doc up-to-date

git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@552 331e1502-861f-0410-8da2-ba01fb791d7f

trunk/paradiseo-moeo/doc/latex/annotated.tex

@@ -0,0 +1,84 @@
+\section{Paradis\-EO-MOEO Class List}
+Here are the classes, structs, unions and interfaces with brief descriptions:\begin{CompactList}
+\item\contentsline{section}{\bf{MOEO$<$ MOEOObjective\-Vector, MOEOFitness, MOEODiversity $>$} (Base class allowing to represent a solution (an individual) for multi-objective optimization )}{\pageref{classMOEO}}{}
+\item\contentsline{section}{\bf{moeo\-Achievement\-Fitness\-Assignment$<$ MOEOT $>$} (Fitness assignment sheme based on the achievement scalarizing function propozed by Wiersbicki (1980) )}{\pageref{classmoeoAchievementFitnessAssignment}}{}
+\item\contentsline{section}{\bf{moeo\-Additive\-Epsilon\-Binary\-Metric$<$ Objective\-Vector $>$} (Additive epsilon binary metric allowing to compare two objective vectors as proposed in Zitzler E., Thiele L., Laumanns M., Fonseca C )}{\pageref{classmoeoAdditiveEpsilonBinaryMetric}}{}
+\item\contentsline{section}{\bf{moeo\-Aggregative\-Comparator$<$ MOEOT $>$} (Functor allowing to compare two solutions according to their fitness and diversity values, each according to its aggregative value )}{\pageref{classmoeoAggregativeComparator}}{}
+\item\contentsline{section}{\bf{moeo\-Algo} (Abstract class for multi-objective algorithms )}{\pageref{classmoeoAlgo}}{}
+\item\contentsline{section}{\bf{moeo\-Archive$<$ MOEOT $>$} (An archive is a secondary population that stores non-dominated solutions )}{\pageref{classmoeoArchive}}{}
+\item\contentsline{section}{\bf{moeo\-Archive\-Objective\-Vector\-Saving\-Updater$<$ MOEOT $>$} (This class allows to save the objective vectors of the solutions contained in an archive into a file at each generation )}{\pageref{classmoeoArchiveObjectiveVectorSavingUpdater}}{}
+\item\contentsline{section}{\bf{moeo\-Archive\-Updater$<$ MOEOT $>$} (This class allows to update the archive at each generation with newly found non-dominated solutions )}{\pageref{classmoeoArchiveUpdater}}{}
+\item\contentsline{section}{\bf{moeo\-Binary\-Indicator\-Based\-Fitness\-Assignment$<$ MOEOT $>$} (Moeo\-Indicator\-Based\-Fitness\-Assignment for binary indicators )}{\pageref{classmoeoBinaryIndicatorBasedFitnessAssignment}}{}
+\item\contentsline{section}{\bf{moeo\-Binary\-Metric$<$ A1, A2, R $>$} (Base class for binary metrics )}{\pageref{classmoeoBinaryMetric}}{}
+\item\contentsline{section}{\bf{moeo\-Binary\-Metric\-Saving\-Updater$<$ MOEOT $>$} (This class allows to save the progression of a binary metric comparing the objective vectors of the current population (or archive) with the objective vectors of the population (or archive) of the generation (n-1) into a file )}{\pageref{classmoeoBinaryMetricSavingUpdater}}{}
+\item\contentsline{section}{\bf{moeo\-Bit\-Vector$<$ MOEOObjective\-Vector, MOEOFitness, MOEODiversity $>$} (This class is an implementationeo of a simple bit-valued \doxyref{moeo\-Vector}{p.}{classmoeoVector} )}{\pageref{classmoeoBitVector}}{}
+\item\contentsline{section}{\bf{moeo\-Combined\-LS$<$ MOEOT, Type $>$} (This class allows to embed a set of local searches that are sequentially applied, and so working and updating the same archive of non-dominated solutions )}{\pageref{classmoeoCombinedLS}}{}
+\item\contentsline{section}{\bf{moeo\-Comparator$<$ MOEOT $>$} (Functor allowing to compare two solutions )}{\pageref{classmoeoComparator}}{}
+\item\contentsline{section}{\bf{moeo\-Contribution\-Metric$<$ Objective\-Vector $>$} (The contribution metric evaluates the proportion of non-dominated solutions given by a Pareto set relatively to another Pareto set (Meunier, Talbi, Reininger: 'A multiobjective genetic algorithm for radio network optimization', in Proc )}{\pageref{classmoeoContributionMetric}}{}
+\item\contentsline{section}{\bf{moeo\-Convert\-Pop\-To\-Objective\-Vectors$<$ MOEOT, Objective\-Vector $>$} (Functor allowing to get a vector of objective vectors from a population )}{\pageref{classmoeoConvertPopToObjectiveVectors}}{}
+\item\contentsline{section}{\bf{moeo\-Criterion\-Based\-Fitness\-Assignment$<$ MOEOT $>$} (Moeo\-Criterion\-Based\-Fitness\-Assignment is a \doxyref{moeo\-Fitness\-Assignment}{p.}{classmoeoFitnessAssignment} for criterion-based strategies )}{\pageref{classmoeoCriterionBasedFitnessAssignment}}{}
+\item\contentsline{section}{\bf{moeo\-Crowding\-Diversity\-Assignment$<$ MOEOT $>$} (Diversity assignment sheme based on crowding proposed in: K )}{\pageref{classmoeoCrowdingDiversityAssignment}}{}
+\item\contentsline{section}{\bf{moeo\-Det\-Tournament\-Select$<$ MOEOT $>$} (Selection strategy that selects ONE individual by deterministic tournament )}{\pageref{classmoeoDetTournamentSelect}}{}
+\item\contentsline{section}{\bf{moeo\-Distance$<$ MOEOT, Type $>$} (The base class for distance computation )}{\pageref{classmoeoDistance}}{}
+\item\contentsline{section}{\bf{moeo\-Distance\-Matrix$<$ MOEOT, Type $>$} (A matrix to compute distances between every pair of individuals contained in a population )}{\pageref{classmoeoDistanceMatrix}}{}
+\item\contentsline{section}{\bf{moeo\-Diversity\-Assignment$<$ MOEOT $>$} (Functor that sets the diversity values of a whole population )}{\pageref{classmoeoDiversityAssignment}}{}
+\item\contentsline{section}{\bf{moeo\-Diversity\-Then\-Fitness\-Comparator$<$ MOEOT $>$} (Functor allowing to compare two solutions according to their diversity values, then according to their fitness values )}{\pageref{classmoeoDiversityThenFitnessComparator}}{}
+\item\contentsline{section}{\bf{moeo\-Dummy\-Diversity\-Assignment$<$ MOEOT $>$} (Moeo\-Dummy\-Diversity\-Assignment is a \doxyref{moeo\-Diversity\-Assignment}{p.}{classmoeoDiversityAssignment} that gives the value '0' as the individual's diversity for a whole population if it is invalid )}{\pageref{classmoeoDummyDiversityAssignment}}{}
+\item\contentsline{section}{\bf{moeo\-Dummy\-Fitness\-Assignment$<$ MOEOT $>$} (Moeo\-Dummy\-Fitness\-Assignment is a \doxyref{moeo\-Fitness\-Assignment}{p.}{classmoeoFitnessAssignment} that gives the value '0' as the individual's fitness for a whole population if it is invalid )}{\pageref{classmoeoDummyFitnessAssignment}}{}
+\item\contentsline{section}{\bf{moeo\-EA$<$ MOEOT $>$} (Abstract class for multi-objective evolutionary algorithms )}{\pageref{classmoeoEA}}{}
+\item\contentsline{section}{\bf{moeo\-Easy\-EA$<$ MOEOT $>$} (An easy class to design multi-objective evolutionary algorithms )}{\pageref{classmoeoEasyEA}}{}
+\item\contentsline{section}{\bf{moeo\-Easy\-EA$<$ MOEOT $>$::eo\-Dummy\-Eval} (\doxyref{Dummy} eval )}{\pageref{classmoeoEasyEA_1_1eoDummyEval}}{}
+\item\contentsline{section}{\bf{moeo\-Easy\-EA$<$ MOEOT $>$::eo\-Dummy\-Select} (\doxyref{Dummy} select )}{\pageref{classmoeoEasyEA_1_1eoDummySelect}}{}
+\item\contentsline{section}{\bf{moeo\-Easy\-EA$<$ MOEOT $>$::eo\-Dummy\-Transform} (\doxyref{Dummy} transform )}{\pageref{classmoeoEasyEA_1_1eoDummyTransform}}{}
+\item\contentsline{section}{\bf{moeo\-Elitist\-Replacement$<$ MOEOT $>$} (Elitist replacement strategy that consists in keeping the N best individuals )}{\pageref{classmoeoElitistReplacement}}{}
+\item\contentsline{section}{\bf{moeo\-Elitist\-Replacement$<$ MOEOT $>$::Cmp} (This object is used to compare solutions in order to sort the population )}{\pageref{classmoeoElitistReplacement_1_1Cmp}}{}
+\item\contentsline{section}{\bf{moeo\-Entropy\-Metric$<$ Objective\-Vector $>$} (The entropy gives an idea of the diversity of a Pareto set relatively to another (Basseur, Seynhaeve, Talbi: 'Design of Multi-objective Evolutionary Algorithms: Application to the Flow-shop Scheduling Problem', in Proc )}{\pageref{classmoeoEntropyMetric}}{}
+\item\contentsline{section}{\bf{moeo\-Environmental\-Replacement$<$ MOEOT $>$} (Environmental replacement strategy that consists in keeping the N best individuals by deleting individuals 1 by 1 and by updating the fitness and diversity values after each deletion )}{\pageref{classmoeoEnvironmentalReplacement}}{}
+\item\contentsline{section}{\bf{moeo\-Environmental\-Replacement$<$ MOEOT $>$::Cmp} (This object is used to compare solutions in order to sort the population )}{\pageref{classmoeoEnvironmentalReplacement_1_1Cmp}}{}
+\item\contentsline{section}{\bf{moeo\-Euclidean\-Distance$<$ MOEOT $>$} (A class allowing to compute an euclidian distance between two solutions in the objective space with normalized objective values (i.e )}{\pageref{classmoeoEuclideanDistance}}{}
+\item\contentsline{section}{\bf{moeo\-Eval\-Func$<$ MOEOT $>$} }{\pageref{classmoeoEvalFunc}}{}
+\item\contentsline{section}{\bf{moeo\-Exp\-Binary\-Indicator\-Based\-Fitness\-Assignment$<$ MOEOT $>$} (Fitness assignment sheme based on an indicator proposed in: E )}{\pageref{classmoeoExpBinaryIndicatorBasedFitnessAssignment}}{}
+\item\contentsline{section}{\bf{moeo\-Fast\-Non\-Dominated\-Sorting\-Fitness\-Assignment$<$ MOEOT $>$} (Fitness assignment sheme based on Pareto-dominance count proposed in: N )}{\pageref{classmoeoFastNonDominatedSortingFitnessAssignment}}{}
+\item\contentsline{section}{\bf{moeo\-Fast\-Non\-Dominated\-Sorting\-Fitness\-Assignment$<$ MOEOT $>$::Objective\-Comparator} (Functor allowing to compare two solutions according to their first objective value, then their second, and so on )}{\pageref{classmoeoFastNonDominatedSortingFitnessAssignment_1_1ObjectiveComparator}}{}
+\item\contentsline{section}{\bf{moeo\-Fitness\-Assignment$<$ MOEOT $>$} (Functor that sets the fitness values of a whole population )}{\pageref{classmoeoFitnessAssignment}}{}
+\item\contentsline{section}{\bf{moeo\-Fitness\-Then\-Diversity\-Comparator$<$ MOEOT $>$} (Functor allowing to compare two solutions according to their fitness values, then according to their diversity values )}{\pageref{classmoeoFitnessThenDiversityComparator}}{}
+\item\contentsline{section}{\bf{moeo\-Front\-By\-Front\-Crowding\-Diversity\-Assignment$<$ MOEOT $>$} (Diversity assignment sheme based on crowding proposed in: K )}{\pageref{classmoeoFrontByFrontCrowdingDiversityAssignment}}{}
+\item\contentsline{section}{\bf{moeo\-Front\-By\-Front\-Sharing\-Diversity\-Assignment$<$ MOEOT $>$} (Sharing assignment scheme on the way it is used in NSGA )}{\pageref{classmoeoFrontByFrontSharingDiversityAssignment}}{}
+\item\contentsline{section}{\bf{moeo\-GDominance\-Objective\-Vector\-Comparator$<$ Objective\-Vector $>$} (This functor class allows to compare 2 objective vectors according to g-dominance )}{\pageref{classmoeoGDominanceObjectiveVectorComparator}}{}
+\item\contentsline{section}{\bf{moeo\-Generational\-Replacement$<$ MOEOT $>$} (Generational replacement: only the new individuals are preserved )}{\pageref{classmoeoGenerationalReplacement}}{}
+\item\contentsline{section}{\bf{moeo\-Hybrid\-LS$<$ MOEOT $>$} (This class allows to apply a multi-objective local search to a number of selected individuals contained in the archive at every generation until a stopping criteria is verified )}{\pageref{classmoeoHybridLS}}{}
+\item\contentsline{section}{\bf{moeo\-Hypervolume\-Binary\-Metric$<$ Objective\-Vector $>$} (Hypervolume binary metric allowing to compare two objective vectors as proposed in Zitzler E., K\~{A}¼nzli S )}{\pageref{classmoeoHypervolumeBinaryMetric}}{}
+\item\contentsline{section}{\bf{moeo\-IBEA$<$ MOEOT $>$} (IBEA (Indicator-Based Evolutionary Algorithm) as described in: E )}{\pageref{classmoeoIBEA}}{}
+\item\contentsline{section}{\bf{moeo\-Indicator\-Based\-Fitness\-Assignment$<$ MOEOT $>$} (Moeo\-Indicator\-Based\-Fitness\-Assignment is a \doxyref{moeo\-Fitness\-Assignment}{p.}{classmoeoFitnessAssignment} for Indicator-based strategies )}{\pageref{classmoeoIndicatorBasedFitnessAssignment}}{}
+\item\contentsline{section}{\bf{moeo\-LS$<$ MOEOT, Type $>$} (Abstract class for local searches applied to multi-objective optimization )}{\pageref{classmoeoLS}}{}
+\item\contentsline{section}{\bf{moeo\-Manhattan\-Distance$<$ MOEOT $>$} (A class allowing to compute the Manhattan distance between two solutions in the objective space normalized objective values (i.e )}{\pageref{classmoeoManhattanDistance}}{}
+\item\contentsline{section}{\bf{moeo\-Metric} (Base class for performance metrics (also known as quality indicators) )}{\pageref{classmoeoMetric}}{}
+\item\contentsline{section}{\bf{moeo\-Normalized\-Distance$<$ MOEOT, Type $>$} (The base class for double distance computation with normalized objective values (i.e )}{\pageref{classmoeoNormalizedDistance}}{}
+\item\contentsline{section}{\bf{moeo\-Normalized\-Solution\-Vs\-Solution\-Binary\-Metric$<$ Objective\-Vector, R $>$} (Base class for binary metrics dedicated to the performance comparison between two solutions's objective vectors using normalized values )}{\pageref{classmoeoNormalizedSolutionVsSolutionBinaryMetric}}{}
+\item\contentsline{section}{\bf{moeo\-NSGA$<$ MOEOT $>$} (NSGA (Non-dominated Sorting Genetic Algorithm) as described in: N )}{\pageref{classmoeoNSGA}}{}
+\item\contentsline{section}{\bf{moeo\-NSGAII$<$ MOEOT $>$} (NSGA-II (Non-dominated Sorting Genetic Algorithm II) as described in: Deb, K., S )}{\pageref{classmoeoNSGAII}}{}
+\item\contentsline{section}{\bf{moeo\-Objective\-Objective\-Vector\-Comparator$<$ Objective\-Vector $>$} (Functor allowing to compare two objective vectors according to their first objective value, then their second, and so on )}{\pageref{classmoeoObjectiveObjectiveVectorComparator}}{}
+\item\contentsline{section}{\bf{moeo\-Objective\-Vector$<$ Objective\-Vector\-Traits, Objective\-Vector\-Type $>$} (Abstract class allowing to represent a solution in the objective space (phenotypic representation) )}{\pageref{classmoeoObjectiveVector}}{}
+\item\contentsline{section}{\bf{moeo\-Objective\-Vector\-Comparator$<$ Objective\-Vector $>$} (Abstract class allowing to compare 2 objective vectors )}{\pageref{classmoeoObjectiveVectorComparator}}{}
+\item\contentsline{section}{\bf{moeo\-Objective\-Vector\-Traits} (A traits class for \doxyref{moeo\-Objective\-Vector}{p.}{classmoeoObjectiveVector} to specify the number of objectives and which ones have to be minimized or maximized )}{\pageref{classmoeoObjectiveVectorTraits}}{}
+\item\contentsline{section}{\bf{moeo\-One\-Objective\-Comparator$<$ MOEOT $>$} (Functor allowing to compare two solutions according to one objective )}{\pageref{classmoeoOneObjectiveComparator}}{}
+\item\contentsline{section}{\bf{moeo\-Pareto\-Based\-Fitness\-Assignment$<$ MOEOT $>$} (Moeo\-Pareto\-Based\-Fitness\-Assignment is a \doxyref{moeo\-Fitness\-Assignment}{p.}{classmoeoFitnessAssignment} for Pareto-based strategies )}{\pageref{classmoeoParetoBasedFitnessAssignment}}{}
+\item\contentsline{section}{\bf{moeo\-Pareto\-Objective\-Vector\-Comparator$<$ Objective\-Vector $>$} (This functor class allows to compare 2 objective vectors according to Pareto dominance )}{\pageref{classmoeoParetoObjectiveVectorComparator}}{}
+\item\contentsline{section}{\bf{moeo\-Random\-Select$<$ MOEOT $>$} (Selection strategy that selects only one element randomly from a whole population )}{\pageref{classmoeoRandomSelect}}{}
+\item\contentsline{section}{\bf{moeo\-Real\-Objective\-Vector$<$ Objective\-Vector\-Traits $>$} (This class allows to represent a solution in the objective space (phenotypic representation) by a std::vector of real values, i.e )}{\pageref{classmoeoRealObjectiveVector}}{}
+\item\contentsline{section}{\bf{moeo\-Real\-Vector$<$ MOEOObjective\-Vector, MOEOFitness, MOEODiversity $>$} (This class is an implementation of a simple double-valued \doxyref{moeo\-Vector}{p.}{classmoeoVector} )}{\pageref{classmoeoRealVector}}{}
+\item\contentsline{section}{\bf{moeo\-Replacement$<$ MOEOT $>$} (Replacement strategy for multi-objective optimization )}{\pageref{classmoeoReplacement}}{}
+\item\contentsline{section}{\bf{moeo\-Roulette\-Select$<$ MOEOT $>$} (Selection strategy that selects ONE individual by using roulette wheel process )}{\pageref{classmoeoRouletteSelect}}{}
+\item\contentsline{section}{\bf{moeo\-Scalar\-Fitness\-Assignment$<$ MOEOT $>$} (Moeo\-Scalar\-Fitness\-Assignment is a \doxyref{moeo\-Fitness\-Assignment}{p.}{classmoeoFitnessAssignment} for scalar strategies )}{\pageref{classmoeoScalarFitnessAssignment}}{}
+\item\contentsline{section}{\bf{moeo\-Select\-From\-Pop\-And\-Arch$<$ MOEOT $>$} (Elitist selection process that consists in choosing individuals in the archive as well as in the current population )}{\pageref{classmoeoSelectFromPopAndArch}}{}
+\item\contentsline{section}{\bf{moeo\-Select\-One$<$ MOEOT $>$} (Selection strategy for multi-objective optimization that selects only one element from a whole population )}{\pageref{classmoeoSelectOne}}{}
+\item\contentsline{section}{\bf{moeo\-Sharing\-Diversity\-Assignment$<$ MOEOT $>$} (Sharing assignment scheme originally porposed by: D )}{\pageref{classmoeoSharingDiversityAssignment}}{}
+\item\contentsline{section}{\bf{moeo\-Solution\-Unary\-Metric$<$ Objective\-Vector, R $>$} (Base class for unary metrics dedicated to the performance evaluation of a single solution's objective vector )}{\pageref{classmoeoSolutionUnaryMetric}}{}
+\item\contentsline{section}{\bf{moeo\-Solution\-Vs\-Solution\-Binary\-Metric$<$ Objective\-Vector, R $>$} (Base class for binary metrics dedicated to the performance comparison between two solutions's objective vectors )}{\pageref{classmoeoSolutionVsSolutionBinaryMetric}}{}
+\item\contentsline{section}{\bf{moeo\-Stoch\-Tournament\-Select$<$ MOEOT $>$} (Selection strategy that selects ONE individual by stochastic tournament )}{\pageref{classmoeoStochTournamentSelect}}{}
+\item\contentsline{section}{\bf{moeo\-Unary\-Indicator\-Based\-Fitness\-Assignment$<$ MOEOT $>$} (Moeo\-Indicator\-Based\-Fitness\-Assignment for unary indicators )}{\pageref{classmoeoUnaryIndicatorBasedFitnessAssignment}}{}
+\item\contentsline{section}{\bf{moeo\-Unary\-Metric$<$ A, R $>$} (Base class for unary metrics )}{\pageref{classmoeoUnaryMetric}}{}
+\item\contentsline{section}{\bf{moeo\-Vector$<$ MOEOObjective\-Vector, MOEOFitness, MOEODiversity, Gene\-Type $>$} (Base class for fixed length chromosomes, just derives from \doxyref{MOEO}{p.}{classMOEO} and std::vector and redirects the smaller than operator to MOEO (objective vector based comparison) )}{\pageref{classmoeoVector}}{}
+\item\contentsline{section}{\bf{moeo\-Vector\-Unary\-Metric$<$ Objective\-Vector, R $>$} (Base class for unary metrics dedicated to the performance evaluation of a Pareto set (a vector of objective vectors) )}{\pageref{classmoeoVectorUnaryMetric}}{}
+\item\contentsline{section}{\bf{moeo\-Vector\-Vs\-Vector\-Binary\-Metric$<$ Objective\-Vector, R $>$} (Base class for binary metrics dedicated to the performance comparison between two Pareto sets (two vectors of objective vectors) )}{\pageref{classmoeoVectorVsVectorBinaryMetric}}{}
+\end{CompactList}

trunk/paradiseo-moeo/doc/latex/classmoeoAlgo.eps

@@ -0,0 +1,229 @@
+%!PS-Adobe-2.0 EPSF-2.0
+%%Title: ClassName
+%%Creator: Doxygen
+%%CreationDate: Time
+%%For: 
+%Magnification: 1.00
+%%Orientation: Portrait
+%%BoundingBox: 0 0 500 52.6316
+%%Pages: 0
+%%BeginSetup
+%%EndSetup
+%%EndComments
+
+% ----- variables -----
+
+/boxwidth 0 def
+/boxheight 40 def
+/fontheight 24 def
+/marginwidth 10 def
+/distx 20 def
+/disty 40 def
+/boundaspect 9.5 def  % aspect ratio of the BoundingBox (width/height)
+/boundx 500 def
+/boundy boundx boundaspect div def
+/xspacing 0 def
+/yspacing 0 def
+/rows 3 def
+/cols 5 def
+/scalefactor 0 def
+/boxfont /Times-Roman findfont fontheight scalefont def
+
+% ----- procedures -----
+
+/dotted { [1 4] 0 setdash } def
+/dashed { [5] 0 setdash } def
+/solid  { [] 0 setdash } def
+
+/max % result = MAX(arg1,arg2)
+{
+  /a exch def
+  /b exch def
+  a b gt {a} {b} ifelse
+} def
+
+/xoffset % result = MAX(0,(scalefactor-(boxwidth*cols+distx*(cols-1)))/2)
+{
+  0 scalefactor boxwidth cols mul distx cols 1 sub mul add sub 2 div max
+} def
+
+/cw % boxwidth = MAX(boxwidth, stringwidth(arg1))
+{
+  /str exch def
+  /boxwidth boxwidth str stringwidth pop max def
+} def
+
+/box % draws a box with text `arg1' at grid pos (arg2,arg3)
+{ gsave
+  2 setlinewidth
+  newpath
+  exch xspacing mul xoffset add
+  exch yspacing mul
+  moveto
+  boxwidth 0 rlineto 
+  0 boxheight rlineto 
+  boxwidth neg 0 rlineto 
+  0 boxheight neg rlineto 
+  closepath
+  dup stringwidth pop neg boxwidth add 2 div
+  boxheight fontheight 2 div sub 2 div
+  rmoveto show stroke
+  grestore
+} def  
+
+/mark
+{ newpath
+  exch xspacing mul xoffset add boxwidth add
+  exch yspacing mul
+  moveto
+  0 boxheight 4 div rlineto
+  boxheight neg 4 div boxheight neg 4 div rlineto
+  closepath
+  eofill
+  stroke
+} def
+
+/arrow
+{ newpath
+  moveto
+  3 -8 rlineto
+  -6 0 rlineto
+  3 8 rlineto
+  closepath
+  eofill
+  stroke
+} def
+
+/out % draws an output connector for the block at (arg1,arg2)
+{
+  newpath
+  exch xspacing mul xoffset add boxwidth 2 div add
+  exch yspacing mul boxheight add
+  /y exch def
+  /x exch def
+  x y moveto
+  0 disty 2 div rlineto 
+  stroke
+  1 eq { x y disty 2 div add arrow } if
+} def
+
+/in % draws an input connector for the block at (arg1,arg2)
+{
+  newpath
+  exch xspacing mul xoffset add boxwidth 2 div add
+  exch yspacing mul disty 2 div sub
+  /y exch def
+  /x exch def
+  x y moveto
+  0 disty 2 div rlineto
+  stroke
+  1 eq { x y disty 2 div add arrow } if
+} def
+
+/hedge
+{
+  exch xspacing mul xoffset add boxwidth 2 div add
+  exch yspacing mul boxheight 2 div sub
+  /y exch def
+  /x exch def
+  newpath
+  x y moveto
+  boxwidth 2 div distx add 0 rlineto
+  stroke
+  1 eq
+  { newpath x boxwidth 2 div distx add add y moveto
+    -8 3 rlineto
+    0 -6 rlineto
+    8 3 rlineto
+    closepath
+    eofill
+    stroke
+  } if
+} def
+
+/vedge
+{
+  /ye exch def
+  /ys exch def
+  /xs exch def
+  newpath
+  xs xspacing mul xoffset add boxwidth 2 div add dup
+  ys yspacing mul boxheight 2 div sub
+  moveto
+  ye yspacing mul boxheight 2 div sub
+  lineto
+  stroke
+} def
+
+/conn % connections the blocks from col `arg1' to `arg2' of row `arg3'
+{
+  /ys exch def
+  /xe exch def
+  /xs exch def
+  newpath
+  xs xspacing mul xoffset add boxwidth 2 div add
+  ys yspacing mul disty 2 div sub
+  moveto
+  xspacing xe xs sub mul 0
+  rlineto
+  stroke
+} def
+
+% ----- main ------
+
+boxfont setfont
+1 boundaspect scale
+(moeoAlgo) cw
+(moeoEA< MOEOT >) cw
+(moeoLS< MOEOT, Type >) cw
+(moeoEasyEA< MOEOT >) cw
+(moeoIBEA< MOEOT >) cw
+(moeoNSGA< MOEOT >) cw
+(moeoNSGAII< MOEOT >) cw
+(moeoCombinedLS< MOEOT, Type >) cw
+/boxwidth boxwidth marginwidth 2 mul add def
+/xspacing boxwidth distx add def
+/yspacing boxheight disty add def
+/scalefactor 
+  boxwidth cols mul distx cols 1 sub mul add
+  boxheight rows mul disty rows 1 sub mul add boundaspect mul 
+  max def
+boundx scalefactor div boundy scalefactor div scale
+
+% ----- classes -----
+
+ (moeoAlgo) 2.75 2 box
+ (moeoEA< MOEOT >) 1.5 1 box
+ (moeoLS< MOEOT, Type >) 4 1 box
+ (moeoEasyEA< MOEOT >) 0 0 box
+ (moeoIBEA< MOEOT >) 1 0 box
+ (moeoNSGA< MOEOT >) 2 0 box
+ (moeoNSGAII< MOEOT >) 3 0 box
+ (moeoCombinedLS< MOEOT, Type >) 4 0 box
+
+% ----- relations -----
+
+solid
+1 2.75 1.25 out
+solid
+1.5 4 2 conn
+solid
+0 1.5 1.75 in
+solid
+1 1.5 0.25 out
+solid
+0 3 1 conn
+solid
+0 4 1.75 in
+solid
+1 4 0.25 out
+solid
+0 0 0.75 in
+solid
+0 1 0.75 in
+solid
+0 2 0.75 in
+solid
+0 3 0.75 in
+solid
+0 4 0.75 in

trunk/paradiseo-moeo/doc/latex/classmoeoAlgo.tex

@@ -0,0 +1,25 @@
+\section{moeo\-Algo Class Reference}
+\label{classmoeoAlgo}\index{moeoAlgo@{moeoAlgo}}
+Abstract class for multi-objective algorithms.  
+
+
+{\tt \#include $<$moeo\-Algo.h$>$}
+
+Inheritance diagram for moeo\-Algo::\begin{figure}[H]
+\begin{center}
+\leavevmode
+\includegraphics[height=1.47368cm]{classmoeoAlgo}
+\end{center}
+\end{figure}
+
+
+\subsection{Detailed Description}
+Abstract class for multi-objective algorithms. 
+
+
+
+Definition at line 19 of file moeo\-Algo.h.
+
+The documentation for this class was generated from the following file:\begin{CompactItemize}
+\item 
+moeo\-Algo.h\end{CompactItemize}

trunk/paradiseo-moeo/doc/latex/classmoeoArchive.tex

@@ -0,0 +1,170 @@
+\section{moeo\-Archive$<$ MOEOT $>$ Class Template Reference}
+\label{classmoeoArchive}\index{moeoArchive@{moeoArchive}}
+An archive is a secondary population that stores non-dominated solutions.  
+
+
+{\tt \#include $<$moeo\-Archive.h$>$}
+
+Inheritance diagram for moeo\-Archive$<$ MOEOT $>$::\begin{figure}[H]
+\begin{center}
+\leavevmode
+\includegraphics[height=4cm]{classmoeoArchive}
+\end{center}
+\end{figure}
+\subsection*{Public Types}
+\begin{CompactItemize}
+\item 
+typedef MOEOT::Objective\-Vector \bf{Objective\-Vector}\label{classmoeoArchive_655f6879b14d7b4e65ea03724e5ee601}
+
+\begin{CompactList}\small\item\em The type of an objective vector for a solution. \item\end{CompactList}\end{CompactItemize}
+\subsection*{Public Member Functions}
+\begin{CompactItemize}
+\item 
+\bf{moeo\-Archive} ()
+\begin{CompactList}\small\item\em Default ctor. \item\end{CompactList}\item 
+\bf{moeo\-Archive} (\bf{moeo\-Objective\-Vector\-Comparator}$<$ \bf{Objective\-Vector} $>$ \&\_\-comparator)
+\begin{CompactList}\small\item\em Ctor. \item\end{CompactList}\item 
+bool \bf{dominates} (const \bf{Objective\-Vector} \&\_\-objective\-Vector) const 
+\begin{CompactList}\small\item\em Returns true if the current archive dominates \_\-objective\-Vector according to the \doxyref{moeo\-Objective\-Vector\-Comparator}{p.}{classmoeoObjectiveVectorComparator} given in the constructor. \item\end{CompactList}\item 
+bool \bf{contains} (const \bf{Objective\-Vector} \&\_\-objective\-Vector) const 
+\begin{CompactList}\small\item\em Returns true if the current archive already contains a solution with the same objective values than \_\-objective\-Vector. \item\end{CompactList}\item 
+void \bf{update} (const MOEOT \&\_\-moeo)
+\begin{CompactList}\small\item\em Updates the archive with a given individual \_\-moeo. \item\end{CompactList}\item 
+void \bf{update} (const \bf{eo\-Pop}$<$ MOEOT $>$ \&\_\-pop)
+\begin{CompactList}\small\item\em Updates the archive with a given population \_\-pop. \item\end{CompactList}\item 
+bool \bf{equals} (const \bf{moeo\-Archive}$<$ MOEOT $>$ \&\_\-arch)
+\begin{CompactList}\small\item\em Returns true if the current archive contains the same objective vectors than the given archive \_\-arch. \item\end{CompactList}\end{CompactItemize}
+\subsection*{Private Attributes}
+\begin{CompactItemize}
+\item 
+\bf{moeo\-Objective\-Vector\-Comparator}$<$ \bf{Objective\-Vector} $>$ \& \bf{comparator}\label{classmoeoArchive_59d96d161a53b3ee50df8ca5ad0d0642}
+
+\begin{CompactList}\small\item\em The \doxyref{moeo\-Objective\-Vector\-Comparator}{p.}{classmoeoObjectiveVectorComparator} used to compare solutions. \item\end{CompactList}\item 
+\bf{moeo\-Pareto\-Objective\-Vector\-Comparator}$<$ \bf{Objective\-Vector} $>$ \bf{pareto\-Comparator}\label{classmoeoArchive_eefd5b82b1d7f7d60c72683da9cd8682}
+
+\begin{CompactList}\small\item\em A \doxyref{moeo\-Objective\-Vector\-Comparator}{p.}{classmoeoObjectiveVectorComparator} based on Pareto dominance (used as default). \item\end{CompactList}\end{CompactItemize}
+
+
+\subsection{Detailed Description}
+\subsubsection*{template$<$class MOEOT$>$ class moeo\-Archive$<$ MOEOT $>$}
+
+An archive is a secondary population that stores non-dominated solutions. 
+
+
+
+Definition at line 24 of file moeo\-Archive.h.
+
+\subsection{Constructor \& Destructor Documentation}
+\index{moeoArchive@{moeo\-Archive}!moeoArchive@{moeoArchive}}
+\index{moeoArchive@{moeoArchive}!moeoArchive@{moeo\-Archive}}
+\subsubsection{\setlength{\rightskip}{0pt plus 5cm}template$<$class MOEOT$>$ \bf{moeo\-Archive}$<$ MOEOT $>$::\bf{moeo\-Archive} ()\hspace{0.3cm}{\tt  [inline]}}\label{classmoeoArchive_a593ca2122484d255b5aa5a0463bd913}
+
+
+Default ctor. 
+
+The \doxyref{moeo\-Objective\-Vector\-Comparator}{p.}{classmoeoObjectiveVectorComparator} used to compare solutions is based on Pareto dominance 
+
+Definition at line 44 of file moeo\-Archive.h.\index{moeoArchive@{moeo\-Archive}!moeoArchive@{moeoArchive}}
+\index{moeoArchive@{moeoArchive}!moeoArchive@{moeo\-Archive}}
+\subsubsection{\setlength{\rightskip}{0pt plus 5cm}template$<$class MOEOT$>$ \bf{moeo\-Archive}$<$ MOEOT $>$::\bf{moeo\-Archive} (\bf{moeo\-Objective\-Vector\-Comparator}$<$ \bf{Objective\-Vector} $>$ \& {\em \_\-comparator})\hspace{0.3cm}{\tt  [inline]}}\label{classmoeoArchive_75e5fee339ca463405434f6f48497de0}
+
+
+Ctor. 
+
+\begin{Desc}
+\item[Parameters:]
+\begin{description}
+\item[{\em \_\-comparator}]the \doxyref{moeo\-Objective\-Vector\-Comparator}{p.}{classmoeoObjectiveVectorComparator} used to compare solutions \end{description}
+\end{Desc}
+
+
+Definition at line 52 of file moeo\-Archive.h.
+
+\subsection{Member Function Documentation}
+\index{moeoArchive@{moeo\-Archive}!dominates@{dominates}}
+\index{dominates@{dominates}!moeoArchive@{moeo\-Archive}}
+\subsubsection{\setlength{\rightskip}{0pt plus 5cm}template$<$class MOEOT$>$ bool \bf{moeo\-Archive}$<$ MOEOT $>$::dominates (const \bf{Objective\-Vector} \& {\em \_\-objective\-Vector}) const\hspace{0.3cm}{\tt  [inline]}}\label{classmoeoArchive_67f667e822e0485c6976c6ee0d18f70a}
+
+
+Returns true if the current archive dominates \_\-objective\-Vector according to the \doxyref{moeo\-Objective\-Vector\-Comparator}{p.}{classmoeoObjectiveVectorComparator} given in the constructor. 
+
+\begin{Desc}
+\item[Parameters:]
+\begin{description}
+\item[{\em \_\-objective\-Vector}]the objective vector to compare with the current archive \end{description}
+\end{Desc}
+
+
+Definition at line 60 of file moeo\-Archive.h.
+
+References moeo\-Archive$<$ MOEOT $>$::comparator.\index{moeoArchive@{moeo\-Archive}!contains@{contains}}
+\index{contains@{contains}!moeoArchive@{moeo\-Archive}}
+\subsubsection{\setlength{\rightskip}{0pt plus 5cm}template$<$class MOEOT$>$ bool \bf{moeo\-Archive}$<$ MOEOT $>$::contains (const \bf{Objective\-Vector} \& {\em \_\-objective\-Vector}) const\hspace{0.3cm}{\tt  [inline]}}\label{classmoeoArchive_748d5c75d713075288257192be1986a9}
+
+
+Returns true if the current archive already contains a solution with the same objective values than \_\-objective\-Vector. 
+
+\begin{Desc}
+\item[Parameters:]
+\begin{description}
+\item[{\em \_\-objective\-Vector}]the objective vector to compare with the current archive \end{description}
+\end{Desc}
+
+
+Definition at line 78 of file moeo\-Archive.h.
+
+Referenced by moeo\-Archive$<$ MOEOT $>$::equals().\index{moeoArchive@{moeo\-Archive}!update@{update}}
+\index{update@{update}!moeoArchive@{moeo\-Archive}}
+\subsubsection{\setlength{\rightskip}{0pt plus 5cm}template$<$class MOEOT$>$ void \bf{moeo\-Archive}$<$ MOEOT $>$::update (const MOEOT \& {\em \_\-moeo})\hspace{0.3cm}{\tt  [inline]}}\label{classmoeoArchive_6df0acd84cab4cb53682f2e6ca850e9a}
+
+
+Updates the archive with a given individual \_\-moeo. 
+
+\begin{Desc}
+\item[Parameters:]
+\begin{description}
+\item[{\em \_\-moeo}]the given individual \end{description}
+\end{Desc}
+
+
+Definition at line 95 of file moeo\-Archive.h.
+
+References moeo\-Archive$<$ MOEOT $>$::comparator.
+
+Referenced by moeo\-Archive$<$ MOEOT $>$::update().\index{moeoArchive@{moeo\-Archive}!update@{update}}
+\index{update@{update}!moeoArchive@{moeo\-Archive}}
+\subsubsection{\setlength{\rightskip}{0pt plus 5cm}template$<$class MOEOT$>$ void \bf{moeo\-Archive}$<$ MOEOT $>$::update (const \bf{eo\-Pop}$<$ MOEOT $>$ \& {\em \_\-pop})\hspace{0.3cm}{\tt  [inline]}}\label{classmoeoArchive_877bf4f0937f6be263e2686df4e77cf3}
+
+
+Updates the archive with a given population \_\-pop. 
+
+\begin{Desc}
+\item[Parameters:]
+\begin{description}
+\item[{\em \_\-pop}]the given population \end{description}
+\end{Desc}
+
+
+Definition at line 138 of file moeo\-Archive.h.
+
+References moeo\-Archive$<$ MOEOT $>$::update().\index{moeoArchive@{moeo\-Archive}!equals@{equals}}
+\index{equals@{equals}!moeoArchive@{moeo\-Archive}}
+\subsubsection{\setlength{\rightskip}{0pt plus 5cm}template$<$class MOEOT$>$ bool \bf{moeo\-Archive}$<$ MOEOT $>$::equals (const \bf{moeo\-Archive}$<$ MOEOT $>$ \& {\em \_\-arch})\hspace{0.3cm}{\tt  [inline]}}\label{classmoeoArchive_937088a6054ba1b50db651f50dda3a72}
+
+
+Returns true if the current archive contains the same objective vectors than the given archive \_\-arch. 
+
+\begin{Desc}
+\item[Parameters:]
+\begin{description}
+\item[{\em \_\-arch}]the given archive \end{description}
+\end{Desc}
+
+
+Definition at line 151 of file moeo\-Archive.h.
+
+References moeo\-Archive$<$ MOEOT $>$::contains().
+
+The documentation for this class was generated from the following file:\begin{CompactItemize}
+\item 
+moeo\-Archive.h\end{CompactItemize}

trunk/paradiseo-moeo/doc/latex/classmoeoFitnessAssignment.eps

@@ -0,0 +1,257 @@
+%!PS-Adobe-2.0 EPSF-2.0
+%%Title: ClassName
+%%Creator: Doxygen
+%%CreationDate: Time
+%%For: 
+%Magnification: 1.00
+%%Orientation: Portrait
+%%BoundingBox: 0 0 500 54.0541
+%%Pages: 0
+%%BeginSetup
+%%EndSetup
+%%EndComments
+
+% ----- variables -----
+
+/boxwidth 0 def
+/boxheight 40 def
+/fontheight 24 def
+/marginwidth 10 def
+/distx 20 def
+/disty 40 def
+/boundaspect 9.25 def  % aspect ratio of the BoundingBox (width/height)
+/boundx 500 def
+/boundy boundx boundaspect div def
+/xspacing 0 def
+/yspacing 0 def
+/rows 6 def
+/cols 6 def
+/scalefactor 0 def
+/boxfont /Times-Roman findfont fontheight scalefont def
+
+% ----- procedures -----
+
+/dotted { [1 4] 0 setdash } def
+/dashed { [5] 0 setdash } def
+/solid  { [] 0 setdash } def
+
+/max % result = MAX(arg1,arg2)
+{
+  /a exch def
+  /b exch def
+  a b gt {a} {b} ifelse
+} def
+
+/xoffset % result = MAX(0,(scalefactor-(boxwidth*cols+distx*(cols-1)))/2)
+{
+  0 scalefactor boxwidth cols mul distx cols 1 sub mul add sub 2 div max
+} def
+
+/cw % boxwidth = MAX(boxwidth, stringwidth(arg1))
+{
+  /str exch def
+  /boxwidth boxwidth str stringwidth pop max def
+} def
+
+/box % draws a box with text `arg1' at grid pos (arg2,arg3)
+{ gsave
+  2 setlinewidth
+  newpath
+  exch xspacing mul xoffset add
+  exch yspacing mul
+  moveto
+  boxwidth 0 rlineto 
+  0 boxheight rlineto 
+  boxwidth neg 0 rlineto 
+  0 boxheight neg rlineto 
+  closepath
+  dup stringwidth pop neg boxwidth add 2 div
+  boxheight fontheight 2 div sub 2 div
+  rmoveto show stroke
+  grestore
+} def  
+
+/mark
+{ newpath
+  exch xspacing mul xoffset add boxwidth add
+  exch yspacing mul
+  moveto
+  0 boxheight 4 div rlineto
+  boxheight neg 4 div boxheight neg 4 div rlineto
+  closepath
+  eofill
+  stroke
+} def
+
+/arrow
+{ newpath
+  moveto
+  3 -8 rlineto
+  -6 0 rlineto
+  3 8 rlineto
+  closepath
+  eofill
+  stroke
+} def
+
+/out % draws an output connector for the block at (arg1,arg2)
+{
+  newpath
+  exch xspacing mul xoffset add boxwidth 2 div add
+  exch yspacing mul boxheight add
+  /y exch def
+  /x exch def
+  x y moveto
+  0 disty 2 div rlineto 
+  stroke
+  1 eq { x y disty 2 div add arrow } if
+} def
+
+/in % draws an input connector for the block at (arg1,arg2)
+{
+  newpath
+  exch xspacing mul xoffset add boxwidth 2 div add
+  exch yspacing mul disty 2 div sub
+  /y exch def
+  /x exch def
+  x y moveto
+  0 disty 2 div rlineto
+  stroke
+  1 eq { x y disty 2 div add arrow } if
+} def
+
+/hedge
+{
+  exch xspacing mul xoffset add boxwidth 2 div add
+  exch yspacing mul boxheight 2 div sub
+  /y exch def
+  /x exch def
+  newpath
+  x y moveto
+  boxwidth 2 div distx add 0 rlineto
+  stroke
+  1 eq
+  { newpath x boxwidth 2 div distx add add y moveto
+    -8 3 rlineto
+    0 -6 rlineto
+    8 3 rlineto
+    closepath
+    eofill
+    stroke
+  } if
+} def
+
+/vedge
+{
+  /ye exch def
+  /ys exch def
+  /xs exch def
+  newpath
+  xs xspacing mul xoffset add boxwidth 2 div add dup
+  ys yspacing mul boxheight 2 div sub
+  moveto
+  ye yspacing mul boxheight 2 div sub
+  lineto
+  stroke
+} def
+
+/conn % connections the blocks from col `arg1' to `arg2' of row `arg3'
+{
+  /ys exch def
+  /xe exch def
+  /xs exch def
+  newpath
+  xs xspacing mul xoffset add boxwidth 2 div add
+  ys yspacing mul disty 2 div sub
+  moveto
+  xspacing xe xs sub mul 0
+  rlineto
+  stroke
+} def
+
+% ----- main ------
+
+boxfont setfont
+1 boundaspect scale
+(moeoFitnessAssignment< MOEOT >) cw
+(eoUF< eoPop< MOEOT > &, void >) cw
+(eoFunctorBase) cw
+(moeoCriterionBasedFitnessAssignment< MOEOT >) cw
+(moeoDummyFitnessAssignment< MOEOT >) cw
+(moeoIndicatorBasedFitnessAssignment< MOEOT >) cw
+(moeoParetoBasedFitnessAssignment< MOEOT >) cw
+(moeoScalarFitnessAssignment< MOEOT >) cw
+(moeoBinaryIndicatorBasedFitnessAssignment< MOEOT >) cw
+(moeoUnaryIndicatorBasedFitnessAssignment< MOEOT >) cw
+(moeoFastNonDominatedSortingFitnessAssignment< MOEOT >) cw
+(moeoAchievementFitnessAssignment< MOEOT >) cw
+(moeoExpBinaryIndicatorBasedFitnessAssignment< MOEOT >) cw
+/boxwidth boxwidth marginwidth 2 mul add def
+/xspacing boxwidth distx add def
+/yspacing boxheight disty add def
+/scalefactor 
+  boxwidth cols mul distx cols 1 sub mul add
+  boxheight rows mul disty rows 1 sub mul add boundaspect mul 
+  max def
+boundx scalefactor div boundy scalefactor div scale
+
+% ----- classes -----
+
+ (moeoFitnessAssignment< MOEOT >) 2 3 box
+ (eoUF< eoPop< MOEOT > &, void >) 2 4 box
+ (eoFunctorBase) 2 5 box
+ (moeoCriterionBasedFitnessAssignment< MOEOT >) 0 2 box
+ (moeoDummyFitnessAssignment< MOEOT >) 1 2 box
+ (moeoIndicatorBasedFitnessAssignment< MOEOT >) 2 2 box
+ (moeoParetoBasedFitnessAssignment< MOEOT >) 3.5 2 box
+ (moeoScalarFitnessAssignment< MOEOT >) 4.5 2 box
+ (moeoBinaryIndicatorBasedFitnessAssignment< MOEOT >) 1.5 1 box
+ (moeoUnaryIndicatorBasedFitnessAssignment< MOEOT >) 2.5 1 box
+ (moeoFastNonDominatedSortingFitnessAssignment< MOEOT >) 3.5 1 box
+ (moeoAchievementFitnessAssignment< MOEOT >) 4.5 1 box
+ (moeoExpBinaryIndicatorBasedFitnessAssignment< MOEOT >) 1.5 0 box
+
+% ----- relations -----
+
+solid
+0 2 3 out
+solid
+1 2 4 in
+solid
+0 2 4 out
+solid
+1 2 5 in
+solid
+1 2 2.25 out
+solid
+0 4.5 3 conn
+solid
+0 0 2.75 in
+solid
+0 1 2.75 in
+solid
+0 2 2.75 in
+solid
+1 2 1.25 out
+solid
+1.5 2.5 2 conn
+solid
+0 3.5 2.75 in
+solid
+1 3.5 1.25 out
+solid
+0 4.5 2.75 in
+solid
+1 4.5 1.25 out
+solid
+0 1.5 1.75 in
+solid
+1 1.5 0.25 out
+solid
+0 2.5 1.75 in
+solid
+0 3.5 1.75 in
+solid
+0 4.5 1.75 in
+solid
+0 1.5 0.75 in

trunk/paradiseo-moeo/doc/latex/classmoeoFitnessAssignment.tex

@@ -0,0 +1,75 @@
+\section{moeo\-Fitness\-Assignment$<$ MOEOT $>$ Class Template Reference}
+\label{classmoeoFitnessAssignment}\index{moeoFitnessAssignment@{moeoFitnessAssignment}}
+Functor that sets the fitness values of a whole population.  
+
+
+{\tt \#include $<$moeo\-Fitness\-Assignment.h$>$}
+
+Inheritance diagram for moeo\-Fitness\-Assignment$<$ MOEOT $>$::\begin{figure}[H]
+\begin{center}
+\leavevmode
+\includegraphics[height=1.51351cm]{classmoeoFitnessAssignment}
+\end{center}
+\end{figure}
+\subsection*{Public Types}
+\begin{CompactItemize}
+\item 
+typedef MOEOT::Objective\-Vector \bf{Objective\-Vector}\label{classmoeoFitnessAssignment_6271b8215ea5df4fc1f19e513cd1d533}
+
+\begin{CompactList}\small\item\em The type for objective vector. \item\end{CompactList}\end{CompactItemize}
+\subsection*{Public Member Functions}
+\begin{CompactItemize}
+\item 
+virtual void \bf{update\-By\-Deleting} (\bf{eo\-Pop}$<$ MOEOT $>$ \&\_\-pop, \bf{Objective\-Vector} \&\_\-obj\-Vec)=0
+\begin{CompactList}\small\item\em Updates the fitness values of the whole population \_\-pop by taking the deletion of the objective vector \_\-obj\-Vec into account. \item\end{CompactList}\item 
+void \bf{update\-By\-Deleting} (\bf{eo\-Pop}$<$ MOEOT $>$ \&\_\-pop, MOEOT \&\_\-moeo)
+\begin{CompactList}\small\item\em Updates the fitness values of the whole population \_\-pop by taking the deletion of the individual \_\-moeo into account. \item\end{CompactList}\end{CompactItemize}
+
+
+\subsection{Detailed Description}
+\subsubsection*{template$<$class MOEOT$>$ class moeo\-Fitness\-Assignment$<$ MOEOT $>$}
+
+Functor that sets the fitness values of a whole population. 
+
+
+
+Definition at line 23 of file moeo\-Fitness\-Assignment.h.
+
+\subsection{Member Function Documentation}
+\index{moeoFitnessAssignment@{moeo\-Fitness\-Assignment}!updateByDeleting@{updateByDeleting}}
+\index{updateByDeleting@{updateByDeleting}!moeoFitnessAssignment@{moeo\-Fitness\-Assignment}}
+\subsubsection{\setlength{\rightskip}{0pt plus 5cm}template$<$class MOEOT$>$ virtual void \bf{moeo\-Fitness\-Assignment}$<$ MOEOT $>$::update\-By\-Deleting (\bf{eo\-Pop}$<$ MOEOT $>$ \& {\em \_\-pop}, \bf{Objective\-Vector} \& {\em \_\-obj\-Vec})\hspace{0.3cm}{\tt  [pure virtual]}}\label{classmoeoFitnessAssignment_4922629569eddc9be049b3ead1ab0269}
+
+
+Updates the fitness values of the whole population \_\-pop by taking the deletion of the objective vector \_\-obj\-Vec into account. 
+
+\begin{Desc}
+\item[Parameters:]
+\begin{description}
+\item[{\em \_\-pop}]the population \item[{\em \_\-obj\-Vec}]the objective vector \end{description}
+\end{Desc}
+
+
+Implemented in \bf{moeo\-Achievement\-Fitness\-Assignment$<$ MOEOT $>$} \doxyref{p.}{classmoeoAchievementFitnessAssignment_a6a2ae6c263dbcea3c16cde4c8a1e5fc}, \bf{moeo\-Dummy\-Fitness\-Assignment$<$ MOEOT $>$} \doxyref{p.}{classmoeoDummyFitnessAssignment_6e87d4a8ff8f43a7001a21a13795d00e}, \bf{moeo\-Exp\-Binary\-Indicator\-Based\-Fitness\-Assignment$<$ MOEOT $>$} \doxyref{p.}{classmoeoExpBinaryIndicatorBasedFitnessAssignment_1ad61bf146d3b24b41ef0575360f664b}, and \bf{moeo\-Fast\-Non\-Dominated\-Sorting\-Fitness\-Assignment$<$ MOEOT $>$} \doxyref{p.}{classmoeoFastNonDominatedSortingFitnessAssignment_8d16de444f6c7a73c28c9087b652656e}.
+
+Referenced by moeo\-Fitness\-Assignment$<$ MOEOT $>$::update\-By\-Deleting().\index{moeoFitnessAssignment@{moeo\-Fitness\-Assignment}!updateByDeleting@{updateByDeleting}}
+\index{updateByDeleting@{updateByDeleting}!moeoFitnessAssignment@{moeo\-Fitness\-Assignment}}
+\subsubsection{\setlength{\rightskip}{0pt plus 5cm}template$<$class MOEOT$>$ void \bf{moeo\-Fitness\-Assignment}$<$ MOEOT $>$::update\-By\-Deleting (\bf{eo\-Pop}$<$ MOEOT $>$ \& {\em \_\-pop}, MOEOT \& {\em \_\-moeo})\hspace{0.3cm}{\tt  [inline]}}\label{classmoeoFitnessAssignment_057fd85764abb5de35adb52b5ef695be}
+
+
+Updates the fitness values of the whole population \_\-pop by taking the deletion of the individual \_\-moeo into account. 
+
+\begin{Desc}
+\item[Parameters:]
+\begin{description}
+\item[{\em \_\-pop}]the population \item[{\em \_\-moeo}]the individual \end{description}
+\end{Desc}
+
+
+Definition at line 44 of file moeo\-Fitness\-Assignment.h.
+
+References moeo\-Fitness\-Assignment$<$ MOEOT $>$::update\-By\-Deleting().
+
+The documentation for this class was generated from the following file:\begin{CompactItemize}
+\item 
+moeo\-Fitness\-Assignment.h\end{CompactItemize}

trunk/paradiseo-moeo/doc/latex/classmoeoNormalizedSolutionVsSolutionBinaryMetric.tex

@@ -0,0 +1,84 @@
+\section{moeo\-Normalized\-Solution\-Vs\-Solution\-Binary\-Metric$<$ Objective\-Vector, R $>$ Class Template Reference}
+\label{classmoeoNormalizedSolutionVsSolutionBinaryMetric}\index{moeoNormalizedSolutionVsSolutionBinaryMetric@{moeoNormalizedSolutionVsSolutionBinaryMetric}}
+Base class for binary metrics dedicated to the performance comparison between two solutions's objective vectors using normalized values.  
+
+
+{\tt \#include $<$moeo\-Normalized\-Solution\-Vs\-Solution\-Binary\-Metric.h$>$}
+
+Inheritance diagram for moeo\-Normalized\-Solution\-Vs\-Solution\-Binary\-Metric$<$ Objective\-Vector, R $>$::\begin{figure}[H]
+\begin{center}
+\leavevmode
+\includegraphics[height=3.30189cm]{classmoeoNormalizedSolutionVsSolutionBinaryMetric}
+\end{center}
+\end{figure}
+\subsection*{Public Member Functions}
+\begin{CompactItemize}
+\item 
+\bf{moeo\-Normalized\-Solution\-Vs\-Solution\-Binary\-Metric} ()\label{classmoeoNormalizedSolutionVsSolutionBinaryMetric_e58174a553269d3e8b0685a1f22b8333}
+
+\begin{CompactList}\small\item\em Default ctr for any \doxyref{moeo\-Normalized\-Solution\-Vs\-Solution\-Binary\-Metric}{p.}{classmoeoNormalizedSolutionVsSolutionBinaryMetric} object. \item\end{CompactList}\item 
+void \bf{setup} (double \_\-min, double \_\-max, unsigned int \_\-obj)
+\begin{CompactList}\small\item\em Sets the lower bound (\_\-min) and the upper bound (\_\-max) for the objective \_\-obj. \item\end{CompactList}\item 
+virtual void \bf{setup} (\bf{eo\-Real\-Interval} \_\-real\-Interval, unsigned int \_\-obj)
+\begin{CompactList}\small\item\em Sets the lower bound and the upper bound for the objective \_\-obj using a \doxyref{eo\-Real\-Interval} object. \item\end{CompactList}\end{CompactItemize}
+\subsection*{Static Public Member Functions}
+\begin{CompactItemize}
+\item 
+static double \bf{tiny} ()\label{classmoeoNormalizedSolutionVsSolutionBinaryMetric_d0ccbdceb71b9d2d6ae8ceec1af9dcdb}
+
+\begin{CompactList}\small\item\em Returns a very small value that can be used to avoid extreme cases (where the min bound == the max bound). \item\end{CompactList}\end{CompactItemize}
+\subsection*{Protected Attributes}
+\begin{CompactItemize}
+\item 
+std::vector$<$ \bf{eo\-Real\-Interval} $>$ \bf{bounds}\label{classmoeoNormalizedSolutionVsSolutionBinaryMetric_81bff9a83c74f7f7f8a1db28c09c4c38}
+
+\begin{CompactList}\small\item\em the bounds for every objective (bounds[i] = bounds for the objective i) \item\end{CompactList}\end{CompactItemize}
+
+
+\subsection{Detailed Description}
+\subsubsection*{template$<$class Objective\-Vector, class R$>$ class moeo\-Normalized\-Solution\-Vs\-Solution\-Binary\-Metric$<$ Objective\-Vector, R $>$}
+
+Base class for binary metrics dedicated to the performance comparison between two solutions's objective vectors using normalized values. 
+
+Then, indicator values lie in the interval [-1,1]. Note that you have to set the bounds for every objective before using the operator(). 
+
+
+
+Definition at line 26 of file moeo\-Normalized\-Solution\-Vs\-Solution\-Binary\-Metric.h.
+
+\subsection{Member Function Documentation}
+\index{moeoNormalizedSolutionVsSolutionBinaryMetric@{moeo\-Normalized\-Solution\-Vs\-Solution\-Binary\-Metric}!setup@{setup}}
+\index{setup@{setup}!moeoNormalizedSolutionVsSolutionBinaryMetric@{moeo\-Normalized\-Solution\-Vs\-Solution\-Binary\-Metric}}
+\subsubsection{\setlength{\rightskip}{0pt plus 5cm}template$<$class Objective\-Vector, class R$>$ void \bf{moeo\-Normalized\-Solution\-Vs\-Solution\-Binary\-Metric}$<$ Objective\-Vector, R $>$::setup (double {\em \_\-min}, double {\em \_\-max}, unsigned int {\em \_\-obj})\hspace{0.3cm}{\tt  [inline]}}\label{classmoeoNormalizedSolutionVsSolutionBinaryMetric_1f56a2f59a9b0548ad0ab691c8a02334}
+
+
+Sets the lower bound (\_\-min) and the upper bound (\_\-max) for the objective \_\-obj. 
+
+\begin{Desc}
+\item[Parameters:]
+\begin{description}
+\item[{\em \_\-min}]lower bound \item[{\em \_\-max}]upper bound \item[{\em \_\-obj}]the objective index \end{description}
+\end{Desc}
+
+
+Definition at line 50 of file moeo\-Normalized\-Solution\-Vs\-Solution\-Binary\-Metric.h.
+
+Referenced by moeo\-Exp\-Binary\-Indicator\-Based\-Fitness\-Assignment$<$ MOEOT $>$::setup().\index{moeoNormalizedSolutionVsSolutionBinaryMetric@{moeo\-Normalized\-Solution\-Vs\-Solution\-Binary\-Metric}!setup@{setup}}
+\index{setup@{setup}!moeoNormalizedSolutionVsSolutionBinaryMetric@{moeo\-Normalized\-Solution\-Vs\-Solution\-Binary\-Metric}}
+\subsubsection{\setlength{\rightskip}{0pt plus 5cm}template$<$class Objective\-Vector, class R$>$ virtual void \bf{moeo\-Normalized\-Solution\-Vs\-Solution\-Binary\-Metric}$<$ Objective\-Vector, R $>$::setup (\bf{eo\-Real\-Interval} {\em \_\-real\-Interval}, unsigned int {\em \_\-obj})\hspace{0.3cm}{\tt  [inline, virtual]}}\label{classmoeoNormalizedSolutionVsSolutionBinaryMetric_0693a23c68e3fe0bb546e34926dcfe93}
+
+
+Sets the lower bound and the upper bound for the objective \_\-obj using a \doxyref{eo\-Real\-Interval} object. 
+
+\begin{Desc}
+\item[Parameters:]
+\begin{description}
+\item[{\em \_\-real\-Interval}]the \doxyref{eo\-Real\-Interval} object \item[{\em \_\-obj}]the objective index \end{description}
+\end{Desc}
+
+
+Definition at line 66 of file moeo\-Normalized\-Solution\-Vs\-Solution\-Binary\-Metric.h.
+
+The documentation for this class was generated from the following file:\begin{CompactItemize}
+\item 
+moeo\-Normalized\-Solution\-Vs\-Solution\-Binary\-Metric.h\end{CompactItemize}

trunk/paradiseo-moeo/doc/latex/doxygen.sty

@@ -0,0 +1,78 @@
+\NeedsTeXFormat{LaTeX2e}
+\ProvidesPackage{doxygen}
+\RequirePackage{calc}
+\RequirePackage{array}
+\pagestyle{fancyplain}
+\newcommand{\clearemptydoublepage}{\newpage{\pagestyle{empty}\cleardoublepage}}
+\renewcommand{\chaptermark}[1]{\markboth{#1}{}}
+\renewcommand{\sectionmark}[1]{\markright{\thesection\ #1}}
+\lhead[\fancyplain{}{\bfseries\thepage}]
+        {\fancyplain{}{\bfseries\rightmark}}
+\rhead[\fancyplain{}{\bfseries\leftmark}]
+        {\fancyplain{}{\bfseries\thepage}}
+\rfoot[\fancyplain{}{\bfseries\scriptsize Generated on Thu Jul 5 17:36:46 2007 for Paradis\-EO-MOEO by Doxygen }]{}
+\lfoot[]{\fancyplain{}{\bfseries\scriptsize Generated on Thu Jul 5 17:36:46 2007 for Paradis\-EO-MOEO by Doxygen }}
+\cfoot{}
+\newenvironment{Code}
+{\footnotesize}
+{\normalsize}
+\newcommand{\doxyref}[3]{\textbf{#1} (\textnormal{#2}\,\pageref{#3})}
+\newenvironment{DocInclude}
+{\footnotesize}
+{\normalsize}
+\newenvironment{VerbInclude}
+{\footnotesize}
+{\normalsize}
+\newenvironment{Image}
+{\begin{figure}[H]}
+{\end{figure}}
+\newenvironment{ImageNoCaption}{}{}
+\newenvironment{CompactList}
+{\begin{list}{}{
+  \setlength{\leftmargin}{0.5cm}
+  \setlength{\itemsep}{0pt}
+  \setlength{\parsep}{0pt}
+  \setlength{\topsep}{0pt}
+  \renewcommand{\makelabel}{\hfill}}}
+{\end{list}}
+\newenvironment{CompactItemize}
+{
+  \begin{itemize}
+  \setlength{\itemsep}{-3pt}
+  \setlength{\parsep}{0pt}
+  \setlength{\topsep}{0pt}
+  \setlength{\partopsep}{0pt}
+}
+{\end{itemize}}
+\newcommand{\PBS}[1]{\let\temp=\\#1\let\\=\temp}
+\newlength{\tmplength}
+\newenvironment{TabularC}[1]
+{
+\setlength{\tmplength}
+     {\linewidth/(#1)-\tabcolsep*2-\arrayrulewidth*(#1+1)/(#1)}
+      \par\begin{tabular*}{\linewidth}
+             {*{#1}{|>{\PBS\raggedright\hspace{0pt}}p{\the\tmplength}}|}
+}
+{\end{tabular*}\par}
+\newcommand{\entrylabel}[1]{
+   {\parbox[b]{\labelwidth-4pt}{\makebox[0pt][l]{\textbf{#1}}\vspace{1.5\baselineskip}}}}
+\newenvironment{Desc}
+{\begin{list}{}
+  {
+    \settowidth{\labelwidth}{40pt}
+    \setlength{\leftmargin}{\labelwidth}
+    \setlength{\parsep}{0pt}
+    \setlength{\itemsep}{-4pt}
+    \renewcommand{\makelabel}{\entrylabel}
+  }
+}
+{\end{list}}
+\newenvironment{Indent}
+  {\begin{list}{}{\setlength{\leftmargin}{0.5cm}}
+      \item[]\ignorespaces}
+  {\unskip\end{list}}
+\setlength{\parindent}{0cm}
+\setlength{\parskip}{0.2cm}
+\addtocounter{secnumdepth}{1}
+\sloppy
+\usepackage[T1]{fontenc}

trunk/paradiseo-moeo/doc/latex/hierarchy.tex

@@ -0,0 +1,230 @@
+\section{Paradis\-EO-MOEO Class Hierarchy}
+This inheritance list is sorted roughly, but not completely, alphabetically:\begin{CompactList}
+\item eo\-Functor\-Base{\tt  [external]}\begin{CompactList}
+\item eo\-BF$<$ A1, A2, R $>${\tt  [external]}\begin{CompactList}
+\item eo\-Replacement$<$ EOT $>${\tt  [external]}\begin{CompactList}
+\item eo\-Generational\-Replacement$<$ MOEOT $>${\tt  [external]}\begin{CompactList}
+\item \contentsline{section}{moeo\-Generational\-Replacement$<$ MOEOT $>$}{\pageref{classmoeoGenerationalReplacement}}{}
+\end{CompactList}
+\end{CompactList}
+\item eo\-Replacement$<$ MOEOT $>${\tt  [external]}\begin{CompactList}
+\item \contentsline{section}{moeo\-Replacement$<$ MOEOT $>$}{\pageref{classmoeoReplacement}}{}
+\begin{CompactList}
+\item \contentsline{section}{moeo\-Elitist\-Replacement$<$ MOEOT $>$}{\pageref{classmoeoElitistReplacement}}{}
+\item \contentsline{section}{moeo\-Environmental\-Replacement$<$ MOEOT $>$}{\pageref{classmoeoEnvironmentalReplacement}}{}
+\item \contentsline{section}{moeo\-Generational\-Replacement$<$ MOEOT $>$}{\pageref{classmoeoGenerationalReplacement}}{}
+\end{CompactList}
+\end{CompactList}
+\item eo\-Select$<$ MOEOT $>${\tt  [external]}\begin{CompactList}
+\item \contentsline{section}{moeo\-Easy\-EA$<$ MOEOT $>$::eo\-Dummy\-Select}{\pageref{classmoeoEasyEA_1_1eoDummySelect}}{}
+\end{CompactList}
+\item \contentsline{section}{moeo\-Binary\-Metric$<$ A1, A2, R $>$}{\pageref{classmoeoBinaryMetric}}{}
+\begin{CompactList}
+\item \contentsline{section}{moeo\-Solution\-Vs\-Solution\-Binary\-Metric$<$ Objective\-Vector, R $>$}{\pageref{classmoeoSolutionVsSolutionBinaryMetric}}{}
+\begin{CompactList}
+\item \contentsline{section}{moeo\-Normalized\-Solution\-Vs\-Solution\-Binary\-Metric$<$ Objective\-Vector, R $>$}{\pageref{classmoeoNormalizedSolutionVsSolutionBinaryMetric}}{}
+\end{CompactList}
+\item \contentsline{section}{moeo\-Solution\-Vs\-Solution\-Binary\-Metric$<$ Objective\-Vector, double $>$}{\pageref{classmoeoSolutionVsSolutionBinaryMetric}}{}
+\begin{CompactList}
+\item \contentsline{section}{moeo\-Normalized\-Solution\-Vs\-Solution\-Binary\-Metric$<$ Objective\-Vector, double $>$}{\pageref{classmoeoNormalizedSolutionVsSolutionBinaryMetric}}{}
+\begin{CompactList}
+\item \contentsline{section}{moeo\-Additive\-Epsilon\-Binary\-Metric$<$ Objective\-Vector $>$}{\pageref{classmoeoAdditiveEpsilonBinaryMetric}}{}
+\item \contentsline{section}{moeo\-Hypervolume\-Binary\-Metric$<$ Objective\-Vector $>$}{\pageref{classmoeoHypervolumeBinaryMetric}}{}
+\end{CompactList}
+\end{CompactList}
+\item \contentsline{section}{moeo\-Vector\-Vs\-Vector\-Binary\-Metric$<$ Objective\-Vector, R $>$}{\pageref{classmoeoVectorVsVectorBinaryMetric}}{}
+\item \contentsline{section}{moeo\-Vector\-Vs\-Vector\-Binary\-Metric$<$ Objective\-Vector, double $>$}{\pageref{classmoeoVectorVsVectorBinaryMetric}}{}
+\begin{CompactList}
+\item \contentsline{section}{moeo\-Contribution\-Metric$<$ Objective\-Vector $>$}{\pageref{classmoeoContributionMetric}}{}
+\item \contentsline{section}{moeo\-Entropy\-Metric$<$ Objective\-Vector $>$}{\pageref{classmoeoEntropyMetric}}{}
+\end{CompactList}
+\end{CompactList}
+\item \contentsline{section}{moeo\-Comparator$<$ MOEOT $>$}{\pageref{classmoeoComparator}}{}
+\begin{CompactList}
+\item \contentsline{section}{moeo\-Aggregative\-Comparator$<$ MOEOT $>$}{\pageref{classmoeoAggregativeComparator}}{}
+\item \contentsline{section}{moeo\-Diversity\-Then\-Fitness\-Comparator$<$ MOEOT $>$}{\pageref{classmoeoDiversityThenFitnessComparator}}{}
+\item \contentsline{section}{moeo\-Fast\-Non\-Dominated\-Sorting\-Fitness\-Assignment$<$ MOEOT $>$::Objective\-Comparator}{\pageref{classmoeoFastNonDominatedSortingFitnessAssignment_1_1ObjectiveComparator}}{}
+\item \contentsline{section}{moeo\-Fitness\-Then\-Diversity\-Comparator$<$ MOEOT $>$}{\pageref{classmoeoFitnessThenDiversityComparator}}{}
+\item \contentsline{section}{moeo\-One\-Objective\-Comparator$<$ MOEOT $>$}{\pageref{classmoeoOneObjectiveComparator}}{}
+\end{CompactList}
+\item \contentsline{section}{moeo\-Distance$<$ MOEOT, Type $>$}{\pageref{classmoeoDistance}}{}
+\begin{CompactList}
+\item \contentsline{section}{moeo\-Normalized\-Distance$<$ MOEOT, Type $>$}{\pageref{classmoeoNormalizedDistance}}{}
+\end{CompactList}
+\item \contentsline{section}{moeo\-Distance$<$ MOEOT, double $>$}{\pageref{classmoeoDistance}}{}
+\begin{CompactList}
+\item \contentsline{section}{moeo\-Normalized\-Distance$<$ MOEOT $>$}{\pageref{classmoeoNormalizedDistance}}{}
+\begin{CompactList}
+\item \contentsline{section}{moeo\-Euclidean\-Distance$<$ MOEOT $>$}{\pageref{classmoeoEuclideanDistance}}{}
+\item \contentsline{section}{moeo\-Manhattan\-Distance$<$ MOEOT $>$}{\pageref{classmoeoManhattanDistance}}{}
+\end{CompactList}
+\end{CompactList}
+\item \contentsline{section}{moeo\-Objective\-Vector\-Comparator$<$ Objective\-Vector $>$}{\pageref{classmoeoObjectiveVectorComparator}}{}
+\begin{CompactList}
+\item \contentsline{section}{moeo\-GDominance\-Objective\-Vector\-Comparator$<$ Objective\-Vector $>$}{\pageref{classmoeoGDominanceObjectiveVectorComparator}}{}
+\item \contentsline{section}{moeo\-Objective\-Objective\-Vector\-Comparator$<$ Objective\-Vector $>$}{\pageref{classmoeoObjectiveObjectiveVectorComparator}}{}
+\item \contentsline{section}{moeo\-Pareto\-Objective\-Vector\-Comparator$<$ Objective\-Vector $>$}{\pageref{classmoeoParetoObjectiveVectorComparator}}{}
+\end{CompactList}
+\end{CompactList}
+\item eo\-BF$<$ const const Objective\-Vector \&, Objective\-Vector \&, double $>${\tt  [external]}\begin{CompactList}
+\item \contentsline{section}{moeo\-Binary\-Metric$<$ const const Objective\-Vector \&, Objective\-Vector \&, double $>$}{\pageref{classmoeoBinaryMetric}}{}
+\end{CompactList}
+\item eo\-BF$<$ const const Objective\-Vector \&, Objective\-Vector \&, R $>${\tt  [external]}\begin{CompactList}
+\item \contentsline{section}{moeo\-Binary\-Metric$<$ const const Objective\-Vector \&, Objective\-Vector \&, R $>$}{\pageref{classmoeoBinaryMetric}}{}
+\end{CompactList}
+\item eo\-BF$<$ const const std::vector$<$ Objective\-Vector $>$ \&, std::vector$<$ Objective\-Vector $>$ \&, double $>${\tt  [external]}\begin{CompactList}
+\item \contentsline{section}{moeo\-Binary\-Metric$<$ const const std::vector$<$ Objective\-Vector $>$ \&, std::vector$<$ Objective\-Vector $>$ \&, double $>$}{\pageref{classmoeoBinaryMetric}}{}
+\end{CompactList}
+\item eo\-BF$<$ const const std::vector$<$ Objective\-Vector $>$ \&, std::vector$<$ Objective\-Vector $>$ \&, R $>${\tt  [external]}\begin{CompactList}
+\item \contentsline{section}{moeo\-Binary\-Metric$<$ const const std::vector$<$ Objective\-Vector $>$ \&, std::vector$<$ Objective\-Vector $>$ \&, R $>$}{\pageref{classmoeoBinaryMetric}}{}
+\end{CompactList}
+\item eo\-BF$<$ Type, moeo\-Archive$<$ MOEOT $>$ \&, void $>${\tt  [external]}\begin{CompactList}
+\item \contentsline{section}{moeo\-LS$<$ MOEOT, Type $>$}{\pageref{classmoeoLS}}{}
+\begin{CompactList}
+\item \contentsline{section}{moeo\-Combined\-LS$<$ MOEOT, Type $>$}{\pageref{classmoeoCombinedLS}}{}
+\end{CompactList}
+\end{CompactList}
+\item eo\-F$<$ void $>${\tt  [external]}\begin{CompactList}
+\item eo\-Updater{\tt  [external]}\begin{CompactList}
+\item \contentsline{section}{moeo\-Archive\-Objective\-Vector\-Saving\-Updater$<$ MOEOT $>$}{\pageref{classmoeoArchiveObjectiveVectorSavingUpdater}}{}
+\item \contentsline{section}{moeo\-Archive\-Updater$<$ MOEOT $>$}{\pageref{classmoeoArchiveUpdater}}{}
+\item \contentsline{section}{moeo\-Binary\-Metric\-Saving\-Updater$<$ MOEOT $>$}{\pageref{classmoeoBinaryMetricSavingUpdater}}{}
+\item \contentsline{section}{moeo\-Hybrid\-LS$<$ MOEOT $>$}{\pageref{classmoeoHybridLS}}{}
+\end{CompactList}
+\end{CompactList}
+\item eo\-UF$<$ A1, R $>${\tt  [external]}\begin{CompactList}
+\item eo\-Algo$<$ MOEOT $>${\tt  [external]}\begin{CompactList}
+\item \contentsline{section}{moeo\-EA$<$ MOEOT $>$}{\pageref{classmoeoEA}}{}
+\begin{CompactList}
+\item \contentsline{section}{moeo\-Easy\-EA$<$ MOEOT $>$}{\pageref{classmoeoEasyEA}}{}
+\item \contentsline{section}{moeo\-IBEA$<$ MOEOT $>$}{\pageref{classmoeoIBEA}}{}
+\item \contentsline{section}{moeo\-NSGA$<$ MOEOT $>$}{\pageref{classmoeoNSGA}}{}
+\item \contentsline{section}{moeo\-NSGAII$<$ MOEOT $>$}{\pageref{classmoeoNSGAII}}{}
+\end{CompactList}
+\end{CompactList}
+\item eo\-Eval\-Func$<$ MOEOT $>${\tt  [external]}\begin{CompactList}
+\item \contentsline{section}{moeo\-Easy\-EA$<$ MOEOT $>$::eo\-Dummy\-Eval}{\pageref{classmoeoEasyEA_1_1eoDummyEval}}{}
+\item \contentsline{section}{moeo\-Eval\-Func$<$ MOEOT $>$}{\pageref{classmoeoEvalFunc}}{}
+\end{CompactList}
+\item eo\-Select\-One$<$ EOT, Worth\-T $>${\tt  [external]}\begin{CompactList}
+\item eo\-Random\-Select$<$ MOEOT $>${\tt  [external]}\begin{CompactList}
+\item \contentsline{section}{moeo\-Random\-Select$<$ MOEOT $>$}{\pageref{classmoeoRandomSelect}}{}
+\end{CompactList}
+\end{CompactList}
+\item eo\-Select\-One$<$ MOEOT $>${\tt  [external]}\begin{CompactList}
+\item \contentsline{section}{moeo\-Select\-One$<$ MOEOT $>$}{\pageref{classmoeoSelectOne}}{}
+\begin{CompactList}
+\item \contentsline{section}{moeo\-Det\-Tournament\-Select$<$ MOEOT $>$}{\pageref{classmoeoDetTournamentSelect}}{}
+\item \contentsline{section}{moeo\-Random\-Select$<$ MOEOT $>$}{\pageref{classmoeoRandomSelect}}{}
+\item \contentsline{section}{moeo\-Roulette\-Select$<$ MOEOT $>$}{\pageref{classmoeoRouletteSelect}}{}
+\item \contentsline{section}{moeo\-Select\-From\-Pop\-And\-Arch$<$ MOEOT $>$}{\pageref{classmoeoSelectFromPopAndArch}}{}
+\item \contentsline{section}{moeo\-Stoch\-Tournament\-Select$<$ MOEOT $>$}{\pageref{classmoeoStochTournamentSelect}}{}
+\end{CompactList}
+\end{CompactList}
+\item eo\-Transform$<$ MOEOT $>${\tt  [external]}\begin{CompactList}
+\item \contentsline{section}{moeo\-Easy\-EA$<$ MOEOT $>$::eo\-Dummy\-Transform}{\pageref{classmoeoEasyEA_1_1eoDummyTransform}}{}
+\end{CompactList}
+\item \contentsline{section}{moeo\-Convert\-Pop\-To\-Objective\-Vectors$<$ MOEOT, Objective\-Vector $>$}{\pageref{classmoeoConvertPopToObjectiveVectors}}{}
+\end{CompactList}
+\item eo\-UF$<$ A, R $>${\tt  [external]}\begin{CompactList}
+\item \contentsline{section}{moeo\-Unary\-Metric$<$ A, R $>$}{\pageref{classmoeoUnaryMetric}}{}
+\end{CompactList}
+\item eo\-UF$<$ const eo\-Pop$<$ MOEOT $>$ \&, void $>${\tt  [external]}\begin{CompactList}
+\item \contentsline{section}{moeo\-Distance\-Matrix$<$ MOEOT, Type $>$}{\pageref{classmoeoDistanceMatrix}}{}
+\end{CompactList}
+\item eo\-UF$<$ const Objective\-Vector \&, R $>${\tt  [external]}\begin{CompactList}
+\item \contentsline{section}{moeo\-Unary\-Metric$<$ const Objective\-Vector \&, R $>$}{\pageref{classmoeoUnaryMetric}}{}
+\begin{CompactList}
+\item \contentsline{section}{moeo\-Solution\-Unary\-Metric$<$ Objective\-Vector, R $>$}{\pageref{classmoeoSolutionUnaryMetric}}{}
+\end{CompactList}
+\end{CompactList}
+\item eo\-UF$<$ const std::vector$<$ Objective\-Vector $>$ \&, R $>${\tt  [external]}\begin{CompactList}
+\item \contentsline{section}{moeo\-Unary\-Metric$<$ const std::vector$<$ Objective\-Vector $>$ \&, R $>$}{\pageref{classmoeoUnaryMetric}}{}
+\begin{CompactList}
+\item \contentsline{section}{moeo\-Vector\-Unary\-Metric$<$ Objective\-Vector, R $>$}{\pageref{classmoeoVectorUnaryMetric}}{}
+\end{CompactList}
+\end{CompactList}
+\item eo\-UF$<$ eo\-Pop$<$ MOEOT $>$ \&, void $>${\tt  [external]}\begin{CompactList}
+\item \contentsline{section}{moeo\-Diversity\-Assignment$<$ MOEOT $>$}{\pageref{classmoeoDiversityAssignment}}{}
+\begin{CompactList}
+\item \contentsline{section}{moeo\-Crowding\-Diversity\-Assignment$<$ MOEOT $>$}{\pageref{classmoeoCrowdingDiversityAssignment}}{}
+\begin{CompactList}
+\item \contentsline{section}{moeo\-Front\-By\-Front\-Crowding\-Diversity\-Assignment$<$ MOEOT $>$}{\pageref{classmoeoFrontByFrontCrowdingDiversityAssignment}}{}
+\end{CompactList}
+\item \contentsline{section}{moeo\-Dummy\-Diversity\-Assignment$<$ MOEOT $>$}{\pageref{classmoeoDummyDiversityAssignment}}{}
+\item \contentsline{section}{moeo\-Sharing\-Diversity\-Assignment$<$ MOEOT $>$}{\pageref{classmoeoSharingDiversityAssignment}}{}
+\begin{CompactList}
+\item \contentsline{section}{moeo\-Front\-By\-Front\-Sharing\-Diversity\-Assignment$<$ MOEOT $>$}{\pageref{classmoeoFrontByFrontSharingDiversityAssignment}}{}
+\end{CompactList}
+\end{CompactList}
+\item \contentsline{section}{moeo\-Fitness\-Assignment$<$ MOEOT $>$}{\pageref{classmoeoFitnessAssignment}}{}
+\begin{CompactList}
+\item \contentsline{section}{moeo\-Criterion\-Based\-Fitness\-Assignment$<$ MOEOT $>$}{\pageref{classmoeoCriterionBasedFitnessAssignment}}{}
+\item \contentsline{section}{moeo\-Dummy\-Fitness\-Assignment$<$ MOEOT $>$}{\pageref{classmoeoDummyFitnessAssignment}}{}
+\item \contentsline{section}{moeo\-Indicator\-Based\-Fitness\-Assignment$<$ MOEOT $>$}{\pageref{classmoeoIndicatorBasedFitnessAssignment}}{}
+\begin{CompactList}
+\item \contentsline{section}{moeo\-Binary\-Indicator\-Based\-Fitness\-Assignment$<$ MOEOT $>$}{\pageref{classmoeoBinaryIndicatorBasedFitnessAssignment}}{}
+\begin{CompactList}
+\item \contentsline{section}{moeo\-Exp\-Binary\-Indicator\-Based\-Fitness\-Assignment$<$ MOEOT $>$}{\pageref{classmoeoExpBinaryIndicatorBasedFitnessAssignment}}{}
+\end{CompactList}
+\item \contentsline{section}{moeo\-Unary\-Indicator\-Based\-Fitness\-Assignment$<$ MOEOT $>$}{\pageref{classmoeoUnaryIndicatorBasedFitnessAssignment}}{}
+\end{CompactList}
+\item \contentsline{section}{moeo\-Pareto\-Based\-Fitness\-Assignment$<$ MOEOT $>$}{\pageref{classmoeoParetoBasedFitnessAssignment}}{}
+\begin{CompactList}
+\item \contentsline{section}{moeo\-Fast\-Non\-Dominated\-Sorting\-Fitness\-Assignment$<$ MOEOT $>$}{\pageref{classmoeoFastNonDominatedSortingFitnessAssignment}}{}
+\end{CompactList}
+\item \contentsline{section}{moeo\-Scalar\-Fitness\-Assignment$<$ MOEOT $>$}{\pageref{classmoeoScalarFitnessAssignment}}{}
+\begin{CompactList}
+\item \contentsline{section}{moeo\-Achievement\-Fitness\-Assignment$<$ MOEOT $>$}{\pageref{classmoeoAchievementFitnessAssignment}}{}
+\end{CompactList}
+\end{CompactList}
+\end{CompactList}
+\item \contentsline{section}{moeo\-Metric}{\pageref{classmoeoMetric}}{}
+\begin{CompactList}
+\item \contentsline{section}{moeo\-Binary\-Metric$<$ A1, A2, R $>$}{\pageref{classmoeoBinaryMetric}}{}
+\item \contentsline{section}{moeo\-Binary\-Metric$<$ const const Objective\-Vector \&, Objective\-Vector \&, double $>$}{\pageref{classmoeoBinaryMetric}}{}
+\item \contentsline{section}{moeo\-Binary\-Metric$<$ const const Objective\-Vector \&, Objective\-Vector \&, R $>$}{\pageref{classmoeoBinaryMetric}}{}
+\item \contentsline{section}{moeo\-Binary\-Metric$<$ const const std::vector$<$ Objective\-Vector $>$ \&, std::vector$<$ Objective\-Vector $>$ \&, double $>$}{\pageref{classmoeoBinaryMetric}}{}
+\item \contentsline{section}{moeo\-Binary\-Metric$<$ const const std::vector$<$ Objective\-Vector $>$ \&, std::vector$<$ Objective\-Vector $>$ \&, R $>$}{\pageref{classmoeoBinaryMetric}}{}
+\item \contentsline{section}{moeo\-Unary\-Metric$<$ A, R $>$}{\pageref{classmoeoUnaryMetric}}{}
+\item \contentsline{section}{moeo\-Unary\-Metric$<$ const Objective\-Vector \&, R $>$}{\pageref{classmoeoUnaryMetric}}{}
+\item \contentsline{section}{moeo\-Unary\-Metric$<$ const std::vector$<$ Objective\-Vector $>$ \&, R $>$}{\pageref{classmoeoUnaryMetric}}{}
+\end{CompactList}
+\end{CompactList}
+\item eo\-Object{\tt  [external]}\begin{CompactList}
+\item EO$<$ MOEOObjective\-Vector $>${\tt  [external]}\begin{CompactList}
+\item \contentsline{section}{MOEO$<$ MOEOObjective\-Vector, MOEOFitness, MOEODiversity $>$}{\pageref{classMOEO}}{}
+\begin{CompactList}
+\item \contentsline{section}{moeo\-Vector$<$ MOEOObjective\-Vector, MOEOFitness, MOEODiversity, Gene\-Type $>$}{\pageref{classmoeoVector}}{}
+\item \contentsline{section}{moeo\-Vector$<$ MOEOObjective\-Vector, MOEOFitness, MOEODiversity, bool $>$}{\pageref{classmoeoVector}}{}
+\begin{CompactList}
+\item \contentsline{section}{moeo\-Bit\-Vector$<$ MOEOObjective\-Vector, MOEOFitness, MOEODiversity $>$}{\pageref{classmoeoBitVector}}{}
+\end{CompactList}
+\item \contentsline{section}{moeo\-Vector$<$ MOEOObjective\-Vector, MOEOFitness, MOEODiversity, double $>$}{\pageref{classmoeoVector}}{}
+\begin{CompactList}
+\item \contentsline{section}{moeo\-Real\-Vector$<$ MOEOObjective\-Vector, MOEOFitness, MOEODiversity $>$}{\pageref{classmoeoRealVector}}{}
+\end{CompactList}
+\end{CompactList}
+\end{CompactList}
+\item eo\-Pop$<$ MOEOT $>${\tt  [external]}\begin{CompactList}
+\item \contentsline{section}{moeo\-Archive$<$ MOEOT $>$}{\pageref{classmoeoArchive}}{}
+\end{CompactList}
+\end{CompactList}
+\item eo\-Printable{\tt  [external]}\begin{CompactList}
+\item eo\-Persistent{\tt  [external]}\begin{CompactList}
+\item EO$<$ MOEOObjective\-Vector $>${\tt  [external]}\item eo\-Pop$<$ MOEOT $>${\tt  [external]}\end{CompactList}
+\end{CompactList}
+\item \contentsline{section}{moeo\-Algo}{\pageref{classmoeoAlgo}}{}
+\begin{CompactList}
+\item \contentsline{section}{moeo\-EA$<$ MOEOT $>$}{\pageref{classmoeoEA}}{}
+\item \contentsline{section}{moeo\-LS$<$ MOEOT, Type $>$}{\pageref{classmoeoLS}}{}
+\end{CompactList}
+\item \contentsline{section}{moeo\-Elitist\-Replacement$<$ MOEOT $>$::Cmp}{\pageref{classmoeoElitistReplacement_1_1Cmp}}{}
+\item \contentsline{section}{moeo\-Environmental\-Replacement$<$ MOEOT $>$::Cmp}{\pageref{classmoeoEnvironmentalReplacement_1_1Cmp}}{}
+\item \contentsline{section}{moeo\-Objective\-Vector$<$ Objective\-Vector\-Traits, Objective\-Vector\-Type $>$}{\pageref{classmoeoObjectiveVector}}{}
+\item \contentsline{section}{moeo\-Objective\-Vector$<$ Objective\-Vector\-Traits, double $>$}{\pageref{classmoeoObjectiveVector}}{}
+\begin{CompactList}
+\item \contentsline{section}{moeo\-Real\-Objective\-Vector$<$ Objective\-Vector\-Traits $>$}{\pageref{classmoeoRealObjectiveVector}}{}
+\end{CompactList}
+\item \contentsline{section}{moeo\-Objective\-Vector\-Traits}{\pageref{classmoeoObjectiveVectorTraits}}{}
+\end{CompactList}

trunk/paradiseo-moeo/doc/latex/pages.tex

@@ -0,0 +1,5 @@
+\section{Paradis\-EO-MOEO Related Pages}
+Here is a list of all related documentation pages:\begin{CompactList}
+\item \contentsline{section}{Related webpages}{\pageref{webpages}}{}
+
+\end{CompactList}

trunk/paradiseo-moeo/doc/latex/refman.tex

@@ -0,0 +1,119 @@
+\documentclass[a4paper]{book}
+\usepackage{a4wide}
+\usepackage{makeidx}
+\usepackage{fancyhdr}
+\usepackage{graphicx}
+\usepackage{multicol}
+\usepackage{float}
+\usepackage{textcomp}
+\usepackage{alltt}
+\usepackage{doxygen}
+\makeindex
+\setcounter{tocdepth}{1}
+\renewcommand{\footrulewidth}{0.4pt}
+\begin{document}
+\begin{titlepage}
+\vspace*{7cm}
+\begin{center}
+{\Large Paradis\-EO-MOEO Reference Manual\\[1ex]\large 1.0-beta }\\
+\vspace*{1cm}
+{\large Generated by Doxygen 1.4.7}\\
+\vspace*{0.5cm}
+{\small Thu Jul 5 17:36:46 2007}\\
+\end{center}
+\end{titlepage}
+\clearemptydoublepage
+\pagenumbering{roman}
+\tableofcontents
+\clearemptydoublepage
+\pagenumbering{arabic}
+\chapter{Welcome to Paradis\-EO-MOEO }
+\label{index}\input{main}
+\chapter{Paradis\-EO-MOEO Hierarchical Index}
+\input{hierarchy}
+\chapter{Paradis\-EO-MOEO Class Index}
+\input{annotated}
+\chapter{Paradis\-EO-MOEO Class Documentation}
+\input{classMOEO}
+\include{classmoeoAchievementFitnessAssignment}
+\include{classmoeoAdditiveEpsilonBinaryMetric}
+\include{classmoeoAggregativeComparator}
+\include{classmoeoAlgo}
+\include{classmoeoArchive}
+\include{classmoeoArchiveObjectiveVectorSavingUpdater}
+\include{classmoeoArchiveUpdater}
+\include{classmoeoBinaryIndicatorBasedFitnessAssignment}
+\include{classmoeoBinaryMetric}
+\include{classmoeoBinaryMetricSavingUpdater}
+\include{classmoeoBitVector}
+\include{classmoeoCombinedLS}
+\include{classmoeoComparator}
+\include{classmoeoContributionMetric}
+\include{classmoeoConvertPopToObjectiveVectors}
+\include{classmoeoCriterionBasedFitnessAssignment}
+\include{classmoeoCrowdingDiversityAssignment}
+\include{classmoeoDetTournamentSelect}
+\include{classmoeoDistance}
+\include{classmoeoDistanceMatrix}
+\include{classmoeoDiversityAssignment}
+\include{classmoeoDiversityThenFitnessComparator}
+\include{classmoeoDummyDiversityAssignment}
+\include{classmoeoDummyFitnessAssignment}
+\include{classmoeoEA}
+\include{classmoeoEasyEA}
+\include{classmoeoEasyEA_1_1eoDummyEval}
+\include{classmoeoEasyEA_1_1eoDummySelect}
+\include{classmoeoEasyEA_1_1eoDummyTransform}
+\include{classmoeoElitistReplacement}
+\include{classmoeoElitistReplacement_1_1Cmp}
+\include{classmoeoEntropyMetric}
+\include{classmoeoEnvironmentalReplacement}
+\include{classmoeoEnvironmentalReplacement_1_1Cmp}
+\include{classmoeoEuclideanDistance}
+\include{classmoeoEvalFunc}
+\include{classmoeoExpBinaryIndicatorBasedFitnessAssignment}
+\include{classmoeoFastNonDominatedSortingFitnessAssignment}
+\include{classmoeoFastNonDominatedSortingFitnessAssignment_1_1ObjectiveComparator}
+\include{classmoeoFitnessAssignment}
+\include{classmoeoFitnessThenDiversityComparator}
+\include{classmoeoFrontByFrontCrowdingDiversityAssignment}
+\include{classmoeoFrontByFrontSharingDiversityAssignment}
+\include{classmoeoGDominanceObjectiveVectorComparator}
+\include{classmoeoGenerationalReplacement}
+\include{classmoeoHybridLS}
+\include{classmoeoHypervolumeBinaryMetric}
+\include{classmoeoIBEA}
+\include{classmoeoIndicatorBasedFitnessAssignment}
+\include{classmoeoLS}
+\include{classmoeoManhattanDistance}
+\include{classmoeoMetric}
+\include{classmoeoNormalizedDistance}
+\include{classmoeoNormalizedSolutionVsSolutionBinaryMetric}
+\include{classmoeoNSGA}
+\include{classmoeoNSGAII}
+\include{classmoeoObjectiveObjectiveVectorComparator}
+\include{classmoeoObjectiveVector}
+\include{classmoeoObjectiveVectorComparator}
+\include{classmoeoObjectiveVectorTraits}
+\include{classmoeoOneObjectiveComparator}
+\include{classmoeoParetoBasedFitnessAssignment}
+\include{classmoeoParetoObjectiveVectorComparator}
+\include{classmoeoRandomSelect}
+\include{classmoeoRealObjectiveVector}
+\include{classmoeoRealVector}
+\include{classmoeoReplacement}
+\include{classmoeoRouletteSelect}
+\include{classmoeoScalarFitnessAssignment}
+\include{classmoeoSelectFromPopAndArch}
+\include{classmoeoSelectOne}
+\include{classmoeoSharingDiversityAssignment}
+\include{classmoeoSolutionUnaryMetric}
+\include{classmoeoSolutionVsSolutionBinaryMetric}
+\include{classmoeoStochTournamentSelect}
+\include{classmoeoUnaryIndicatorBasedFitnessAssignment}
+\include{classmoeoUnaryMetric}
+\include{classmoeoVector}
+\include{classmoeoVectorUnaryMetric}
+\include{classmoeoVectorVsVectorBinaryMetric}
+\printindex
+\end{document}

trunk/paradiseo-moeo/doc/latex/webpages.tex

@@ -0,0 +1,3 @@
+\section{Related webpages}\label{webpages}
+\begin{itemize}
+\item Paradis\-EO {\tt homepage}\item INRIA GForge {\tt project page}\item {\tt README}\item {\tt NEWS} \end{itemize}