+ADD_EXECUTABLE(testHCneutral testHCneutral.cpp) 
+ADD_EXECUTABLE(testMetropolisHasting testMetropolisHasting.cpp) 
+#ADD_EXECUTABLE(testWithMove testWithMove.cpp) 
+ADD_EXECUTABLE(testSimpleTS testSimpleTS.cpp) 
+ADD_EXECUTABLE(testRandomNeutralWalk testRandomNeutralWalk.cpp) 
+
+TARGET_LINK_LIBRARIES(testSimpleHC eoutils ga eo) 
+TARGET_LINK_LIBRARIES(testFirstImpr eoutils ga eo) 
+TARGET_LINK_LIBRARIES(testRandomWalk eoutils ga eo) 
+TARGET_LINK_LIBRARIES(testSimpleHCneutral eoutils ga eo) 
+TARGET_LINK_LIBRARIES(testHCneutral eoutils ga eo) 
+TARGET_LINK_LIBRARIES(testMetropolisHasting eoutils ga eo) 
+#TARGET_LINK_LIBRARIES(testWithMove eoutils ga eo) 
+TARGET_LINK_LIBRARIES(testSimpleTS eoutils ga eo)
+TARGET_LINK_LIBRARIES(testRandomNeutralWalk eoutils ga eo) 

trunk/paradiseo-mo/tutorial/oneMax/application/testFirstImpr.cpp

@@ -0,0 +1,197 @@
+//-----------------------------------------------------------------------------
+/** testFirstImpr.cpp
+ *
+ * SV - 12/01/10 
+ *
+ */
+//-----------------------------------------------------------------------------
+
+// standard includes
+#define HAVE_SSTREAM
+
+#include <stdexcept>  // runtime_error 
+#include <iostream>   // cout
+#include <sstream>  // ostrstream, istrstream
+#include <fstream>
+#include <string.h>
+
+// the general include for eo
+#include <eo>
+#include <ga.h>
+
+using namespace std;
+
+//-----------------------------------------------------------------------------
+// fitness function
+#include <funcOneMax.h>
+#include <eoInt.h>
+#include <neighborhood/moRndWithoutReplNeighborhood.h>
+#include <oneMaxBitNeighbor.h>
+
+#include <eval/moFullEvalByModif.h>
+#include <eval/moFullEvalByCopy.h>
+#include <comparator/moNeighborComparator.h>
+#include <comparator/moSolNeighborComparator.h>
+#include <continuator/moTrueContinuator.h>
+#include <algo/moLocalSearch.h>
+#include <explorer/moFirstImprExplorer.h>
+
+// REPRESENTATION
+//-----------------------------------------------------------------------------
+typedef eoBit<unsigned> Indi;	
+typedef moBitNeighbor<unsigned int> Neighbor ; // incremental evaluation
+typedef moRndWithoutReplNeighborhood<Neighbor> Neighborhood ;
+
+void main_function(int argc, char **argv)
+{
+	/* =========================================================
+	*
+	* Parameters
+	*
+	* ========================================================= */
+
+	// First define a parser from the command-line arguments
+	eoParser parser(argc, argv);
+
+	// For each parameter, define Parameter, read it through the parser,
+	// and assign the value to the variable
+
+	eoValueParam<uint32_t> seedParam(time(0), "seed", "Random number seed", 'S');
+	parser.processParam( seedParam );
+	unsigned seed = seedParam.value();
+
+	// description of genotype
+	eoValueParam<unsigned int> vecSizeParam(8, "vecSize", "Genotype size", 'V');
+	parser.processParam( vecSizeParam, "Representation" );
+	unsigned vecSize = vecSizeParam.value();
+
+	// the name of the "status" file where all actual parameter values will be saved
+	string str_status = parser.ProgramName() + ".status"; // default value
+	eoValueParam<string> statusParam(str_status.c_str(), "status", "Status file");
+	parser.processParam( statusParam, "Persistence" );
+
+	// do the following AFTER ALL PARAMETERS HAVE BEEN PROCESSED
+	// i.e. in case you need parameters somewhere else, postpone these
+	if (parser.userNeedsHelp()){
+		parser.printHelp(cout);
+		exit(1);
+	}
+	if (statusParam.value() != ""){
+		ofstream os(statusParam.value().c_str());
+		os << parser;// and you can use that file as parameter file
+	}
+
+	/* =========================================================
+	 *
+	 * Random seed
+	 *
+	 * ========================================================= */
+
+	//reproducible random seed: if you don't change SEED above,
+	// you'll aways get the same result, NOT a random run
+	rng.reseed(seed);
+
+
+	/* =========================================================
+	 *
+	 * Eval fitness function
+	 *
+	 * ========================================================= */
+
+	FuncOneMax<Indi> eval(vecSize);
+
+
+	/* =========================================================
+	 *
+	 * Initilisation of the solution
+	 *
+	 * ========================================================= */
+
+	// a Indi random initializer
+	eoUniformGenerator<bool> uGen;
+	eoInitFixedLength<Indi> random(vecSize, uGen);
+
+
+	/* =========================================================
+	 *
+	 * evaluation of a neighbor solution
+	 *
+	 * ========================================================= */
+
+	moFullEvalByModif<Neighbor> fulleval(eval);
+
+	//An eval by copy can be used instead of the eval by modif
+	//moFullEvalByCopy<Neighbor> fulleval(eval);
+
+
+	/* =========================================================
+	 *
+	 * Comparator of neighbors
+	 *
+	 * ========================================================= */
+
+	moNeighborComparator<Neighbor> comparator;
+	moSolNeighborComparator<Neighbor> solComparator;
+
+
+	/* =========================================================
+	 *
+	 * the neighborhood of a solution
+	 *
+	 * ========================================================= */
+
+	Neighborhood neighborhood(vecSize);
+
+
+	/* =========================================================
+	 *
+	 * a neighborhood explorer solution
+	 *
+	 * ========================================================= */
+  
+	moFirstImprExplorer<Neighborhood> explorer(neighborhood, fulleval, comparator, solComparator);
+
+
+	/* =========================================================
+	 *
+	 * the local search algorithm
+	 *
+	 * ========================================================= */
+
+	moTrueContinuator<Neighborhood> continuator;//always continue
+
+	moLocalSearch< moFirstImprExplorer<Neighborhood> > localSearch(explorer, continuator, eval);
+
+	/* =========================================================
+	 *
+	 * execute the local search from random sollution
+	 *
+	 * ========================================================= */
+
+	Indi solution;
+
+	random(solution);
+
+	//Can be eval here, else it will be done at the beginning of the localSearch
+	//eval(solution);
+
+	std::cout << "initial: " << solution << std::endl ;
+
+	localSearch(solution);
+  
+	std::cout << "final:   " << solution << std::endl ;
+
+}
+
+// A main that catches the exceptions
+
+int main(int argc, char **argv)
+{
+	try{
+		main_function(argc, argv);
+	}
+	catch(exception& e){
+		cout << "Exception: " << e.what() << '\n';
+	}
+	return 1;
+}

trunk/paradiseo-mo/tutorial/oneMax/application/testHCneutral.cpp

@@ -0,0 +1,201 @@
+//-----------------------------------------------------------------------------
+/** testHCneutral.cpp
+ *
+ * SV - 24/01/10 
+ *
+ */
+//-----------------------------------------------------------------------------
+
+// standard includes
+#define HAVE_SSTREAM
+
+#include <stdexcept>  // runtime_error 
+#include <iostream>   // cout
+#include <sstream>  // ostrstream, istrstream
+#include <fstream>
+#include <string.h>
+
+// the general include for eo
+#include <eo>
+#include <ga.h>
+
+using namespace std;
+
+//-----------------------------------------------------------------------------
+// fitness function
+#include <funcOneMax.h>
+#include <eoInt.h>
+#include <neighborhood/moOrderNeighborhood.h>
+#include <oneMaxBitNeighbor.h>
+
+#include <eval/moFullEvalByModif.h>
+#include <eval/moFullEvalByCopy.h>
+#include <comparator/moNeighborComparator.h>
+#include <comparator/moSolNeighborComparator.h>
+#include <continuator/moTrueContinuator.h>
+#include <algo/moLocalSearch.h>
+#include <explorer/moHCneutralExplorer.h>
+
+// REPRESENTATION
+//-----------------------------------------------------------------------------
+typedef eoBit<unsigned> Indi;	
+typedef moBitNeighbor<unsigned int> Neighbor ; // incremental evaluation
+typedef moOrderNeighborhood<Neighbor> Neighborhood ;
+
+void main_function(int argc, char **argv)
+{
+	/* =========================================================
+	*
+	* Parameters
+	*
+	* ========================================================= */
+
+	// First define a parser from the command-line arguments
+	eoParser parser(argc, argv);
+
+	// For each parameter, define Parameter, read it through the parser,
+	// and assign the value to the variable
+
+	eoValueParam<uint32_t> seedParam(time(0), "seed", "Random number seed", 'S');
+	parser.processParam( seedParam );
+	unsigned seed = seedParam.value();
+
+	// description of genotype
+	eoValueParam<unsigned int> vecSizeParam(8, "vecSize", "Genotype size", 'V');
+	parser.processParam( vecSizeParam, "Representation" );
+	unsigned vecSize = vecSizeParam.value();
+
+	eoValueParam<unsigned int> stepParam(10, "nbStep", "Number of steps of the random walk", 'n');
+	parser.processParam( stepParam, "Representation" );
+	unsigned nbStep = stepParam.value();
+
+	// the name of the "status" file where all actual parameter values will be saved
+	string str_status = parser.ProgramName() + ".status"; // default value
+	eoValueParam<string> statusParam(str_status.c_str(), "status", "Status file");
+	parser.processParam( statusParam, "Persistence" );
+
+	// do the following AFTER ALL PARAMETERS HAVE BEEN PROCESSED
+	// i.e. in case you need parameters somewhere else, postpone these
+	if (parser.userNeedsHelp()){
+		parser.printHelp(cout);
+		exit(1);
+	}
+	if (statusParam.value() != ""){
+		ofstream os(statusParam.value().c_str());
+		os << parser;// and you can use that file as parameter file
+	}
+
+	/* =========================================================
+	 *
+	 * Random seed
+	 *
+	 * ========================================================= */
+
+	//reproducible random seed: if you don't change SEED above,
+	// you'll aways get the same result, NOT a random run
+	rng.reseed(seed);
+
+
+	/* =========================================================
+	 *
+	 * Eval fitness function
+	 *
+	 * ========================================================= */
+
+	FuncOneMax<Indi> eval(vecSize);
+
+
+	/* =========================================================
+	 *
+	 * Initilisation of the solution
+	 *
+	 * ========================================================= */
+
+	// a Indi random initializer
+	eoUniformGenerator<bool> uGen;
+	eoInitFixedLength<Indi> random(vecSize, uGen);
+
+
+	/* =========================================================
+	 *
+	 * evaluation of a neighbor solution
+	 *
+	 * ========================================================= */
+
+	moFullEvalByModif<Neighbor> fulleval(eval);
+
+	//An eval by copy can be used instead of the eval by modif
+	//moFullEvalByCopy<Neighbor> fulleval(eval);
+
+
+	/* =========================================================
+	 *
+	 * Comparator of neighbors
+	 *
+	 * ========================================================= */
+
+	moNeighborComparator<Neighbor> comparator;
+	moSolNeighborComparator<Neighbor> solComparator;
+
+
+	/* =========================================================
+	 *
+	 * the neighborhood of a solution
+	 *
+	 * ========================================================= */
+
+	Neighborhood neighborhood(vecSize);
+
+
+	/* =========================================================
+	 *
+	 * a neighborhood explorer solution
+	 *
+	 * ========================================================= */
+  
+	moHCneutralExplorer<Neighborhood> explorer(neighborhood, fulleval, comparator, solComparator, nbStep);
+
+
+	/* =========================================================
+	 *
+	 * the local search algorithm
+	 *
+	 * ========================================================= */
+
+	moTrueContinuator<Neighborhood> continuator;//always continue
+
+	moLocalSearch< moHCneutralExplorer<Neighborhood> > localSearch(explorer, continuator, eval);
+
+	/* =========================================================
+	 *
+	 * execute the local search from random sollution
+	 *
+	 * ========================================================= */
+
+	Indi solution;
+
+	random(solution);
+
+	//Can be eval here, else it will be done at the beginning of the localSearch
+	//eval(solution);
+
+	std::cout << "initial: " << solution << std::endl ;
+
+	localSearch(solution);
+  
+	std::cout << "final:   " << solution << std::endl ;
+
+}
+
+// A main that catches the exceptions
+
+int main(int argc, char **argv)
+{
+	try{
+		main_function(argc, argv);
+	}
+	catch(exception& e){
+		cout << "Exception: " << e.what() << '\n';
+	}
+	return 1;
+}

trunk/paradiseo-mo/tutorial/oneMax/application/testMetropolisHasting.cpp

@@ -0,0 +1,201 @@
+//-----------------------------------------------------------------------------
+/** testMetropolisHasting.cpp
+ *
+ * SV - 22/01/10 
+ *
+ */
+//-----------------------------------------------------------------------------
+
+// standard includes
+#define HAVE_SSTREAM
+
+#include <stdexcept>  // runtime_error 
+#include <iostream>   // cout
+#include <sstream>  // ostrstream, istrstream
+#include <fstream>
+#include <string.h>
+
+// the general include for eo
+#include <eo>
+#include <ga.h>
+
+using namespace std;
+
+//-----------------------------------------------------------------------------
+// fitness function
+#include <funcOneMax.h>
+#include <eoInt.h>
+#include <neighborhood/moRndWithReplNeighborhood.h>
+#include <oneMaxBitNeighbor.h>
+
+#include <eval/moFullEvalByModif.h>
+#include <eval/moFullEvalByCopy.h>
+#include <comparator/moNeighborComparator.h>
+#include <comparator/moSolNeighborComparator.h>
+#include <continuator/moTrueContinuator.h>
+#include <algo/moLocalSearch.h>
+#include <explorer/moMetropolisHastingExplorer.h>
+
+// REPRESENTATION
+//-----------------------------------------------------------------------------
+typedef eoBit<unsigned> Indi;	
+typedef moBitNeighbor<unsigned int> Neighbor ; // incremental evaluation
+typedef moRndWithReplNeighborhood<Neighbor> Neighborhood ;
+
+void main_function(int argc, char **argv)
+{
+	/* =========================================================
+	*
+	* Parameters
+	*
+	* ========================================================= */
+
+	// First define a parser from the command-line arguments
+	eoParser parser(argc, argv);
+
+	// For each parameter, define Parameter, read it through the parser,
+	// and assign the value to the variable
+
+	eoValueParam<uint32_t> seedParam(time(0), "seed", "Random number seed", 'S');
+	parser.processParam( seedParam );
+	unsigned seed = seedParam.value();
+
+	// description of genotype
+	eoValueParam<unsigned int> vecSizeParam(8, "vecSize", "Genotype size", 'V');
+	parser.processParam( vecSizeParam, "Representation" );
+	unsigned vecSize = vecSizeParam.value();
+
+	eoValueParam<unsigned int> stepParam(10, "nbStep", "Number of steps of the random walk", 'n');
+	parser.processParam( stepParam, "Representation" );
+	unsigned nbStep = stepParam.value();
+
+	// the name of the "status" file where all actual parameter values will be saved
+	string str_status = parser.ProgramName() + ".status"; // default value
+	eoValueParam<string> statusParam(str_status.c_str(), "status", "Status file");
+	parser.processParam( statusParam, "Persistence" );
+
+	// do the following AFTER ALL PARAMETERS HAVE BEEN PROCESSED
+	// i.e. in case you need parameters somewhere else, postpone these
+	if (parser.userNeedsHelp()){
+		parser.printHelp(cout);
+		exit(1);
+	}
+	if (statusParam.value() != ""){
+		ofstream os(statusParam.value().c_str());
+		os << parser;// and you can use that file as parameter file
+	}
+
+	/* =========================================================
+	 *
+	 * Random seed
+	 *
+	 * ========================================================= */
+
+	//reproducible random seed: if you don't change SEED above,
+	// you'll aways get the same result, NOT a random run
+	rng.reseed(seed);
+
+
+	/* =========================================================
+	 *
+	 * Eval fitness function
+	 *
+	 * ========================================================= */
+
+	FuncOneMax<Indi> eval(vecSize);
+
+
+	/* =========================================================
+	 *
+	 * Initilisation of the solution
+	 *
+	 * ========================================================= */
+
+	// a Indi random initializer
+	eoUniformGenerator<bool> uGen;
+	eoInitFixedLength<Indi> random(vecSize, uGen);
+
+
+	/* =========================================================
+	 *
+	 * evaluation of a neighbor solution
+	 *
+	 * ========================================================= */
+
+	moFullEvalByModif<Neighbor> fulleval(eval);
+
+	//An eval by copy can be used instead of the eval by modif
+	//moFullEvalByCopy<Neighbor> fulleval(eval);
+
+
+	/* =========================================================
+	 *
+	 * Comparator of neighbors
+	 *
+	 * ========================================================= */
+
+	moNeighborComparator<Neighbor> comparator;
+	moSolNeighborComparator<Neighbor> solComparator;
+
+
+	/* =========================================================
+	 *
+	 * the neighborhood of a solution
+	 *
+	 * ========================================================= */
+
+	Neighborhood neighborhood(vecSize);
+
+
+	/* =========================================================
+	 *
+	 * a neighborhood explorer solution
+	 *
+	 * ========================================================= */
+  
+	moMetropolisHastingExplorer<Neighborhood> explorer(neighborhood, fulleval, comparator, solComparator, nbStep);
+
+
+	/* =========================================================
+	 *
+	 * the local search algorithm
+	 *
+	 * ========================================================= */
+
+	moTrueContinuator<Neighborhood> continuator;//always continue
+
+	moLocalSearch< moMetropolisHastingExplorer<Neighborhood> > localSearch(explorer, continuator, eval);
+
+	/* =========================================================
+	 *
+	 * execute the local search from random sollution
+	 *
+	 * ========================================================= */
+
+	Indi solution;
+
+	random(solution);
+
+	//Can be eval here, else it will be done at the beginning of the localSearch
+	//eval(solution);
+
+	std::cout << "initial: " << solution << std::endl ;
+
+	localSearch(solution);
+  
+	std::cout << "final:   " << solution << std::endl ;
+
+}
+
+// A main that catches the exceptions
+
+int main(int argc, char **argv)
+{
+	try{
+		main_function(argc, argv);
+	}
+	catch(exception& e){
+		cout << "Exception: " << e.what() << '\n';
+	}
+	return 1;
+}

trunk/paradiseo-mo/tutorial/oneMax/application/testRandomNeutralWalk.cpp

@@ -0,0 +1,278 @@
+//-----------------------------------------------------------------------------
+/** testRandomNeutralWalk.cpp
+ *
+ * SV - 22/02/10 
+ *
+ */
+//-----------------------------------------------------------------------------
+
+// standard includes
+#define HAVE_SSTREAM
+
+#include <stdexcept>  // runtime_error 
+#include <iostream>   // cout
+#include <sstream>  // ostrstream, istrstream
+#include <fstream>
+#include <string.h>
+
+// the general include for eo
+#include <eo>
+#include <ga.h>
+
+using namespace std;
+
+//-----------------------------------------------------------------------------
+// fitness function
+#include <funcRoyalRoad.h>
+#include <eoInt.h>
+#include <neighborhood/moRndWithoutReplNeighborhood.h>
+#include <neighborhood/moBitNeighbor.h>
+
+#include <eval/moFullEvalByModif.h>
+#include <eval/moFullEvalByCopy.h>
+#include <comparator/moNeighborComparator.h>
+#include <comparator/moSolNeighborComparator.h>
+#include <continuator/moTrueContinuator.h>
+#include <algo/moLocalSearch.h>
+#include <explorer/moRandomNeutralWalkExplorer.h>
+
+#include <continuator/moCheckpoint.h>
+#include <continuator/moFitnessStat.h>
+#include <utils/eoDistance.h>
+#include <continuator/moDistanceStat.h>
+#include <neighborhood/moOrderNeighborhood.h>
+#include <continuator/moNeighborhoodStat.h>
+#include <continuator/moMinNeighborStat.h>
+#include <continuator/moMaxNeighborStat.h>
+#include <continuator/moSecondMomentNeighborStat.h>
+#include <continuator/moNbInfNeighborStat.h>
+#include <continuator/moNbSupNeighborStat.h>
+#include <continuator/moNeutralDegreeNeighborStat.h>
+#include <continuator/moSizeNeighborStat.h>
+
+// REPRESENTATION
+//-----------------------------------------------------------------------------
+typedef eoBit<unsigned> Indi;	
+typedef moBitNeighbor<unsigned int> Neighbor ; // incremental evaluation
+typedef moRndWithoutReplNeighborhood<Neighbor> Neighborhood ;
+
+void main_function(int argc, char **argv)
+{
+	/* =========================================================
+	*
+	* Parameters
+	*
+	* ========================================================= */
+
+	// First define a parser from the command-line arguments
+	eoParser parser(argc, argv);
+
+	// For each parameter, define Parameter, read it through the parser,
+	// and assign the value to the variable
+
+	eoValueParam<uint32_t> seedParam(time(0), "seed", "Random number seed", 'S');
+	parser.processParam( seedParam );
+	unsigned seed = seedParam.value();
+
+	// description of genotype
+	eoValueParam<unsigned int> vecSizeParam(8, "vecSize", "Genotype size", 'V');
+	parser.processParam( vecSizeParam, "Representation" );
+	unsigned vecSize = vecSizeParam.value();
+
+	eoValueParam<unsigned int> blockSizeParam(2, "blockSize", "Size of block in the royal road", 'k');
+	parser.processParam( blockSizeParam, "Representation" );
+	unsigned blockSize = blockSizeParam.value();
+
+	eoValueParam<unsigned int> stepParam(10, "nbStep", "Number of steps of the random walk", 'n');
+	parser.processParam( stepParam, "Representation" );
+	unsigned nbStep = stepParam.value();
+
+	// the name of the "status" file where all actual parameter values will be saved
+	string str_status = parser.ProgramName() + ".status"; // default value
+	eoValueParam<string> statusParam(str_status.c_str(), "status", "Status file");
+	parser.processParam( statusParam, "Persistence" );
+
+	// do the following AFTER ALL PARAMETERS HAVE BEEN PROCESSED
+	// i.e. in case you need parameters somewhere else, postpone these
+	if (parser.userNeedsHelp()){
+		parser.printHelp(cout);
+		exit(1);
+	}
+	if (statusParam.value() != ""){
+		ofstream os(statusParam.value().c_str());
+		os << parser;// and you can use that file as parameter file
+	}
+
+	/* =========================================================
+	 *
+	 * Random seed
+	 *
+	 * ========================================================= */
+
+	//reproducible random seed: if you don't change SEED above,
+	// you'll aways get the same result, NOT a random run
+	rng.reseed(seed);
+
+
+	/* =========================================================
+	 *
+	 * Eval fitness function
+	 *
+	 * ========================================================= */
+
+	FuncRoyalRoad<Indi> eval(vecSize / blockSize, blockSize);
+
+
+	/* =========================================================
+	 *
+	 * Initilisazor of the solution
+	 *
+	 * ========================================================= */
+
+	// a Indi random initializer
+	eoUniformGenerator<bool> uGen;
+	eoInitFixedLength<Indi> random(vecSize, uGen);
+
+
+	/* =========================================================
+	 *
+	 * Evaluation of a neighbor solution
+	 *
+	 * ========================================================= */
+
+	moFullEvalByModif<Neighbor> nhEval(eval);
+
+	//An eval by copy can be used instead of the eval by modif
+	//moFullEvalByCopy<Neighbor> nhEval(eval);
+
+
+	/* =========================================================
+	 *
+	 * Comparator of neighbors
+	 *
+	 * ========================================================= */
+
+	moNeighborComparator<Neighbor> comparator;
+	moSolNeighborComparator<Neighbor> solComparator;
+
+
+	/* =========================================================
+	 *
+	 * the neighborhood of a solution
+	 *
+	 * ========================================================= */
+
+	Neighborhood neighborhood(vecSize);
+
+
+	/* =========================================================
+	 *
+	 * a neighborhood explorer solution
+	 *
+	 * ========================================================= */
+  
+	moRandomNeutralWalkExplorer<Neighborhood> explorer(neighborhood, nhEval, solComparator, nbStep);
+
+
+	/* =========================================================
+	 *
+	 * initial random solution
+	 *
+	 * ========================================================= */
+
+	Indi solution;
+
+	random(solution);
+
+	//Can be eval here, else it will be done at the beginning of the localSearch
+	eval(solution);
+
+	/* =========================================================
+	 *
+	 * the continuator and the checkpoint
+	 *
+	 * ========================================================= */
+
+	moTrueContinuator<Neighborhood> continuator;//always continue
+
+	moCheckpoint<Neighborhood> checkpoint(continuator);
+
+	moFitnessStat<Indi, unsigned> fStat;
+
+	eoHammingDistance<Indi> distance;
+	moDistanceStat<Indi, unsigned> distStat(distance, solution);  // distance from the intial solution
+	
+	moOrderNeighborhood<Neighbor> nh(vecSize);
+	moNeighborhoodStat< moOrderNeighborhood<Neighbor> > neighborhoodStat(nh, nhEval, comparator, solComparator);
+	moMinNeighborStat< moOrderNeighborhood<Neighbor> > minStat(neighborhoodStat);
+	moSecondMomentNeighborStat< moOrderNeighborhood<Neighbor> > secondMomentStat(neighborhoodStat);
+	moMaxNeighborStat< moOrderNeighborhood<Neighbor> > maxStat(neighborhoodStat);
+
+	moNbSupNeighborStat< moOrderNeighborhood<Neighbor> > nbSupStat(neighborhoodStat);
+	moNbInfNeighborStat< moOrderNeighborhood<Neighbor> > nbInfStat(neighborhoodStat);
+	moNeutralDegreeNeighborStat< moOrderNeighborhood<Neighbor> > ndStat(neighborhoodStat);
+	moSizeNeighborStat< moOrderNeighborhood<Neighbor> > sizeStat(neighborhoodStat);
+
+	eoValueParam<unsigned int> genCounter(-1,"Gen");
+	eoIncrementor<unsigned int> increm(genCounter.value());
+
+	checkpoint.add(fStat);
+	checkpoint.add(distStat);
+	checkpoint.add(neighborhoodStat);
+	checkpoint.add(minStat);
+	checkpoint.add(secondMomentStat);
+	checkpoint.add(maxStat);
+	checkpoint.add(nbInfStat);
+	checkpoint.add(ndStat);
+	checkpoint.add(nbSupStat);
+	checkpoint.add(sizeStat);
+	checkpoint.add(increm);
+
+	eoFileMonitor outputfile("out.dat", " ");
+	checkpoint.add(outputfile);
+
+	outputfile.add(genCounter);
+	outputfile.add(fStat);
+	outputfile.add(distStat);
+	outputfile.add(minStat);
+	outputfile.add(secondMomentStat);
+	outputfile.add(maxStat);
+	outputfile.add(nbInfStat);
+	outputfile.add(ndStat);
+	outputfile.add(nbSupStat);
+	outputfile.add(sizeStat);
+
+	/* =========================================================
+	 *
+	 * the local search algorithm
+	 *
+	 * ========================================================= */
+
+	moLocalSearch< moRandomNeutralWalkExplorer<Neighborhood> > localSearch(explorer, checkpoint, eval);
+
+	/* =========================================================
+	 *
+	 * execute the local search from random sollution
+	 *
+	 * ========================================================= */
+
+	std::cout << "initial: " << solution << std::endl ;
+
+	localSearch(solution);
+  
+	std::cout << "final:   " << solution << std::endl ;
+
+}
+
+// A main that catches the exceptions
+
+int main(int argc, char **argv)
+{
+	try{
+		main_function(argc, argv);
+	}
+	catch(exception& e){
+		cout << "Exception: " << e.what() << '\n';
+	}
+	return 1;
+}

trunk/paradiseo-mo/tutorial/oneMax/application/testRandomWalk.cpp

@@ -0,0 +1,243 @@
+//-----------------------------------------------------------------------------
+/** testRandomWalk.cpp
+ *
+ * SV - 22/01/10 
+ *
+ */
+//-----------------------------------------------------------------------------
+
+// standard includes
+#define HAVE_SSTREAM
+
+#include <stdexcept>  // runtime_error 
+#include <iostream>   // cout
+#include <sstream>  // ostrstream, istrstream
+#include <fstream>
+#include <string.h>
+
+// the general include for eo
+#include <eo>
+#include <ga.h>
+
+using namespace std;
+
+//-----------------------------------------------------------------------------
+// fitness function
+#include <funcOneMax.h>
+#include <eoInt.h>
+#include <neighborhood/moRndWithReplNeighborhood.h>
+#include <oneMaxBitNeighbor.h>
+
+#include <eval/moFullEvalByModif.h>
+#include <eval/moFullEvalByCopy.h>
+#include <continuator/moTrueContinuator.h>
+#include <algo/moLocalSearch.h>
+#include <explorer/moRandomWalkExplorer.h>
+#include <continuator/moCheckpoint.h>
+#include <continuator/moFitnessStat.h>
+#include <continuator/moSolutionStat.h>
+#include <utils/eoDistance.h>
+#include <continuator/moDistanceStat.h>
+
+#include <utils/eoFileMonitor.h>
+#include <utils/eoUpdater.h>
+
+// REPRESENTATION
+//-----------------------------------------------------------------------------
+typedef eoBit<unsigned> Indi;	
+typedef moBitNeighbor<unsigned int> Neighbor ; // incremental evaluation
+typedef moRndWithReplNeighborhood<Neighbor> Neighborhood ;
+
+void main_function(int argc, char **argv)
+{
+	/* =========================================================
+	*
+	* Parameters
+	*
+	* ========================================================= */
+
+	// First define a parser from the command-line arguments
+	eoParser parser(argc, argv);
+
+	// For each parameter, define Parameter, read it through the parser,
+	// and assign the value to the variable
+
+	eoValueParam<uint32_t> seedParam(time(0), "seed", "Random number seed", 'S');
+	parser.processParam( seedParam );
+	unsigned seed = seedParam.value();
+
+	// description of genotype
+	eoValueParam<unsigned int> vecSizeParam(8, "vecSize", "Genotype size", 'V');
+	parser.processParam( vecSizeParam, "Representation" );
+	unsigned vecSize = vecSizeParam.value();
+
+	eoValueParam<unsigned int> stepParam(10, "nbStep", "Number of steps of the random walk", 'n');
+	parser.processParam( stepParam, "Representation" );
+	unsigned nbStep = stepParam.value();
+
+	// the name of the "status" file where all actual parameter values will be saved
+	string str_status = parser.ProgramName() + ".status"; // default value
+	eoValueParam<string> statusParam(str_status.c_str(), "status", "Status file");
+	parser.processParam( statusParam, "Persistence" );
+
+	// do the following AFTER ALL PARAMETERS HAVE BEEN PROCESSED
+	// i.e. in case you need parameters somewhere else, postpone these
+	if (parser.userNeedsHelp()){
+		parser.printHelp(cout);
+		exit(1);
+	}
+	if (statusParam.value() != ""){
+		ofstream os(statusParam.value().c_str());
+		os << parser;// and you can use that file as parameter file
+	}
+
+	/* =========================================================
+	 *
+	 * Random seed
+	 *
+	 * ========================================================= */
+
+	//reproducible random seed: if you don't change SEED above,
+	// you'll aways get the same result, NOT a random run
+	rng.reseed(seed);
+
+
+	/* =========================================================
+	 *
+	 * Eval fitness function
+	 *
+	 * ========================================================= */
+
+	FuncOneMax<Indi> eval(vecSize);
+
+
+	/* =========================================================
+	 *
+	 * Initilisation of the solution
+	 *
+	 * ========================================================= */
+
+	// a Indi random initializer
+	eoUniformGenerator<bool> uGen;
+	eoInitFixedLength<Indi> random(vecSize, uGen);
+
+
+	/* =========================================================
+	 *
+	 * evaluation of a neighbor solution
+	 *
+	 * ========================================================= */
+
+	moFullEvalByModif<Neighbor> nhEval(eval);
+
+	//An eval by copy can be used instead of the eval by modif
+	//moFullEvalByCopy<Neighbor> nhEval(eval);
+
+
+	/* =========================================================
+	 *
+	 * the neighborhood of a solution
+	 *
+	 * ========================================================= */
+
+	Neighborhood neighborhood(vecSize);
+
+
+	/* =========================================================
+	 *
+	 * a neighborhood explorer solution
+	 *
+	 * ========================================================= */
+  
+	moRandomWalkExplorer<Neighborhood> explorer(neighborhood, nhEval, nbStep);
+
+
+	/* =========================================================
+	 *
+	 * the continuator and the checkpoint
+	 *
+	 * ========================================================= */
+
+	moTrueContinuator<Neighborhood> continuator;//always continue
+
+	moCheckpoint<Neighborhood> checkpoint(continuator);
+
+	moFitnessStat<Indi, unsigned> fStat;
+	eoHammingDistance<Indi> distance;
+	Indi bestSolution(vecSize, true);
+	moDistanceStat<Indi, unsigned> distStat(distance, bestSolution);
+	//	moSolutionStat<Indi> solStat;
+	
+	checkpoint.add(fStat);
+	checkpoint.add(distStat);
+	//	checkpoint.add(solStat);
+
+	eoValueParam<unsigned int> genCounter(-1,"Gen");
+	eoIncrementor<unsigned int> increm(genCounter.value());
+	checkpoint.add(increm);
+
+	eoFileMonitor outputfile("out.dat", " ");
+	checkpoint.add(outputfile);
+
+	outputfile.add(genCounter);
+	outputfile.add(fStat);
+	outputfile.add(distStat);
+	//	outputfile.add(solStat);
+
+	Indi solution; // current solution of the search process
+
+	/*
+	// to save the solution at each iteration
+	eoState outState;
+
+	// Register the algorithm into the state (so it has something to save!!
+
+	outState.registerObject(solution);
+
+	// and feed the state to state savers
+	// save state every 10th iteration
+	eoCountedStateSaver stateSaver(10, outState, "iteration"); 
+	
+	  // Don't forget to add the two savers to the checkpoint
+	checkpoint.add(stateSaver);
+	*/
+
+	/* =========================================================
+	 *
+	 * the local search algorithm
+	 *
+	 * ========================================================= */
+
+	moLocalSearch< moRandomWalkExplorer<Neighborhood> > localSearch(explorer, checkpoint, eval);
+
+	/* =========================================================
+	 *
+	 * execute the local search from random sollution
+	 *
+	 * ========================================================= */
+
+	random(solution);
+
+	//Can be eval here, else it will be done at the beginning of the localSearch
+	//eval(solution);
+
+	std::cout << "initial: " << solution << std::endl ;
+
+	localSearch(solution);
+  
+	std::cout << "final:   " << solution << std::endl ;
+
+}
+
+// A main that catches the exceptions
+
+int main(int argc, char **argv)
+{
+	try{
+		main_function(argc, argv);
+	}
+	catch(exception& e){
+		cout << "Exception: " << e.what() << '\n';
+	}
+	return 1;
+}

trunk/paradiseo-mo/tutorial/oneMax/application/testSimpleHC.cpp

@@ -0,0 +1,197 @@
+//-----------------------------------------------------------------------------
+/** testSimpleHC.cpp
+ *
+ * SV - 12/01/10 
+ *
+ */
+//-----------------------------------------------------------------------------
+
+// standard includes
+#define HAVE_SSTREAM
+
+#include <stdexcept>  // runtime_error 
+#include <iostream>   // cout
+#include <sstream>  // ostrstream, istrstream
+#include <fstream>
+#include <string.h>
+
+// the general include for eo
+#include <eo>
+#include <ga.h>
+
+using namespace std;
+
+//-----------------------------------------------------------------------------
+// fitness function
+#include <funcOneMax.h>
+#include <eoInt.h>
+#include <neighborhood/moOrderNeighborhood.h>
+#include <oneMaxBitNeighbor.h>
+
+#include <eval/moFullEvalByModif.h>
+#include <eval/moFullEvalByCopy.h>
+#include <comparator/moNeighborComparator.h>
+#include <comparator/moSolNeighborComparator.h>
+#include <continuator/moTrueContinuator.h>
+#include <algo/moLocalSearch.h>
+#include <explorer/moSimpleHCexplorer.h>
+
+// REPRESENTATION
+//-----------------------------------------------------------------------------
+typedef eoBit<unsigned> Indi;	
+typedef moBitNeighbor<unsigned int> Neighbor ; // incremental evaluation
+typedef moOrderNeighborhood<Neighbor> Neighborhood ;
+
+void main_function(int argc, char **argv)
+{
+	/* =========================================================
+	*
+	* Parameters
+	*
+	* ========================================================= */
+
+	// First define a parser from the command-line arguments
+	eoParser parser(argc, argv);
+
+	// For each parameter, define Parameter, read it through the parser,
+	// and assign the value to the variable
+
+	eoValueParam<uint32_t> seedParam(time(0), "seed", "Random number seed", 'S');
+	parser.processParam( seedParam );
+	unsigned seed = seedParam.value();
+
+	// description of genotype
+	eoValueParam<unsigned int> vecSizeParam(8, "vecSize", "Genotype size", 'V');
+	parser.processParam( vecSizeParam, "Representation" );
+	unsigned vecSize = vecSizeParam.value();
+
+	// the name of the "status" file where all actual parameter values will be saved
+	string str_status = parser.ProgramName() + ".status"; // default value
+	eoValueParam<string> statusParam(str_status.c_str(), "status", "Status file");
+	parser.processParam( statusParam, "Persistence" );
+
+	// do the following AFTER ALL PARAMETERS HAVE BEEN PROCESSED
+	// i.e. in case you need parameters somewhere else, postpone these
+	if (parser.userNeedsHelp()){
+		parser.printHelp(cout);
+		exit(1);
+	}
+	if (statusParam.value() != ""){
+		ofstream os(statusParam.value().c_str());
+		os << parser;// and you can use that file as parameter file
+	}
+
+	/* =========================================================
+	 *
+	 * Random seed
+	 *
+	 * ========================================================= */
+
+	//reproducible random seed: if you don't change SEED above,
+	// you'll aways get the same result, NOT a random run
+	rng.reseed(seed);
+
+
+	/* =========================================================
+	 *
+	 * Eval fitness function
+	 *
+	 * ========================================================= */
+
+	FuncOneMax<Indi> eval(vecSize);
+
+
+	/* =========================================================
+	 *
+	 * Initilisation of the solution
+	 *
+	 * ========================================================= */
+
+	// a Indi random initializer
+	eoUniformGenerator<bool> uGen;
+	eoInitFixedLength<Indi> random(vecSize, uGen);
+
+
+	/* =========================================================
+	 *
+	 * evaluation of a neighbor solution
+	 *
+	 * ========================================================= */
+
+	moFullEvalByModif<Neighbor> fulleval(eval);
+
+	//An eval by copy can be used instead of the eval by modif
+	//moFullEvalByCopy<Neighbor> fulleval(eval);
+
+
+	/* =========================================================
+	 *
+	 * Comparator of neighbors
+	 *
+	 * ========================================================= */
+
+	moNeighborComparator<Neighbor> comparator;
+	moSolNeighborComparator<Neighbor> solComparator;
+
+
+	/* =========================================================
+	 *
+	 * the neighborhood of a solution
+	 *
+	 * ========================================================= */
+
+	Neighborhood neighborhood(vecSize);
+
+
+	/* =========================================================
+	 *
+	 * a neighborhood explorer solution
+	 *
+	 * ========================================================= */
+  
+	moSimpleHCexplorer<Neighborhood> explorer(neighborhood, fulleval, comparator, solComparator);
+
+
+	/* =========================================================
+	 *
+	 * the local search algorithm
+	 *
+	 * ========================================================= */
+
+	moTrueContinuator<Neighborhood> continuator;//always continue
+
+	moLocalSearch< moSimpleHCexplorer<Neighborhood> > localSearch(explorer, continuator, eval);
+
+	/* =========================================================
+	 *
+	 * execute the local search from random sollution
+	 *
+	 * ========================================================= */
+
+	Indi solution;
+
+	random(solution);
+
+	//Can be eval here, else it will be done at the beginning of the localSearch
+	//eval(solution);
+
+	std::cout << "initial: " << solution << std::endl ;
+
+	localSearch(solution);
+  
+	std::cout << "final:   " << solution << std::endl ;
+
+}
+
+// A main that catches the exceptions
+
+int main(int argc, char **argv)
+{
+	try{
+		main_function(argc, argv);
+	}
+	catch(exception& e){
+		cout << "Exception: " << e.what() << '\n';
+	}
+	return 1;
+}

trunk/paradiseo-mo/tutorial/oneMax/application/testSimpleHCneutral.cpp

@@ -0,0 +1,197 @@
+//-----------------------------------------------------------------------------
+/** testSimpleHCneutral.cpp
+ *
+ * SV - 24/01/10 
+ *
+ */
+//-----------------------------------------------------------------------------
+
+// standard includes
+#define HAVE_SSTREAM
+
+#include <stdexcept>  // runtime_error 
+#include <iostream>   // cout
+#include <sstream>  // ostrstream, istrstream
+#include <fstream>
+#include <string.h>
+
+// the general include for eo
+#include <eo>
+#include <ga.h>
+
+using namespace std;
+
+//-----------------------------------------------------------------------------
+// fitness function
+#include <funcOneMax.h>
+#include <eoInt.h>
+#include <neighborhood/moOrderNeighborhood.h>
+#include <oneMaxBitNeighbor.h>
+
+#include <eval/moFullEvalByModif.h>
+#include <eval/moFullEvalByCopy.h>
+#include <comparator/moNeighborComparator.h>
+#include <comparator/moSolNeighborComparator.h>
+#include <continuator/moTrueContinuator.h>
+#include <algo/moLocalSearch.h>
+#include <explorer/moSimpleHCneutralExplorer.h>
+
+// REPRESENTATION
+//-----------------------------------------------------------------------------
+typedef eoBit<unsigned> Indi;	
+typedef moBitNeighbor<unsigned int> Neighbor ; // incremental evaluation
+typedef moOrderNeighborhood<Neighbor> Neighborhood ;
+
+void main_function(int argc, char **argv)
+{
+	/* =========================================================
+	*
+	* Parameters
+	*
+	* ========================================================= */
+
+	// First define a parser from the command-line arguments
+	eoParser parser(argc, argv);
+
+	// For each parameter, define Parameter, read it through the parser,
+	// and assign the value to the variable
+
+	eoValueParam<uint32_t> seedParam(time(0), "seed", "Random number seed", 'S');
+	parser.processParam( seedParam );
+	unsigned seed = seedParam.value();
+
+	// description of genotype
+	eoValueParam<unsigned int> vecSizeParam(8, "vecSize", "Genotype size", 'V');
+	parser.processParam( vecSizeParam, "Representation" );
+	unsigned vecSize = vecSizeParam.value();
+
+	// the name of the "status" file where all actual parameter values will be saved
+	string str_status = parser.ProgramName() + ".status"; // default value
+	eoValueParam<string> statusParam(str_status.c_str(), "status", "Status file");
+	parser.processParam( statusParam, "Persistence" );
+
+	// do the following AFTER ALL PARAMETERS HAVE BEEN PROCESSED
+	// i.e. in case you need parameters somewhere else, postpone these
+	if (parser.userNeedsHelp()){
+		parser.printHelp(cout);
+		exit(1);
+	}
+	if (statusParam.value() != ""){
+		ofstream os(statusParam.value().c_str());
+		os << parser;// and you can use that file as parameter file
+	}
+
+	/* =========================================================
+	 *
+	 * Random seed
+	 *
+	 * ========================================================= */
+
+	//reproducible random seed: if you don't change SEED above,
+	// you'll aways get the same result, NOT a random run
+	rng.reseed(seed);
+
+
+	/* =========================================================
+	 *
+	 * Eval fitness function
+	 *
+	 * ========================================================= */
+
+	FuncOneMax<Indi> eval(vecSize);
+
+
+	/* =========================================================
+	 *
+	 * Initilisation of the solution
+	 *
+	 * ========================================================= */
+
+	// a Indi random initializer
+	eoUniformGenerator<bool> uGen;
+	eoInitFixedLength<Indi> random(vecSize, uGen);
+
+
+	/* =========================================================
+	 *
+	 * evaluation of a neighbor solution
+	 *
+	 * ========================================================= */
+
+	moFullEvalByModif<Neighbor> fulleval(eval);
+
+	//An eval by copy can be used instead of the eval by modif
+	//moFullEvalByCopy<Neighbor> fulleval(eval);
+
+
+	/* =========================================================
+	 *
+	 * Comparator of neighbors
+	 *
+	 * ========================================================= */
+
+	moNeighborComparator<Neighbor> comparator;
+	moSolNeighborComparator<Neighbor> solComparator;
+
+
+	/* =========================================================
+	 *
+	 * the neighborhood of a solution
+	 *
+	 * ========================================================= */
+
+	Neighborhood neighborhood(vecSize);
+
+
+	/* =========================================================
+	 *
+	 * a neighborhood explorer solution
+	 *
+	 * ========================================================= */
+  
+	moSimpleHCneutralExplorer<Neighborhood> explorer(neighborhood, fulleval, comparator, solComparator);
+
+
+	/* =========================================================
+	 *
+	 * the local search algorithm
+	 *
+	 * ========================================================= */
+
+	moTrueContinuator<Neighborhood> continuator;//always continue
+
+	moLocalSearch< moSimpleHCneutralExplorer<Neighborhood> > localSearch(explorer, continuator, eval);
+
+	/* =========================================================
+	 *
+	 * execute the local search from random sollution
+	 *
+	 * ========================================================= */
+
+	Indi solution;
+
+	random(solution);
+
+	//Can be eval here, else it will be done at the beginning of the localSearch
+	//eval(solution);
+
+	std::cout << "initial: " << solution << std::endl ;
+
+	localSearch(solution);
+  
+	std::cout << "final:   " << solution << std::endl ;
+
+}
+
+// A main that catches the exceptions
+
+int main(int argc, char **argv)
+{
+	try{
+		main_function(argc, argv);
+	}
+	catch(exception& e){
+		cout << "Exception: " << e.what() << '\n';
+	}
+	return 1;
+}

trunk/paradiseo-mo/tutorial/oneMax/application/testSimpleTS.cpp

@@ -0,0 +1,203 @@
+//-----------------------------------------------------------------------------
+/** testSimpleHC.cpp
+ *
+ * SV - 12/01/10 
+ *
+ */
+//-----------------------------------------------------------------------------
+
+// standard includes
+#define HAVE_SSTREAM
+
+#include <stdexcept>  // runtime_error 
+#include <iostream>   // cout
+#include <sstream>  // ostrstream, istrstream
+#include <fstream>
+#include <string.h>
+
+// the general include for eo
+#include <eo>
+#include <ga.h>
+
+using namespace std;
+
+//-----------------------------------------------------------------------------
+// fitness function
+#include <funcOneMax.h>
+#include <eoInt.h>
+#include <neighborhood/moOrderNeighborhood.h>
+#include <oneMaxBitNeighbor.h>
+
+#include <newmo>
+
+#include <eval/moFullEvalByModif.h>
+#include <eval/moFullEvalByCopy.h>
+#include <comparator/moNeighborComparator.h>
+#include <comparator/moSolNeighborComparator.h>
+#include <continuator/moTrueContinuator.h>
+#include <algo/moLocalSearch.h>
+#include <explorer/moSimpleHCexplorer.h>
+
+// REPRESENTATION
+//-----------------------------------------------------------------------------
+typedef eoBit<unsigned> Indi;	
+typedef moBitNeighbor<unsigned int> Neighbor ; // incremental evaluation
+typedef moOrderNeighborhood<Neighbor> Neighborhood ;
+
+void main_function(int argc, char **argv)
+{
+	/* =========================================================
+	*
+	* Parameters
+	*
+	* ========================================================= */
+
+	// First define a parser from the command-line arguments
+	eoParser parser(argc, argv);
+
+	// For each parameter, define Parameter, read it through the parser,
+	// and assign the value to the variable
+
+	eoValueParam<uint32_t> seedParam(time(0), "seed", "Random number seed", 'S');
+	parser.processParam( seedParam );
+	unsigned seed = seedParam.value();
+
+	// description of genotype
+	eoValueParam<unsigned int> vecSizeParam(8, "vecSize", "Genotype size", 'V');
+	parser.processParam( vecSizeParam, "Representation" );
+	unsigned vecSize = vecSizeParam.value();
+
+	// the name of the "status" file where all actual parameter values will be saved
+	string str_status = parser.ProgramName() + ".status"; // default value
+	eoValueParam<string> statusParam(str_status.c_str(), "status", "Status file");
+	parser.processParam( statusParam, "Persistence" );
+
+	// do the following AFTER ALL PARAMETERS HAVE BEEN PROCESSED
+	// i.e. in case you need parameters somewhere else, postpone these
+	if (parser.userNeedsHelp()){
+		parser.printHelp(cout);
+		exit(1);
+	}
+	if (statusParam.value() != ""){
+		ofstream os(statusParam.value().c_str());
+		os << parser;// and you can use that file as parameter file
+	}
+
+	/* =========================================================
+	 *
+	 * Random seed
+	 *
+	 * ========================================================= */
+
+	//reproducible random seed: if you don't change SEED above,
+	// you'll aways get the same result, NOT a random run
+	rng.reseed(seed);
+
+
+	/* =========================================================
+	 *
+	 * Eval fitness function
+	 *
+	 * ========================================================= */
+
+	FuncOneMax<Indi> fulleval(vecSize);
+
+
+	/* =========================================================
+	 *
+	 * Initilisation of the solution
+	 *
+	 * ========================================================= */
+
+	// a Indi random initializer
+	eoUniformGenerator<bool> uGen;
+	eoInitFixedLength<Indi> random(vecSize, uGen);
+
+
+	/* =========================================================
+	 *
+	 * evaluation of a neighbor solution
+	 *
+	 * ========================================================= */
+
+	moFullEvalByModif<Neighbor> eval(fulleval);
+
+	//An eval by copy can be used instead of the eval by modif
+	//moFullEvalByCopy<Neighbor> fulleval(eval);
+
+
+	/* =========================================================
+	 *
+	 * Comparator of neighbors
+	 *
+	 * ========================================================= */
+
+	moNeighborComparator<Neighbor> comparator;
+	moSolNeighborComparator<Neighbor> solComparator;
+
+
+	/* =========================================================
+	 *
+	 * the neighborhood of a solution
+	 *
+	 * ========================================================= */
+
+	Neighborhood neighborhood(vecSize);
+
+
+	/* =========================================================
+	 *
+	 * a neighborhood explorer solution
+	 *
+	 * ========================================================= */
+  
+	moSolVectorTabuList<Neighbor> tl(10,10);
+	moDummyIntensification<Neighbor> inten;
+	moDummyDiversification<Neighbor> div;
+	moBestImprAspiration<Neighbor> asp;
+	moTSExplorer<Neighborhood> explorer(neighborhood, eval, comparator, solComparator, tl, inten, div, asp);
+
+
+	/* =========================================================
+	 *
+	 * the local search algorithm
+	 *
+	 * ========================================================= */
+
+	moTrueContinuator<Neighborhood> continuator;//always continue
+
+	moLocalSearch< moTSExplorer<Neighborhood> > localSearch(explorer, continuator, fulleval);
+
+	/* =========================================================
+	 *
+	 * execute the local search from random sollution
+	 *
+	 * ========================================================= */
+
+	Indi solution;
+
+	random(solution);
+
+	//Can be eval here, else it will be done at the beginning of the localSearch
+	//eval(solution);
+
+	std::cout << "initial: " << solution << std::endl ;
+
+	localSearch(solution);
+  
+	std::cout << "final:   " << solution << std::endl ;
+
+}
+
+// A main that catches the exceptions
+
+int main(int argc, char **argv)
+{
+	try{
+		main_function(argc, argv);
+	}
+	catch(exception& e){
+		cout << "Exception: " << e.what() << '\n';
+	}
+	return 1;
+}

trunk/paradiseo-mo/tutorial/oneMax/application/testWithMove.cpp

@@ -0,0 +1,214 @@
+//-----------------------------------------------------------------------------
+/** testSimpleHC.cpp
+ *
+ * SV - 12/01/10 
+ *
+ */
+//-----------------------------------------------------------------------------
+
+// standard includes
+#define HAVE_SSTREAM
+
+#include <stdexcept>  // runtime_error 
+#include <iostream>   // cout
+#include <sstream>  // ostrstream, istrstream
+#include <fstream>
+#include <string.h>
+
+// the general include for eo
+#include <eo>
+#include "ga.h"
+
+using namespace std;
+
+//-----------------------------------------------------------------------------
+// fitness function
+#include <funcOneMax.h>
+
+//#include <eoInt.h>
+//#include <moEmptyNeighbor.h>
+
+#include <continuator/moTrueContinuator.h>
+
+// local search algorithm
+#include <algo/moLocalSearch.h>
+
+// the simple HC explorer
+#include <explorer/moSimpleHCexplorer.h>
+
+// explore the neighborhood of a bit string in order
+#include <neighborhood/moMoveNeighborhood.h>
+
+//#include <moFullEvalBitNeighbor.h>
+
+#include <neighborhood/moMoveNeighbor.h>
+
+#include <bitMove.h>
+#include <bitMove_init.h>
+#include <bitMoveIncrEval.h>
+#include <bitMove_next.h>
+
+// REPRESENTATION
+//-----------------------------------------------------------------------------
+// define your individuals
+typedef eoBit<unsigned> Indi;	
+//typedef OneMaxBitNeighbor<unsigned> Neighbor ; // incremental evaluation
+typedef moMoveNeighbor<BitMove<Indi>, unsigned> Neighbor ; // full evaluation
+typedef moMoveNeighborhood<BitMove<Indi>, unsigned> Neighborhood ;
+
+// GENERAL
+//-----------------------------------------------------------------------------
+
+void main_function(int argc, char **argv)
+{
+  /* =========================================================
+   *
+   * Parameters 
+   *
+   * ========================================================= */
+
+  // First define a parser from the command-line arguments
+  eoParser parser(argc, argv);
+
+  // For each parameter, define Parameter, read it through the parser,
+  // and assign the value to the variable
+
+  eoValueParam<uint32_t> seedParam(time(0), "seed", "Random number seed", 'S');
+  parser.processParam( seedParam );
+  unsigned seed = seedParam.value();
+
+  // description of genotype
+  eoValueParam<unsigned int> vecSizeParam(8, "vecSize", "Genotype size", 'V');
+  parser.processParam( vecSizeParam, "Representation" );
+  unsigned vecSize = vecSizeParam.value();
+
+  string fileOut("out.dat");
+  eoValueParam<string> fileStatParam(fileOut.c_str(), "out", "A file to export results", 'o');
+  parser.processParam( fileStatParam, "Persistence" );
+  fileOut = fileStatParam.value();
+
+  // the name of the "status" file where all actual parameter values will be saved
+  string str_status = parser.ProgramName() + ".status"; // default value
+  eoValueParam<string> statusParam(str_status.c_str(), "status", "Status file");
+  parser.processParam( statusParam, "Persistence" );
+
+  // do the following AFTER ALL PARAMETERS HAVE BEEN PROCESSED
+  // i.e. in case you need parameters somewhere else, postpone these
+  if (parser.userNeedsHelp())
+    {
+      parser.printHelp(cout);
+      exit(1);
+    }
+  if (statusParam.value() != "")
+    {
+      ofstream os(statusParam.value().c_str());
+      os << parser;		// and you can use that file as parameter file
+    }
+
+
+  /* =========================================================
+   *
+   * Random seed
+   *
+   * ========================================================= */
+
+  //reproducible random seed: if you don't change SEED above, 
+  // you'll aways get the same result, NOT a random run
+  rng.reseed(seed);
+
+
+  /* =========================================================
+   *
+   * Eval fitness function
+   *
+   * ========================================================= */
+
+  FuncOneMax<Indi> eval(vecSize);
+
+  OneMaxIncrEval<Indi> incrEval;
+  Neighbor::setIncrEval(incrEval);
+
+  /* =========================================================
+   *
+   * Initilisation of the solution
+   *
+   * ========================================================= */
+
+  // a Indi random initializer
+  eoUniformGenerator<bool> uGen;
+  eoInitFixedLength<Indi> random(vecSize, uGen);
+      
+  /* =========================================================
+   *
+   * evaluation of a neighbor solution
+   *
+   * ========================================================= */
+  
+  // no need if incremental evaluation with OneMaxBitNeighbor
+  //  Neighbor::setFullEvalFunc(eval);
+
+  /* =========================================================
+   *
+   * the neighborhood of a solution
+   *
+   * ========================================================= */
+  BitMove_init<Indi> init;
+  BitMove_next<Indi> next;
+  
+
+  Neighborhood neighborhood(init, next);
+
+  /* =========================================================
+   *
+   * a neighborhood explorator solution
+   *
+   * ========================================================= */
+  
+  moSimpleHCexplorer<Neighborhood> explorer(neighborhood);
+
+  /* =========================================================
+   *
+   * the local search algorithm
+   *
+   * ========================================================= */
+
+  moTrueContinuator<Neighborhood> continuator;
+
+  moLocalSearch< moSimpleHCexplorer<Neighborhood> > localSearch(explorer, continuator);
+
+  /* =========================================================
+   *
+   * execute the local search from random sollution
+   *
+   * ========================================================= */
+
+  Indi solution;
+
+  random(solution);
+
+  eval(solution);
+
+  std::cout << "initial: " << solution << std::endl ;
+
+  localSearch(solution);
+  
+  std::cout << "final:   " << solution << std::endl ;
+
+}
+
+// A main that catches the exceptions
+
+int main(int argc, char **argv)
+{
+
+    try
+    {
+        main_function(argc, argv);
+    }
+    catch(exception& e)
+    {
+        cout << "Exception: " << e.what() << '\n';
+    }
+
+    return 1;
+}

trunk/paradiseo-mo/tutorial/oneMax/src/bitMove.h

@@ -0,0 +1,34 @@
+// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
+
+// "bitMove.h"
+
+#ifndef __bitMove
+#define __bitMove
+
+#include <utility>
+#include <move/moMove.h>
+
+template <class EOT>
+class BitMove : public moMove <EOT> {
+
+public :
+
+typedef EOT EOType;
+  
+  unsigned bit;
+
+  BitMove() {
+    bit = 0;
+  }
+
+  BitMove(unsigned _bit) : bit(_bit) { }
+
+
+  void operator () (EOT & chrom) 
+  {
+    chrom[bit] = !chrom[bit];
+  };
+
+} ;
+
+#endif

trunk/paradiseo-mo/tutorial/oneMax/src/bitMoveIncrEval.h

@@ -0,0 +1,27 @@
+// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
+
+// "incrEval_funcNK.h"
+
+#ifndef __incr_eval_funcNK_h
+#define __incr_eval_funcNK_h
+
+#include <move/moMoveIncrEval.h>
+#include "bitMove.h"
+
+template <class EOT>
+class OneMaxIncrEval : public moMoveIncrEval < BitMove<EOT> > {
+
+public :  
+  OneMaxIncrEval(){ };
+
+  typename EOT::Fitness operator () (const BitMove<EOT> & move, const EOT & chrom) {
+	if(chrom[move.bit]==0){
+	return chrom.fitness()+1;
+}
+	else{
+	return chrom.fitness()-1;
+}  
+};
+};
+
+#endif

trunk/paradiseo-mo/tutorial/oneMax/src/bitMove_init.h

@@ -0,0 +1,21 @@
+// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
+
+// "bitMove_init.h"
+#ifndef __bitMove_init
+#define __bitMove_init
+
+#include <move/moMoveInit.h>
+#include "bitMove.h"
+
+template <class EOT>
+class BitMove_init : public moMoveInit < BitMove<EOT> > {
+  
+public :
+  
+  void operator () (BitMove<EOT> & __move, const EOT & genome) {
+    __move.bit = 0 ;
+  };
+  
+} ;
+
+#endif

trunk/paradiseo-mo/tutorial/oneMax/src/bitMove_next.h

@@ -0,0 +1,33 @@
+// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
+
+// "bitMove_next.h"
+
+#ifndef __bitMove_next_h
+#define __bitMove_next_h
+
+#include <move/moNextMove.h>
+#include "bitMove.h"
+
+template <class EOT>
+class BitMove_next : public moNextMove < BitMove<EOT> > {
+  
+public:
+  BitMove_next()
+  {
+  };
+
+  bool operator () (BitMove<EOT> & __move, const EOT & genome) {
+  
+    if (__move.bit >= (genome.size() - 1)){
+      return false ;
+}
+    else {
+      __move.bit++;
+      return true ;
+    }
+  };
+
+  
+} ;
+
+#endif

trunk/paradiseo-mo/tutorial/oneMax/src/funcOneMax.h

@@ -0,0 +1,33 @@
+// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
+
+//-----------------------------------------------------------------------------
+// funcOneMax.h
+// 25/11/2009 : copy from FuncU.h
+//-----------------------------------------------------------------------------
+
+#ifndef __FuncOneMax
+#define __FuncOneMax
+
+template< class EOT >
+class FuncOneMax : public eoEvalFunc<EOT>
+{
+private:
+  unsigned N;
+    
+public:
+  FuncOneMax(unsigned n) : N(n) {};
+
+  ~FuncOneMax(void) {} ;
+    
+  void operator() (EOT & genome) {
+    unsigned sum = 0;
+
+    for (int i = 0; i < N; i++)
+      sum += genome[i];
+
+    genome.fitness(sum);
+  }
+    
+};
+
+#endif

trunk/paradiseo-mo/tutorial/oneMax/src/funcRoyalRoad.h

@@ -0,0 +1,40 @@
+// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
+
+#ifndef __funcRoyalRoad
+#define __funcRoyalRoad
+
+#include <eoEvalFunc.h>
+
+template< class EOT >
+class FuncRoyalRoad : public eoEvalFunc<EOT>
+{
+  // number of blocks
+  unsigned n;
+
+  // size of a block
+  unsigned k;    
+    
+public:
+  FuncRoyalRoad(unsigned _n, unsigned _k) : n(_n), k(_k) {};
+
+  ~FuncRoyalRoad(void) {} ;
+    
+  virtual void operator() (EOT & _solution)
+  {
+    unsigned sum = 0;
+    unsigned i, j;
+
+    for (i = 0; i < n; i++) {
+      j = 0;
+      while (_solution[i * n + j] && j < k) j++;
+
+      if (j == k)
+	sum++;
+    }
+
+    _solution.fitness(sum);
+  };
+    
+};
+
+#endif

trunk/paradiseo-mo/tutorial/oneMax/src/oneMaxBitNeighbor.h

@@ -0,0 +1,38 @@
+#ifndef _oneMaxBitNeighbor_h
+#define _oneMaxBitNeighbor_h
+
+#include <neighborhood/moBitNeighbor.h>
+#include <ga.h>
+
+/*
+  contener of the neighbor information
+*/
+template< class Fitness >
+class OneMaxBitNeighbor : public moBitNeighbor<Fitness>
+{
+public:
+    typedef eoBit<Fitness> EOType ;
+
+    using moBitNeighbor<Fitness>::bit ;
+
+    /*
+    * incremental evaluation of the solution for the oneMax problem
+    */
+    virtual void eval(EOType & solution) {
+	if (solution[bit] == 0)
+	    fitness(solution.fitness() + 1);
+	else 
+	    fitness(solution.fitness() - 1);
+    };
+};
+
+#endif
+
+
+// Local Variables:
+// coding: iso-8859-1
+// mode: C++
+// c-file-offsets: ((c . 0))
+// c-file-style: "Stroustrup"
+// fill-column: 80
+// End: