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rename everything from 'do' to 'edo'

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Johann Dreo 2011-01-27 11:23:23 +01:00
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@ -0,0 +1,36 @@
The Evolving Distribution Objects framework (EDO) is a template-based,
ANSI-C++ evolutionary computation library which helps you to write your
own estimation of distribution algorithms.
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2.1 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
Copyright (C) 2010 Thales group
Authors:
N:Johann Dréo
P:nojhan
E:johann.dreo@thalesgroup.com
D:2010-07-01
C:original design and code
N:Caner Candan
P:
E:caner.candan@thalesgroup.com
D:2010-07-01
C:original design and code
As of 2011-01-25, Thales SA disclaims all copyright interest in the Evolving Distribution Objects (EDO) framework.

10
CMakeLists.txt
View file

@ -5,7 +5,7 @@
# Checks cmake version compatibility
CMAKE_MINIMUM_REQUIRED(VERSION 2.6)
PROJECT(DO)
PROJECT(EDO)
SET(PROJECT_VERSION_MAJOR 1)
SET(PROJECT_VERSION_MINOR 0)
@ -31,7 +31,7 @@ INCLUDE_DIRECTORIES(
${EO_INCLUDE_DIRS}
${MO_INCLUDE_DIRS}
${Boost_INCLUDE_DIRS}
/Dev/ometah-0.3/common
# /Dev/ometah-0.3/common
)
######################################################################################
@ -92,8 +92,8 @@ SET(LIBRARY_OUTPUT_PATH ${CMAKE_BINARY_DIR}/lib)
LINK_DIRECTORIES(${LIBRARY_OUTPUT_PATH})
ADD_LIBRARY(do STATIC ${SAMPLE_SRCS})
INSTALL(TARGETS do ARCHIVE DESTINATION lib COMPONENT libraries)
ADD_LIBRARY(edo STATIC ${SAMPLE_SRCS})
INSTALL(TARGETS edo ARCHIVE DESTINATION lib COMPONENT libraries)
######################################################################################
@ -102,7 +102,7 @@ INSTALL(TARGETS do ARCHIVE DESTINATION lib COMPONENT libraries)
### 8) Install pkg-config config file for EO
######################################################################################
INSTALL(FILES do.pc DESTINATION lib/pkgconfig COMPONENT headers)
INSTALL(FILES edo.pc DESTINATION lib/pkgconfig COMPONENT headers)
######################################################################################

503
COPYING
View file

@ -1 +1,502 @@
(c) Thales group, 2010
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51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
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That's all there is to it!

8
README
View file

@ -1,4 +1,4 @@
This package contains the source code for DO.
This package contains the source code for EDO.
# Step 1 - Configuration
------------------------
@ -19,7 +19,7 @@ Note for windows users: if you don't use VisualStudio 9, enter the name of your
# Step 3 - Compilation
----------------------
In the do/build/ directory:
In the edo/build/ directory:
(Unix) > make
(Windows) Open the VisualStudio solution and compile it, compile also the target install.
You can refer to this tutorial if you don't know how to compile a solution: http://paradiseo.gforge.inria.fr/index.php?n=Paradiseo.VisualCTutorial
@ -29,7 +29,7 @@ You can refer to this tutorial if you don't know how to compile a solution: http
---------------------
A toy example is given to test the components. You can run these tests as following.
To define problem-related components for your own problem, please refer to the tutorials available on the website : http://paradiseo.gforge.inria.fr/.
In the do/build/ directory:
In the edo/build/ directory:
(Unix) > ctest
Windows users, please refer to this tutorial: http://paradiseo.gforge.inria.fr/index.php?n=Paradiseo.VisualCTutorial
@ -46,7 +46,7 @@ Windows users, please refer to this tutorial: http://paradiseo.gforge.inria.fr/i
The API-documentation is available in doc/html/index.html
# Things to keep in mind when using DO
# Things to keep in mind when using EDO
----------------------------------------
* By default, the EO random generator's seed is initialized by the number of seconds since the epoch (with time(0)). It is available in the status file dumped at each execution. Please, keep in mind that if you start two run at the same second without modifying the seed, you will get exactly the same results.

2
application/CMakeLists.txt
View file

@ -9,6 +9,6 @@ INCLUDE_DIRECTORIES(
ADD_SUBDIRECTORY(common)
ADD_SUBDIRECTORY(eda_sa)
ADD_SUBDIRECTORY(eda)
ADD_SUBDIRECTORY(sa)
#ADD_SUBDIRECTORY(sa)
######################################################################################

6
application/eda/CMakeLists.txt
View file

@ -15,13 +15,13 @@ FOREACH(file ${RESOURCES})
EXECUTE_PROCESS(
COMMAND ${CMAKE_COMMAND} -E copy_if_different
${CMAKE_CURRENT_SOURCE_DIR}/${file}
${DO_BINARY_DIR}/${file}
${EDO_BINARY_DIR}/${file}
)
ENDFOREACH(file)
FILE(GLOB SOURCES *.cpp)
SET(EXECUTABLE_OUTPUT_PATH ${DO_BINARY_DIR})
SET(EXECUTABLE_OUTPUT_PATH ${EDO_BINARY_DIR})
ADD_EXECUTABLE(${PROJECT_NAME} ${SOURCES})
TARGET_LINK_LIBRARIES(${PROJECT_NAME} do doutils ${EO_LIBRARIES} ${MO_LIBRARIES} ${Boost_LIBRARIES})
TARGET_LINK_LIBRARIES(${PROJECT_NAME} edo edoutils ${EO_LIBRARIES} ${MO_LIBRARIES} ${Boost_LIBRARIES})

51
application/eda/main.cpp
View file

@ -1,3 +1,30 @@
/*
The Evolving Distribution Objects framework (EDO) is a template-based,
ANSI-C++ evolutionary computation library which helps you to write your
own estimation of distribution algorithms.
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2.1 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
Copyright (C) 2010 Thales group
*/
/*
Authors:
Johann Dréo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#include <eo>
#include <mo>
@ -11,14 +38,14 @@
#include <do/make_continue.h>
#include <do/make_checkpoint.h>
#include <do>
#include <edo>
#include "Rosenbrock.h"
#include "Sphere.h"
typedef eoReal<eoMinimizingFitness> EOT;
typedef doNormalMulti< EOT > Distrib;
typedef edoNormalMulti< EOT > Distrib;
int main(int ac, char** av)
@ -45,13 +72,13 @@ int main(int ac, char** av)
eoSelect< EOT >* selector = new eoDetSelect< EOT >( selection_rate );
state.storeFunctor(selector);
doEstimator< Distrib >* estimator = new doEstimatorNormalMulti< EOT >();
edoEstimator< Distrib >* estimator = new edoEstimatorNormalMulti< EOT >();
state.storeFunctor(estimator);
eoSelectOne< EOT >* selectone = new eoDetTournamentSelect< EOT >( 2 );
state.storeFunctor(selectone);
doModifierMass< Distrib >* modifier = new doNormalMultiCenter< EOT >();
edoModifierMass< Distrib >* modifier = new edoNormalMultiCenter< EOT >();
state.storeFunctor(modifier);
eoEvalFunc< EOT >* plainEval = new Rosenbrock< EOT >();
@ -100,7 +127,7 @@ int main(int ac, char** av)
// This is used by doSampler.
//-----------------------------------------------------------------------------
doBounder< EOT >* bounder = new doBounderRng< EOT >(EOT(pop[0].size(), -5),
edoBounder< EOT >* bounder = new edoBounderRng< EOT >(EOT(pop[0].size(), -5),
EOT(pop[0].size(), 5),
*gen);
state.storeFunctor(bounder);
@ -112,7 +139,7 @@ int main(int ac, char** av)
// Prepare sampler class with a specific distribution
//-----------------------------------------------------------------------------
doSampler< Distrib >* sampler = new doSamplerNormalMulti< EOT >( *bounder );
edoSampler< Distrib >* sampler = new edoSamplerNormalMulti< EOT >( *bounder );
state.storeFunctor(sampler);
//-----------------------------------------------------------------------------
@ -166,10 +193,10 @@ int main(int ac, char** av)
// distribution output
//-----------------------------------------------------------------------------
doDummyContinue< Distrib >* dummy_continue = new doDummyContinue< Distrib >();
edoDummyContinue< Distrib >* dummy_continue = new edoDummyContinue< Distrib >();
state.storeFunctor(dummy_continue);
doCheckPoint< Distrib >* distribution_continue = new doCheckPoint< Distrib >( *dummy_continue );
edoCheckPoint< Distrib >* distribution_continue = new edoCheckPoint< Distrib >( *dummy_continue );
state.storeFunctor(distribution_continue);
//-----------------------------------------------------------------------------
@ -216,11 +243,11 @@ int main(int ac, char** av)
// removing as doFileSnapshot does within ctor.
//-----------------------------------------------------------------------------
doPopStat< EOT >* popStat = new doPopStat<EOT>;
edoPopStat< EOT >* popStat = new edoPopStat<EOT>;
state.storeFunctor(popStat);
pop_continue.add(*popStat);
doFileSnapshot* fileSnapshot = new doFileSnapshot("EDA_ResPop");
edoFileSnapshot* fileSnapshot = new edoFileSnapshot("EDA_ResPop");
state.storeFunctor(fileSnapshot);
fileSnapshot->add(*popStat);
pop_continue.add(*fileSnapshot);
@ -232,7 +259,7 @@ int main(int ac, char** av)
// distribution output (after helper)
//-----------------------------------------------------------------------------
doDistribStat< Distrib >* distrib_stat = new doStatNormalMulti< EOT >();
edoDistribStat< Distrib >* distrib_stat = new edoStatNormalMulti< EOT >();
state.storeFunctor(distrib_stat);
distribution_continue->add( *distrib_stat );
@ -254,7 +281,7 @@ int main(int ac, char** av)
// EDA algorithm configuration
//-----------------------------------------------------------------------------
doAlgo< Distrib >* algo = new doEDA< Distrib >
edoAlgo< Distrib >* algo = new edoEDA< Distrib >
(*selector, *estimator, *selectone, *modifier, *sampler,
pop_continue, *distribution_continue,
eval,

6
application/eda_sa/CMakeLists.txt
View file

@ -15,13 +15,13 @@ FOREACH(file ${RESOURCES})
EXECUTE_PROCESS(
COMMAND ${CMAKE_COMMAND} -E copy_if_different
${CMAKE_CURRENT_SOURCE_DIR}/${file}
${DO_BINARY_DIR}/${file}
${EDO_BINARY_DIR}/${file}
)
ENDFOREACH(file)
FILE(GLOB SOURCES *.cpp)
SET(EXECUTABLE_OUTPUT_PATH ${DO_BINARY_DIR})
SET(EXECUTABLE_OUTPUT_PATH ${EDO_BINARY_DIR})
ADD_EXECUTABLE(${PROJECT_NAME} ${SOURCES})
TARGET_LINK_LIBRARIES(${PROJECT_NAME} do doutils ${EO_LIBRARIES} ${MO_LIBRARIES} ${Boost_LIBRARIES})
TARGET_LINK_LIBRARIES(${PROJECT_NAME} edo edoutils ${EO_LIBRARIES} ${MO_LIBRARIES} ${Boost_LIBRARIES})

26
application/eda_sa/main.cpp
View file

@ -11,14 +11,14 @@
#include <do/make_continue.h>
#include <do/make_checkpoint.h>
#include <do>
#include <edo>
#include "Rosenbrock.h"
#include "Sphere.h"
typedef eoReal<eoMinimizingFitness> EOT;
typedef doNormalMulti< EOT > Distrib;
typedef edoNormalMulti< EOT > Distrib;
int main(int ac, char** av)
@ -45,13 +45,13 @@ int main(int ac, char** av)
eoSelect< EOT >* selector = new eoDetSelect< EOT >( selection_rate );
state.storeFunctor(selector);
doEstimator< Distrib >* estimator = new doEstimatorNormalMulti< EOT >();
edoEstimator< Distrib >* estimator = new edoEstimatorNormalMulti< EOT >();
state.storeFunctor(estimator);
eoSelectOne< EOT >* selectone = new eoDetTournamentSelect< EOT >( 2 );
state.storeFunctor(selectone);
doModifierMass< Distrib >* modifier = new doNormalMultiCenter< EOT >();
edoModifierMass< Distrib >* modifier = new edoNormalMultiCenter< EOT >();
state.storeFunctor(modifier);
eoEvalFunc< EOT >* plainEval = new Rosenbrock< EOT >();
@ -100,7 +100,7 @@ int main(int ac, char** av)
// This is used by doSampler.
//-----------------------------------------------------------------------------
doBounder< EOT >* bounder = new doBounderRng< EOT >(EOT(pop[0].size(), -5),
edoBounder< EOT >* bounder = new edoBounderRng< EOT >(EOT(pop[0].size(), -5),
EOT(pop[0].size(), 5),
*gen);
state.storeFunctor(bounder);
@ -112,7 +112,7 @@ int main(int ac, char** av)
// Prepare sampler class with a specific distribution
//-----------------------------------------------------------------------------
doSampler< Distrib >* sampler = new doSamplerNormalMulti< EOT >( *bounder );
edoSampler< Distrib >* sampler = new edoSamplerNormalMulti< EOT >( *bounder );
state.storeFunctor(sampler);
//-----------------------------------------------------------------------------
@ -166,10 +166,10 @@ int main(int ac, char** av)
// distribution output
//-----------------------------------------------------------------------------
doDummyContinue< Distrib >* dummy_continue = new doDummyContinue< Distrib >();
edoDummyContinue< Distrib >* dummy_continue = new edoDummyContinue< Distrib >();
state.storeFunctor(dummy_continue);
doCheckPoint< Distrib >* distribution_continue = new doCheckPoint< Distrib >( *dummy_continue );
edoCheckPoint< Distrib >* distribution_continue = new edoCheckPoint< Distrib >( *dummy_continue );
state.storeFunctor(distribution_continue);
//-----------------------------------------------------------------------------
@ -213,14 +213,14 @@ int main(int ac, char** av)
// population output (after helper)
//
// FIXME: theses objects are instanciate there in order to avoid a folder
// removing as doFileSnapshot does within ctor.
// removing as edoFileSnapshot does within ctor.
//-----------------------------------------------------------------------------
doPopStat< EOT >* popStat = new doPopStat<EOT>;
edoPopStat< EOT >* popStat = new edoPopStat<EOT>;
state.storeFunctor(popStat);
pop_continue.add(*popStat);
doFileSnapshot* fileSnapshot = new doFileSnapshot("EDASA_ResPop");
edoFileSnapshot* fileSnapshot = new edoFileSnapshot("EDASA_ResPop");
state.storeFunctor(fileSnapshot);
fileSnapshot->add(*popStat);
pop_continue.add(*fileSnapshot);
@ -232,7 +232,7 @@ int main(int ac, char** av)
// distribution output (after helper)
//-----------------------------------------------------------------------------
doDistribStat< Distrib >* distrib_stat = new doStatNormalMulti< EOT >();
edoDistribStat< Distrib >* distrib_stat = new edoStatNormalMulti< EOT >();
state.storeFunctor(distrib_stat);
distribution_continue->add( *distrib_stat );
@ -254,7 +254,7 @@ int main(int ac, char** av)
// EDASA algorithm configuration
//-----------------------------------------------------------------------------
doAlgo< Distrib >* algo = new doEDASA< Distrib >
edoAlgo< Distrib >* algo = new edoEDASA< Distrib >
(*selector, *estimator, *selectone, *modifier, *sampler,
pop_continue, *distribution_continue,
eval, *sa_continue, *cooling_schedule,

2
build_gcc_linux_debug
View file

@ -1,6 +1,6 @@
#!/usr/bin/env sh
mkdir debug
mkdir -p debug
cd debug
cmake -DCMAKE_BUILD_TYPE=Debug ..
make

2
build_gcc_linux_release
View file

@ -1,6 +1,6 @@
#!/usr/bin/env sh
mkdir release
mkdir -p release
cd release
cmake ..
make

12
do.pc
View file

@ -1,12 +0,0 @@
# Package Information for pkg-config
prefix=/usr
exec_prefix=${prefix}
libdir=${exec_prefix}/lib
includedir=${prefix}/include/do
Name: Distribution Object
Description: Distribution Object
Version: 1.0
Libs: -L${libdir} -ldo -ldoutils
Cflags: -I${includedir}

2
doc/CMakeLists.txt
View file

@ -22,7 +22,7 @@ IF (DOXYGEN_FOUND)
INSTALL(
DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}
DESTINATION share/do COMPONENT libraries
DESTINATION share/edo COMPONENT libraries
PATTERN "CMakeFiles" EXCLUDE
PATTERN "cmake_install.cmake" EXCLUDE
PATTERN "Makefile" EXCLUDE

12
edo.pc Normal file
View file

@ -0,0 +1,12 @@
# Package Information for pkg-config
prefix=/usr
exec_prefix=${prefix}
libdir=${exec_prefix}/lib
includedir=${prefix}/include/edo
Name: Evolving Distribution Objects
Description: Evolving Distribution Objects
Version: 1.0
Libs: -L${libdir} -ledo -ledoutils
Cflags: -I${includedir}

4
src/CMakeLists.txt
View file

@ -2,8 +2,8 @@
### 1) Set all needed source files for the project
######################################################################################
FILE(GLOB HDRS *.h do)
INSTALL(FILES ${HDRS} DESTINATION include/do COMPONENT headers)
FILE(GLOB HDRS *.h edo)
INSTALL(FILES ${HDRS} DESTINATION include/edo COMPONENT headers)
FILE(GLOB SOURCES *.cpp)

59
src/do
View file

@ -1,59 +0,0 @@
// (c) Thales group, 2010
/*
Authors:
Johann Dreo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _do_
#define _do_
#include "doAlgo.h"
#include "doEDASA.h"
#include "doEDA.h"
#include "doDistrib.h"
#include "doUniform.h"
#include "doNormalMono.h"
#include "doNormalMulti.h"
#include "doEstimator.h"
#include "doEstimatorUniform.h"
#include "doEstimatorNormalMono.h"
#include "doEstimatorNormalMulti.h"
#include "doModifier.h"
#include "doModifierDispersion.h"
#include "doModifierMass.h"
#include "doUniformCenter.h"
#include "doNormalMonoCenter.h"
#include "doNormalMultiCenter.h"
#include "doSampler.h"
#include "doSamplerUniform.h"
#include "doSamplerNormalMono.h"
#include "doSamplerNormalMulti.h"
#include "doVectorBounds.h"
#include "doBounder.h"
#include "doBounderNo.h"
#include "doBounderBound.h"
#include "doBounderRng.h"
#include "doContinue.h"
#include "utils/doCheckPoint.h"
#include "utils/doStat.h"
#include "utils/doStatUniform.h"
#include "utils/doStatNormalMono.h"
#include "utils/doStatNormalMulti.h"
#include "utils/doFileSnapshot.h"
#include "utils/doPopStat.h"
#endif // !_do_
// Local Variables:
// mode: C++
// End:

8
src/do.cpp
View file

@ -1,8 +0,0 @@
// (c) Thales group, 2010
/*
Authors:
Johann Dreo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#include "do"

23
src/doAlgo.h
View file

@ -1,23 +0,0 @@
// (c) Thales group, 2010
/*
Authors:
Johann Dreo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _doAlgo_h
#define _doAlgo_h
#include <eoAlgo.h>
template < typename D >
class doAlgo : public eoAlgo< typename D::EOType >
{
//! Alias for the type
typedef typename D::EOType EOT;
public:
virtual ~doAlgo(){}
};
#endif // !_doAlgo_h

34
src/doBounder.h
View file

@ -1,34 +0,0 @@
// (c) Thales group, 2010
/*
Authors:
Johann Dreo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _doBounder_h
#define _doBounder_h
#include <eoFunctor.h>
template < typename EOT >
class doBounder : public eoUF< EOT&, void >
{
public:
doBounder( EOT min = EOT(1, 0), EOT max = EOT(1, 0) )
: _min(min), _max(max)
{
assert(_min.size() > 0);
assert(_min.size() == _max.size());
}
// virtual void operator()( EOT& ) = 0 (provided by eoUF< A1, R >)
EOT& min(){return _min;}
EOT& max(){return _max;}
private:
EOT _min;
EOT _max;
};
#endif // !_doBounder_h

42
src/doBounderBound.h
View file

@ -1,42 +0,0 @@
// (c) Thales group, 2010
/*
Authors:
Johann Dreo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _doBounderBound_h
#define _doBounderBound_h
#include "doBounder.h"
template < typename EOT >
class doBounderBound : public doBounder< EOT >
{
public:
doBounderBound( EOT min, EOT max )
: doBounder< EOT >( min, max )
{}
void operator()( EOT& x )
{
unsigned int size = x.size();
assert(size > 0);
for (unsigned int d = 0; d < size; ++d) // browse all dimensions
{
if (x[d] < this->min()[d])
{
x[d] = this->min()[d];
continue;
}
if (x[d] > this->max()[d])
{
x[d] = this->max()[d];
}
}
}
};
#endif // !_doBounderBound_h

20
src/doBounderNo.h
View file

@ -1,20 +0,0 @@
// (c) Thales group, 2010
/*
Authors:
Johann Dreo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _doBounderNo_h
#define _doBounderNo_h
#include "doBounder.h"
template < typename EOT >
class doBounderNo : public doBounder< EOT >
{
public:
void operator()( EOT& ) {}
};
#endif // !_doBounderNo_h

42
src/doBounderRng.h
View file

@ -1,42 +0,0 @@
// (c) Thales group, 2010
/*
Authors:
Johann Dreo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _doBounderRng_h
#define _doBounderRng_h
#include "doBounder.h"
template < typename EOT >
class doBounderRng : public doBounder< EOT >
{
public:
doBounderRng( EOT min, EOT max, eoRndGenerator< double > & rng )
: doBounder< EOT >( min, max ), _rng(rng)
{}
void operator()( EOT& x )
{
unsigned int size = x.size();
assert(size > 0);
for (unsigned int d = 0; d < size; ++d) // browse all dimensions
{
// FIXME: attention: les bornes RNG ont les memes bornes quelque soit les dimensions idealement on voudrait avoir des bornes differentes pour chaque dimensions.
if (x[d] < this->min()[d] || x[d] > this->max()[d])
{
x[d] = _rng();
}
}
}
private:
eoRndGenerator< double> & _rng;
};
#endif // !_doBounderRng_h

35
src/doBounderUniform.h
View file

@ -1,35 +0,0 @@
// (c) Thales group, 2010
/*
Authors:
Johann Dreo <johann.dreo@thalesgroup.com>
*/
#ifndef _doBounderUniform_h
#define _doBounderUniform_h
#include "doBounder.h"
template < typename EOT >
class doBounderUniform : public doBounder< EOT >
{
public:
doBounderUniform( EOT min, EOT max )
: doBounder< EOT >( min, max )
{}
void operator()( EOT& sol )
{
unsigned int size = sol.size();
assert(size > 0);
for (unsigned int d = 0; d < size; ++d) {
if ( sol[d] < this->min()[d] || sol[d] > this->max()[d]) {
// use EO's global "rng"
sol[d] = rng.uniform( this->min()[d], this->max()[d] );
}
} // for d in size
}
};
#endif // !_doBounderUniform_h

41
src/doContinue.h
View file

@ -1,41 +0,0 @@
// (c) Thales group, 2010
/*
Authors:
Johann Dreo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _doContinue_h
#define _doContinue_h
#include <eoFunctor.h>
#include <eoPersistent.h>
//! doContinue< EOT > classe fitted to Distribution Object library
template < typename D >
class doContinue : public eoUF< const D&, bool >, public eoPersistent
{
public:
virtual std::string className(void) const { return "doContinue"; }
void readFrom(std::istream&)
{
/* It should be implemented by subclasses ! */
}
void printOn(std::ostream&) const
{
/* It should be implemented by subclasses ! */
}
};
template < typename D >
class doDummyContinue : public doContinue< D >
{
bool operator()(const D&){ return true; }
virtual std::string className() const { return "doDummyContinue"; }
};
#endif // !_doContinue_h

23
src/doDistrib.h
View file

@ -1,23 +0,0 @@
// (c) Thales group, 2010
/*
Authors:
Johann Dreo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _doDistrib_h
#define _doDistrib_h
#include <eoFunctor.h>
template < typename EOT >
class doDistrib : public eoFunctorBase
{
public:
//! Alias for the type
typedef EOT EOType;
virtual ~doDistrib(){}
};
#endif // !_doDistrib_h

23
src/doEstimator.h
View file

@ -1,23 +0,0 @@
// (c) Thales group, 2010
/*
Authors:
Johann Dreo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _doEstimator_h
#define _doEstimator_h
#include <eoPop.h>
#include <eoFunctor.h>
template < typename D >
class doEstimator : public eoUF< eoPop< typename D::EOType >&, D >
{
public:
typedef typename D::EOType EOType;
// virtual D operator() ( eoPop< EOT >& )=0 (provided by eoUF< A1, R >)
};
#endif // !_doEstimator_h

77
src/doEstimatorNormalMono.h
View file

@ -1,77 +0,0 @@
// (c) Thales group, 2010
/*
Authors:
Johann Dreo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _doEstimatorNormalMono_h
#define _doEstimatorNormalMono_h
#include "doEstimator.h"
#include "doNormalMono.h"
template < typename EOT >
class doEstimatorNormalMono : public doEstimator< doNormalMono< EOT > >
{
public:
typedef typename EOT::AtomType AtomType;
class Variance
{
public:
Variance() : _sumvar(0){}
void update(AtomType v)
{
_n++;
AtomType d = v - _mean;
_mean += 1 / _n * d;
_sumvar += (_n - 1) / _n * d * d;
}
AtomType get_mean() const {return _mean;}
AtomType get_var() const {return _sumvar / (_n - 1);}
AtomType get_std() const {return sqrt( get_var() );}
private:
AtomType _n;
AtomType _mean;
AtomType _sumvar;
};
public:
doNormalMono< EOT > operator()(eoPop<EOT>& pop)
{
unsigned int popsize = pop.size();
assert(popsize > 0);
unsigned int dimsize = pop[0].size();
assert(dimsize > 0);
std::vector< Variance > var( dimsize );
for (unsigned int i = 0; i < popsize; ++i)
{
for (unsigned int d = 0; d < dimsize; ++d)
{
var[d].update( pop[i][d] );
}
}
EOT mean( dimsize );
EOT variance( dimsize );
for (unsigned int d = 0; d < dimsize; ++d)
{
mean[d] = var[d].get_mean();
variance[d] = var[d].get_var();
}
return doNormalMono< EOT >( mean, variance );
}
};
#endif // !_doEstimatorNormalMono_h

51
src/doEstimatorUniform.h
View file

@ -1,51 +0,0 @@
// (c) Thales group, 2010
/*
Authors:
Johann Dreo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _doEstimatorUniform_h
#define _doEstimatorUniform_h
#include "doEstimator.h"
#include "doUniform.h"
// TODO: calcule de la moyenne + covariance dans une classe derivee
template < typename EOT >
class doEstimatorUniform : public doEstimator< doUniform< EOT > >
{
public:
doUniform< EOT > operator()(eoPop<EOT>& pop)
{
unsigned int size = pop.size();
assert(size > 0);
EOT min = pop[0];
EOT max = pop[0];
for (unsigned int i = 1; i < size; ++i)
{
unsigned int size = pop[i].size();
assert(size > 0);
// possibilité d'utiliser std::min_element et std::max_element mais exige 2 pass au lieu d'1.
for (unsigned int d = 0; d < size; ++d)
{
if (pop[i][d] < min[d])
min[d] = pop[i][d];
if (pop[i][d] > max[d])
max[d] = pop[i][d];
}
}
return doUniform< EOT >(min, max);
}
};
#endif // !_doEstimatorUniform_h

20
src/doModifier.h
View file

@ -1,20 +0,0 @@
// (c) Thales group, 2010
/*
Authors:
Johann Dreo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _doModifier_h
#define _doModifier_h
template < typename D >
class doModifier
{
public:
virtual ~doModifier(){}
typedef typename D::EOType EOType;
};
#endif // !_doModifier_h

23
src/doModifierDispersion.h
View file

@ -1,23 +0,0 @@
// (c) Thales group, 2010
/*
Authors:
Johann Dreo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _doModifierDispersion_h
#define _doModifierDispersion_h
#include <eoPop.h>
#include <eoFunctor.h>
#include "doModifier.h"
template < typename D >
class doModifierDispersion : public doModifier< D >, public eoBF< D&, eoPop< typename D::EOType >&, void >
{
public:
// virtual void operator() ( D&, eoPop< D::EOType >& )=0 (provided by eoBF< A1, A2, R >)
};
#endif // !_doModifierDispersion_h

24
src/doModifierMass.h
View file

@ -1,24 +0,0 @@
// (c) Thales group, 2010
/*
Authors:
Johann Dreo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _doModifierMass_h
#define _doModifierMass_h
#include <eoFunctor.h>
#include "doModifier.h"
template < typename D >
class doModifierMass : public doModifier< D >, public eoBF< D&, typename D::EOType&, void >
{
public:
//typedef typename D::EOType::AtomType AtomType; // does not work !!!
// virtual void operator() ( D&, D::EOType& )=0 (provided by eoBF< A1, A2, R >)
};
#endif // !_doModifierMass_h

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src/doNormalMono.h
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// (c) Thales group, 2010
/*
Authors:
Johann Dreo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _doNormalMono_h
#define _doNormalMono_h
#include "doDistrib.h"
template < typename EOT >
class doNormalMono : public doDistrib< EOT >
{
public:
doNormalMono( const EOT& mean, const EOT& variance )
: _mean(mean), _variance(variance)
{
assert(_mean.size() > 0);
assert(_mean.size() == _variance.size());
}
unsigned int size()
{
assert(_mean.size() == _variance.size());
return _mean.size();
}
EOT mean(){return _mean;}
EOT variance(){return _variance;}
private:
EOT _mean;
EOT _variance;
};
#endif // !_doNormalMono_h

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src/doNormalMonoCenter.h
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// (c) Thales group, 2010
/*
Authors:
Johann Dreo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _doNormalMonoCenter_h
#define _doNormalMonoCenter_h
#include "doModifierMass.h"
#include "doNormalMono.h"
template < typename EOT >
class doNormalMonoCenter : public doModifierMass< doNormalMono< EOT > >
{
public:
typedef typename EOT::AtomType AtomType;
void operator() ( doNormalMono< EOT >& distrib, EOT& mass )
{
distrib.mean() = mass;
}
};
#endif // !_doNormalMonoCenter_h

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src/doNormalMultiCenter.h
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// (c) Thales group, 2010
/*
Authors:
Johann Dreo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _doNormalMultiCenter_h
#define _doNormalMultiCenter_h
#include "doModifierMass.h"
#include "doNormalMulti.h"
template < typename EOT >
class doNormalMultiCenter : public doModifierMass< doNormalMulti< EOT > >
{
public:
typedef typename EOT::AtomType AtomType;
void operator() ( doNormalMulti< EOT >& distrib, EOT& mass )
{
ublas::vector< AtomType > mean( distrib.size() );
std::copy( mass.begin(), mass.end(), mean.begin() );
distrib.mean() = mean;
}
};
#endif // !_doNormalMultiCenter_h

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src/doSampler.h
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// (c) Thales group, 2010
/*
Authors:
Johann Dreo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _doSampler_h
#define _doSampler_h
#include <eoFunctor.h>
#include "doBounder.h"
#include "doBounderNo.h"
template < typename D >
class doSampler : public eoUF< D&, typename D::EOType >
{
public:
typedef typename D::EOType EOType;
doSampler(doBounder< EOType > & bounder)
: /*_dummy_bounder(),*/ _bounder(bounder)
{}
/*
doSampler()
: _dummy_bounder(), _bounder( _dummy_bounder )
{}
*/
// virtual EOType operator()( D& ) = 0 (provided by eoUF< A1, R >)
virtual EOType sample( D& ) = 0;
EOType operator()( D& distrib )
{
unsigned int size = distrib.size();
assert(size > 0);
//-------------------------------------------------------------
// Point we want to sample to get higher a set of points
// (coordinates in n dimension)
// x = {x1, x2, ..., xn}
// the sample method is implemented in the derivated class
//-------------------------------------------------------------
EOType solution(sample(distrib));
//-------------------------------------------------------------
//-------------------------------------------------------------
// Now we are bounding the distribution thanks to min and max
// parameters.
//-------------------------------------------------------------
_bounder(solution);
//-------------------------------------------------------------
return solution;
}
private:
//doBounderNo<EOType> _dummy_bounder;
//! Bounder functor
doBounder< EOType > & _bounder;
};
#endif // !_doSampler_h

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// (c) Thales group, 2010
/*
Authors:
Johann Dreo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _doSamplerNormalMono_h
#define _doSamplerNormalMono_h
#include <utils/eoRNG.h>
#include "doSampler.h"
#include "doNormalMono.h"
#include "doBounder.h"
/**
* doSamplerNormalMono
* This class uses the NormalMono distribution parameters (bounds) to return
* a random position used for population sampling.
*/
template < typename EOT >
class doSamplerNormalMono : public doSampler< doNormalMono< EOT > >
{
public:
typedef typename EOT::AtomType AtomType;
doSamplerNormalMono( doBounder< EOT > & bounder )
: doSampler< doNormalMono< EOT > >( bounder )
{}
EOT sample( doNormalMono< EOT >& distrib )
{
unsigned int size = distrib.size();
assert(size > 0);
//-------------------------------------------------------------
// Point we want to sample to get higher a set of points
// (coordinates in n dimension)
// x = {x1, x2, ..., xn}
//-------------------------------------------------------------
EOT solution;
//-------------------------------------------------------------
//-------------------------------------------------------------
// Sampling all dimensions
//-------------------------------------------------------------
for (unsigned int i = 0; i < size; ++i)
{
AtomType mean = distrib.mean()[i];
AtomType variance = distrib.variance()[i];
AtomType random = rng.normal(mean, variance);
assert(variance >= 0);
solution.push_back(random);
}
//-------------------------------------------------------------
return solution;
}
};
#endif // !_doSamplerNormalMono_h

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// (c) Thales group, 2010
/*
Authors:
Johann Dreo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _doSamplerUniform_h
#define _doSamplerUniform_h
#include <utils/eoRNG.h>
#include "doSampler.h"
#include "doUniform.h"
/**
* doSamplerUniform
* This class uses the Uniform distribution parameters (bounds) to return
* a random position used for population sampling.
*/
template < typename EOT, class D=doUniform<EOT> > // FIXME: D template name is there really used ?!?
class doSamplerUniform : public doSampler< doUniform< EOT > >
{
public:
typedef D Distrib;
doSamplerUniform(doBounder< EOT > & bounder)
: doSampler< doUniform<EOT> >(bounder) // FIXME: Why D is not used here ?
{}
/*
doSamplerUniform()
: doSampler< doUniform<EOT> >()
{}
*/
EOT sample( doUniform< EOT >& distrib )
{
unsigned int size = distrib.size();
assert(size > 0);
//-------------------------------------------------------------
// Point we want to sample to get higher a set of points
// (coordinates in n dimension)
// x = {x1, x2, ..., xn}
//-------------------------------------------------------------
EOT solution;
//-------------------------------------------------------------
//-------------------------------------------------------------
// Sampling all dimensions
//-------------------------------------------------------------
for (unsigned int i = 0; i < size; ++i)
{
double min = distrib.min()[i];
double max = distrib.max()[i];
double random = rng.uniform(min, max);
assert(min <= random && random <= max);
solution.push_back(random);
}
//-------------------------------------------------------------
return solution;
}
};
#endif // !_doSamplerUniform_h

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src/doUniform.h
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// (c) Thales group, 2010
/*
Authors:
Johann Dreo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _doUniform_h
#define _doUniform_h
#include "doDistrib.h"
#include "doVectorBounds.h"
template < typename EOT >
class doUniform : public doDistrib< EOT >, public doVectorBounds< EOT >
{
public:
doUniform(EOT min, EOT max)
: doVectorBounds< EOT >(min, max)
{}
};
#endif // !_doUniform_h

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src/doUniformCenter.h
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// (c) Thales group, 2010
/*
Authors:
Johann Dreo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _doUniformCenter_h
#define _doUniformCenter_h
#include "doModifierMass.h"
#include "doUniform.h"
template < typename EOT >
class doUniformCenter : public doModifierMass< doUniform< EOT > >
{
public:
typedef typename EOT::AtomType AtomType;
void operator() ( doUniform< EOT >& distrib, EOT& mass )
{
for (unsigned int i = 0, n = mass.size(); i < n; ++i)
{
AtomType& min = distrib.min()[i];
AtomType& max = distrib.max()[i];
AtomType range = (max - min) / 2;
min = mass[i] - range;
max = mass[i] + range;
}
}
};
#endif // !_doUniformCenter_h

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src/doVectorBounds.h
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// (c) Thales group, 2010
/*
Authors:
Johann Dreo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _doVectorBounds_h
#define _doVectorBounds_h
template < typename EOT >
class doVectorBounds
{
public:
doVectorBounds(EOT min, EOT max)
: _min(min), _max(max)
{
assert(_min.size() > 0);
assert(_min.size() == _max.size());
}
EOT min(){return _min;}
EOT max(){return _max;}
unsigned int size()
{
assert(_min.size() == _max.size());
return _min.size();
}
private:
EOT _min;
EOT _max;
};
#endif // !_doVectorBounds_h

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src/edo Normal file
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/*
The Evolving Distribution Objects framework (EDO) is a template-based,
ANSI-C++ evolutionary computation library which helps you to write your
own estimation of distribution algorithms.
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2.1 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
Copyright (C) 2010 Thales group
*/
/*
Authors:
Johann Dréo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _edo_
#define _edo_
#include "edoAlgo.h"
#include "edoEDASA.h"
#include "edoEDA.h"
#include "edoDistrib.h"
#include "edoUniform.h"
#include "edoNormalMono.h"
#include "edoNormalMulti.h"
#include "edoEstimator.h"
#include "edoEstimatorUniform.h"
#include "edoEstimatorNormalMono.h"
#include "edoEstimatorNormalMulti.h"
#include "edoModifier.h"
#include "edoModifierDispersion.h"
#include "edoModifierMass.h"
#include "edoUniformCenter.h"
#include "edoNormalMonoCenter.h"
#include "edoNormalMultiCenter.h"
#include "edoSampler.h"
#include "edoSamplerUniform.h"
#include "edoSamplerNormalMono.h"
#include "edoSamplerNormalMulti.h"
#include "edoVectorBounds.h"
#include "edoBounder.h"
#include "edoBounderNo.h"
#include "edoBounderBound.h"
#include "edoBounderRng.h"
#include "edoContinue.h"
#include "utils/edoCheckPoint.h"
#include "utils/edoStat.h"
#include "utils/edoStatUniform.h"
#include "utils/edoStatNormalMono.h"
#include "utils/edoStatNormalMulti.h"
#include "utils/edoFileSnapshot.h"
#include "utils/edoPopStat.h"
#endif // !_edo_
// Local Variables:
// mode: C++
// End:

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/*
The Evolving Distribution Objects framework (EDO) is a template-based,
ANSI-C++ evolutionary computation library which helps you to write your
own estimation of distribution algorithms.
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2.1 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
Copyright (C) 2010 Thales group
*/
/*
Authors:
Caner Candan <caner.candan@thalesgroup.com>
*/
#include "edo"

44
src/edoAlgo.h Normal file
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/*
The Evolving Distribution Objects framework (EDO) is a template-based,
ANSI-C++ evolutionary computation library which helps you to write your
own estimation of distribution algorithms.
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2.1 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
Copyright (C) 2010 Thales group
*/
/*
Authors:
Johann Dréo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _edoAlgo_h
#define _edoAlgo_h
#include <eoAlgo.h>
template < typename D >
class edoAlgo : public eoAlgo< typename D::EOType >
{
//! Alias for the type
typedef typename D::EOType EOT;
public:
virtual ~edoAlgo(){}
};
#endif // !_edoAlgo_h

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/*
The Evolving Distribution Objects framework (EDO) is a template-based,
ANSI-C++ evolutionary computation library which helps you to write your
own estimation of distribution algorithms.
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2.1 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
Copyright (C) 2010 Thales group
*/
/*
Authors:
Johann Dréo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _edoBounder_h
#define _edoBounder_h
#include <eoFunctor.h>
template < typename EOT >
class edoBounder : public eoUF< EOT&, void >
{
public:
edoBounder( EOT min = EOT(1, 0), EOT max = EOT(1, 0) )
: _min(min), _max(max)
{
assert(_min.size() > 0);
assert(_min.size() == _max.size());
}
// virtual void operator()( EOT& ) = 0 (provided by eoUF< A1, R >)
EOT& min(){return _min;}
EOT& max(){return _max;}
private:
EOT _min;
EOT _max;
};
#endif // !_edoBounder_h

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/*
The Evolving Distribution Objects framework (EDO) is a template-based,
ANSI-C++ evolutionary computation library which helps you to write your
own estimation of distribution algorithms.
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2.1 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
Copyright (C) 2010 Thales group
*/
/*
Authors:
Johann Dréo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _edoBounderBound_h
#define _edoBounderBound_h
#include "edoBounder.h"
template < typename EOT >
class edoBounderBound : public edoBounder< EOT >
{
public:
edoBounderBound( EOT min, EOT max )
: edoBounder< EOT >( min, max )
{}
void operator()( EOT& x )
{
unsigned int size = x.size();
assert(size > 0);
for (unsigned int d = 0; d < size; ++d) // browse all dimensions
{
if (x[d] < this->min()[d])
{
x[d] = this->min()[d];
continue;
}
if (x[d] > this->max()[d])
{
x[d] = this->max()[d];
}
}
}
};
#endif // !_edoBounderBound_h

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/*
The Evolving Distribution Objects framework (EDO) is a template-based,
ANSI-C++ evolutionary computation library which helps you to write your
own estimation of distribution algorithms.
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2.1 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
Copyright (C) 2010 Thales group
*/
/*
Authors:
Johann Dréo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _edoBounderNo_h
#define _edoBounderNo_h
#include "edoBounder.h"
template < typename EOT >
class edoBounderNo : public edoBounder< EOT >
{
public:
void operator()( EOT& ) {}
};
#endif // !_edoBounderNo_h

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/*
The Evolving Distribution Objects framework (EDO) is a template-based,
ANSI-C++ evolutionary computation library which helps you to write your
own estimation of distribution algorithms.
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2.1 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
Copyright (C) 2010 Thales group
*/
/*
Authors:
Johann Dréo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _edoBounderRng_h
#define _edoBounderRng_h
#include "edoBounder.h"
template < typename EOT >
class edoBounderRng : public edoBounder< EOT >
{
public:
edoBounderRng( EOT min, EOT max, eoRndGenerator< double > & rng )
: edoBounder< EOT >( min, max ), _rng(rng)
{}
void operator()( EOT& x )
{
unsigned int size = x.size();
assert(size > 0);
for (unsigned int d = 0; d < size; ++d) // browse all dimensions
{
// FIXME: attention: les bornes RNG ont les memes bornes quelque soit les dimensions idealement on voudrait avoir des bornes differentes pour chaque dimensions.
if (x[d] < this->min()[d] || x[d] > this->max()[d])
{
x[d] = _rng();
}
}
}
private:
eoRndGenerator< double> & _rng;
};
#endif // !_edoBounderRng_h

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/*
The Evolving Distribution Objects framework (EDO) is a template-based,
ANSI-C++ evolutionary computation library which helps you to write your
own estimation of distribution algorithms.
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2.1 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
Copyright (C) 2010 Thales group
*/
/*
Authors:
Johann Dréo <johann.dreo@thalesgroup.com>
*/
#ifndef _edoBounderUniform_h
#define _edoBounderUniform_h
#include "edoBounder.h"
template < typename EOT >
class edoBounderUniform : public edoBounder< EOT >
{
public:
edoBounderUniform( EOT min, EOT max )
: edoBounder< EOT >( min, max )
{}
void operator()( EOT& sol )
{
unsigned int size = sol.size();
assert(size > 0);
for (unsigned int d = 0; d < size; ++d) {
if ( sol[d] < this->min()[d] || sol[d] > this->max()[d]) {
// use EO's global "rng"
sol[d] = rng.uniform( this->min()[d], this->max()[d] );
}
} // for d in size
}
};
#endif // !_edoBounderUniform_h

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/*
The Evolving Distribution Objects framework (EDO) is a template-based,
ANSI-C++ evolutionary computation library which helps you to write your
own estimation of distribution algorithms.
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2.1 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
Copyright (C) 2010 Thales group
*/
/*
Authors:
Johann Dréo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _doContinue_h
#define _doContinue_h
#include <eoFunctor.h>
#include <eoPersistent.h>
//! edoContinue< EOT > classe fitted to Distribution Object library
template < typename D >
class edoContinue : public eoUF< const D&, bool >, public eoPersistent
{
public:
virtual std::string className(void) const { return "edoContinue"; }
void readFrom(std::istream&)
{
/* It should be implemented by subclasses ! */
}
void printOn(std::ostream&) const
{
/* It should be implemented by subclasses ! */
}
};
template < typename D >
class edoDummyContinue : public edoContinue< D >
{
bool operator()(const D&){ return true; }
virtual std::string className() const { return "edoDummyContinue"; }
};
#endif // !_edoContinue_h

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/*
The Evolving Distribution Objects framework (EDO) is a template-based,
ANSI-C++ evolutionary computation library which helps you to write your
own estimation of distribution algorithms.
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2.1 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
Copyright (C) 2010 Thales group
*/
/*
Authors:
Johann Dréo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _edoDistrib_h
#define _edoDistrib_h
#include <eoFunctor.h>
template < typename EOT >
class edoDistrib : public eoFunctorBase
{
public:
//! Alias for the type
typedef EOT EOType;
virtual ~edoDistrib(){}
};
#endif // !_edoDistrib_h

66
src/doEDA.h → src/edoEDA.h
View file

@ -1,26 +1,46 @@
// (c) Thales group, 2010
/*
Authors:
Johann Dreo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
The Evolving Distribution Objects framework (EDO) is a template-based,
ANSI-C++ evolutionary computation library which helps you to write your
own estimation of distribution algorithms.
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2.1 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
Copyright (C) 2010 Thales group
*/
/*
Authors:
Johann Dréo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _doEDA_h
#define _doEDA_h
#ifndef _edoEDA_h
#define _edoEDA_h
#include <eo>
#include <mo>
#include <utils/eoRNG.h>
#include "doAlgo.h"
#include "doEstimator.h"
#include "doModifierMass.h"
#include "doSampler.h"
#include "doContinue.h"
#include "edoAlgo.h"
#include "edoEstimator.h"
#include "edoModifierMass.h"
#include "edoSampler.h"
#include "edoContinue.h"
template < typename D >
class doEDA : public doAlgo< D >
class edoEDA : public edoAlgo< D >
{
public:
//! Alias for the type EOT
@ -34,7 +54,7 @@ public:
public:
//! doEDA constructor
//! edoEDA constructor
/*!
All the boxes used by a EDASA need to be given.
@ -51,13 +71,13 @@ public:
\param initial_temperature The initial temperature.
\param replacor Population replacor
*/
doEDA (eoSelect< EOT > & selector,
doEstimator< D > & estimator,
edoEDA (eoSelect< EOT > & selector,
edoEstimator< D > & estimator,
eoSelectOne< EOT > & selectone,
doModifierMass< D > & modifier,
doSampler< D > & sampler,
edoModifierMass< D > & modifier,
edoSampler< D > & sampler,
eoContinue< EOT > & pop_continue,
doContinue< D > & distribution_continue,
edoContinue< D > & distribution_continue,
eoEvalFunc < EOT > & evaluation,
//moContinuator< moDummyNeighbor<EOT> > & sa_continue,
//moCoolingSchedule<EOT> & cooling_schedule,
@ -216,22 +236,22 @@ private:
eoSelect < EOT > & _selector;
//! A EOT estimator. It is going to estimate distribution parameters.
doEstimator< D > & _estimator;
edoEstimator< D > & _estimator;
//! SelectOne
eoSelectOne< EOT > & _selectone;
//! A D modifier
doModifierMass< D > & _modifier;
edoModifierMass< D > & _modifier;
//! A D sampler
doSampler< D > & _sampler;
edoSampler< D > & _sampler;
//! A EOT population continuator
eoContinue < EOT > & _pop_continue;
//! A D continuator
doContinue < D > & _distribution_continue;
edoContinue < D > & _distribution_continue;
//! A full evaluation function.
eoEvalFunc < EOT > & _evaluation;
@ -249,4 +269,4 @@ private:
eoReplacement < EOT > & _replacor;
};
#endif // !_doEDA_h
#endif // !_edoEDA_h

66
src/doEDASA.h → src/edoEDASA.h
View file

@ -1,26 +1,46 @@
// (c) Thales group, 2010
/*
Authors:
Johann Dreo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
The Evolving Distribution Objects framework (EDO) is a template-based,
ANSI-C++ evolutionary computation library which helps you to write your
own estimation of distribution algorithms.
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2.1 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
Copyright (C) 2010 Thales group
*/
/*
Authors:
Johann Dréo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _doEDASA_h
#define _doEDASA_h
#ifndef _edoEDASA_h
#define _edoEDASA_h
#include <eo>
#include <mo>
#include <utils/eoRNG.h>
#include "doAlgo.h"
#include "doEstimator.h"
#include "doModifierMass.h"
#include "doSampler.h"
#include "doContinue.h"
#include "edoAlgo.h"
#include "edoEstimator.h"
#include "edoModifierMass.h"
#include "edoSampler.h"
#include "edoContinue.h"
template < typename D >
class doEDASA : public doAlgo< D >
class edoEDASA : public edoAlgo< D >
{
public:
//! Alias for the type EOT
@ -34,7 +54,7 @@ public:
public:
//! doEDASA constructor
//! edoEDASA constructor
/*!
All the boxes used by a EDASA need to be given.
@ -51,13 +71,13 @@ public:
\param initial_temperature The initial temperature.
\param replacor Population replacor
*/
doEDASA (eoSelect< EOT > & selector,
doEstimator< D > & estimator,
edoEDASA (eoSelect< EOT > & selector,
edoEstimator< D > & estimator,
eoSelectOne< EOT > & selectone,
doModifierMass< D > & modifier,
doSampler< D > & sampler,
edoModifierMass< D > & modifier,
edoSampler< D > & sampler,
eoContinue< EOT > & pop_continue,
doContinue< D > & distribution_continue,
edoContinue< D > & distribution_continue,
eoEvalFunc < EOT > & evaluation,
moContinuator< moDummyNeighbor<EOT> > & sa_continue,
moCoolingSchedule<EOT> & cooling_schedule,
@ -214,22 +234,22 @@ private:
eoSelect < EOT > & _selector;
//! A EOT estimator. It is going to estimate distribution parameters.
doEstimator< D > & _estimator;
edoEstimator< D > & _estimator;
//! SelectOne
eoSelectOne< EOT > & _selectone;
//! A D modifier
doModifierMass< D > & _modifier;
edoModifierMass< D > & _modifier;
//! A D sampler
doSampler< D > & _sampler;
edoSampler< D > & _sampler;
//! A EOT population continuator
eoContinue < EOT > & _pop_continue;
//! A D continuator
doContinue < D > & _distribution_continue;
edoContinue < D > & _distribution_continue;
//! A full evaluation function.
eoEvalFunc < EOT > & _evaluation;
@ -247,4 +267,4 @@ private:
eoReplacement < EOT > & _replacor;
};
#endif // !_doEDASA_h
#endif // !_edoEDASA_h

43
src/edoEstimator.h Normal file
View file

@ -0,0 +1,43 @@
/*
The Evolving Distribution Objects framework (EDO) is a template-based,
ANSI-C++ evolutionary computation library which helps you to write your
own estimation of distribution algorithms.
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2.1 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
Copyright (C) 2010 Thales group
*/
/*
Authors:
Johann Dréo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _edoEstimator_h
#define _edoEstimator_h
#include <eoPop.h>
#include <eoFunctor.h>
template < typename D >
class edoEstimator : public eoUF< eoPop< typename D::EOType >&, D >
{
public:
typedef typename D::EOType EOType;
// virtual D operator() ( eoPop< EOT >& )=0 (provided by eoUF< A1, R >)
};
#endif // !_edoEstimator_h

97
src/edoEstimatorNormalMono.h Normal file
View file

@ -0,0 +1,97 @@
/*
The Evolving Distribution Objects framework (EDO) is a template-based,
ANSI-C++ evolutionary computation library which helps you to write your
own estimation of distribution algorithms.
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2.1 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
Copyright (C) 2010 Thales group
*/
/*
Authors:
Johann Dréo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _edoEstimatorNormalMono_h
#define _edoEstimatorNormalMono_h
#include "edoEstimator.h"
#include "edoNormalMono.h"
template < typename EOT >
class edoEstimatorNormalMono : public edoEstimator< edoNormalMono< EOT > >
{
public:
typedef typename EOT::AtomType AtomType;
class Variance
{
public:
Variance() : _sumvar(0){}
void update(AtomType v)
{
_n++;
AtomType d = v - _mean;
_mean += 1 / _n * d;
_sumvar += (_n - 1) / _n * d * d;
}
AtomType get_mean() const {return _mean;}
AtomType get_var() const {return _sumvar / (_n - 1);}
AtomType get_std() const {return sqrt( get_var() );}
private:
AtomType _n;
AtomType _mean;
AtomType _sumvar;
};
public:
edoNormalMono< EOT > operator()(eoPop<EOT>& pop)
{
unsigned int popsize = pop.size();
assert(popsize > 0);
unsigned int dimsize = pop[0].size();
assert(dimsize > 0);
std::vector< Variance > var( dimsize );
for (unsigned int i = 0; i < popsize; ++i)
{
for (unsigned int d = 0; d < dimsize; ++d)
{
var[d].update( pop[i][d] );
}
}
EOT mean( dimsize );
EOT variance( dimsize );
for (unsigned int d = 0; d < dimsize; ++d)
{
mean[d] = var[d].get_mean();
variance[d] = var[d].get_var();
}
return edoNormalMono< EOT >( mean, variance );
}
};
#endif // !_edoEstimatorNormalMono_h

45
src/doEstimatorNormalMulti.h → src/edoEstimatorNormalMulti.h
View file

@ -1,18 +1,39 @@
// (c) Thales group, 2010
/*
Authors:
Johann Dreo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
The Evolving Distribution Objects framework (EDO) is a template-based,
ANSI-C++ evolutionary computation library which helps you to write your
own estimation of distribution algorithms.
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2.1 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
Copyright (C) 2010 Thales group
*/
/*
Authors:
Johann Dréo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _doEstimatorNormalMulti_h
#define _doEstimatorNormalMulti_h
#include "doEstimator.h"
#include "doNormalMulti.h"
#ifndef _edoEstimatorNormalMulti_h
#define _edoEstimatorNormalMulti_h
#include "edoEstimator.h"
#include "edoNormalMulti.h"
template < typename EOT >
class doEstimatorNormalMulti : public doEstimator< doNormalMulti< EOT > >
class edoEstimatorNormalMulti : public edoEstimator< edoNormalMulti< EOT > >
{
public:
class CovMatrix
@ -112,7 +133,7 @@ public:
public:
typedef typename EOT::AtomType AtomType;
doNormalMulti< EOT > operator()(eoPop<EOT>& pop)
edoNormalMulti< EOT > operator()(eoPop<EOT>& pop)
{
unsigned int popsize = pop.size();
assert(popsize > 0);
@ -122,8 +143,8 @@ public:
CovMatrix cov( pop );
return doNormalMulti< EOT >( cov.get_mean(), cov.get_varcovar() );
return edoNormalMulti< EOT >( cov.get_mean(), cov.get_varcovar() );
}
};
#endif // !_doEstimatorNormalMulti_h
#endif // !_edoEstimatorNormalMulti_h

71
src/edoEstimatorUniform.h Normal file
View file

@ -0,0 +1,71 @@
/*
The Evolving Distribution Objects framework (EDO) is a template-based,
ANSI-C++ evolutionary computation library which helps you to write your
own estimation of distribution algorithms.
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2.1 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
Copyright (C) 2010 Thales group
*/
/*
Authors:
Johann Dréo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _edoEstimatorUniform_h
#define _edoEstimatorUniform_h
#include "edoEstimator.h"
#include "edoUniform.h"
// TODO: calcule de la moyenne + covariance dans une classe derivee
template < typename EOT >
class edoEstimatorUniform : public edoEstimator< edoUniform< EOT > >
{
public:
edoUniform< EOT > operator()(eoPop<EOT>& pop)
{
unsigned int size = pop.size();
assert(size > 0);
EOT min = pop[0];
EOT max = pop[0];
for (unsigned int i = 1; i < size; ++i)
{
unsigned int size = pop[i].size();
assert(size > 0);
// possibilité d'utiliser std::min_element et std::max_element mais exige 2 pass au lieu d'1.
for (unsigned int d = 0; d < size; ++d)
{
if (pop[i][d] < min[d])
min[d] = pop[i][d];
if (pop[i][d] > max[d])
max[d] = pop[i][d];
}
}
return edoUniform< EOT >(min, max);
}
};
#endif // !_edoEstimatorUniform_h

41
src/edoModifier.h Normal file
View file

@ -0,0 +1,41 @@
/*
The Evolving Distribution Objects framework (EDO) is a template-based,
ANSI-C++ evolutionary computation library which helps you to write your
own estimation of distribution algorithms.
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2.1 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
Copyright (C) 2010 Thales group
*/
/*
Authors:
Johann Dréo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _edoModifier_h
#define _edoModifier_h
template < typename D >
class edoModifier
{
public:
virtual ~edoModifier(){}
typedef typename D::EOType EOType;
};
#endif // !_edoModifier_h

43
src/edoModifierDispersion.h Normal file
View file

@ -0,0 +1,43 @@
/*
The Evolving Distribution Objects framework (EDO) is a template-based,
ANSI-C++ evolutionary computation library which helps you to write your
own estimation of distribution algorithms.
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2.1 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
Copyright (C) 2010 Thales group
*/
/*
Authors:
Johann Dréo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _edoModifierDispersion_h
#define _edoModifierDispersion_h
#include <eoPop.h>
#include <eoFunctor.h>
#include "edoModifier.h"
template < typename D >
class edoModifierDispersion : public edoModifier< D >, public eoBF< D&, eoPop< typename D::EOType >&, void >
{
public:
// virtual void operator() ( D&, eoPop< D::EOType >& )=0 (provided by eoBF< A1, A2, R >)
};
#endif // !_edoModifierDispersion_h

45
src/edoModifierMass.h Normal file
View file

@ -0,0 +1,45 @@
/*
The Evolving Distribution Objects framework (EDO) is a template-based,
ANSI-C++ evolutionary computation library which helps you to write your
own estimation of distribution algorithms.
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2.1 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
Copyright (C) 2010 Thales group
*/
/*
Authors:
Johann Dréo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _edoModifierMass_h
#define _edoModifierMass_h
#include <eoFunctor.h>
#include "edoModifier.h"
template < typename D >
class edoModifierMass : public edoModifier< D >, public eoBF< D&, typename D::EOType&, void >
{
public:
//typedef typename D::EOType::AtomType AtomType; // does not work !!!
// virtual void operator() ( D&, D::EOType& )=0 (provided by eoBF< A1, A2, R >)
};
#endif // !_edoModifierMass_h

58
src/edoNormalMono.h Normal file
View file

@ -0,0 +1,58 @@
/*
The Evolving Distribution Objects framework (EDO) is a template-based,
ANSI-C++ evolutionary computation library which helps you to write your
own estimation of distribution algorithms.
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2.1 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
Copyright (C) 2010 Thales group
*/
/*
Authors:
Johann Dréo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _edoNormalMono_h
#define _edoNormalMono_h
#include "edoDistrib.h"
template < typename EOT >
class edoNormalMono : public edoDistrib< EOT >
{
public:
edoNormalMono( const EOT& mean, const EOT& variance )
: _mean(mean), _variance(variance)
{
assert(_mean.size() > 0);
assert(_mean.size() == _variance.size());
}
unsigned int size()
{
assert(_mean.size() == _variance.size());
return _mean.size();
}
EOT mean(){return _mean;}
EOT variance(){return _variance;}
private:
EOT _mean;
EOT _variance;
};
#endif // !_edoNormalMono_h

47
src/edoNormalMonoCenter.h Normal file
View file

@ -0,0 +1,47 @@
/*
The Evolving Distribution Objects framework (EDO) is a template-based,
ANSI-C++ evolutionary computation library which helps you to write your
own estimation of distribution algorithms.
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2.1 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
Copyright (C) 2010 Thales group
*/
/*
Authors:
Johann Dréo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _edoNormalMonoCenter_h
#define _edoNormalMonoCenter_h
#include "edoModifierMass.h"
#include "edoNormalMono.h"
template < typename EOT >
class edoNormalMonoCenter : public edoModifierMass< edoNormalMono< EOT > >
{
public:
typedef typename EOT::AtomType AtomType;
void operator() ( edoNormalMono< EOT >& distrib, EOT& mass )
{
distrib.mean() = mass;
}
};
#endif // !_edoNormalMonoCenter_h

12
src/doNormalMulti.h → src/edoNormalMulti.h
View file

@ -5,23 +5,23 @@
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _doNormalMulti_h
#define _doNormalMulti_h
#ifndef _edoNormalMulti_h
#define _edoNormalMulti_h
#include <boost/numeric/ublas/symmetric.hpp>
#include <boost/numeric/ublas/lu.hpp>
#include "doDistrib.h"
#include "edoDistrib.h"
namespace ublas = boost::numeric::ublas;
template < typename EOT >
class doNormalMulti : public doDistrib< EOT >
class edoNormalMulti : public edoDistrib< EOT >
{
public:
typedef typename EOT::AtomType AtomType;
doNormalMulti
edoNormalMulti
(
const ublas::vector< AtomType >& mean,
const ublas::symmetric_matrix< AtomType, ublas::lower >& varcovar
@ -48,4 +48,4 @@ private:
ublas::symmetric_matrix< AtomType, ublas::lower > _varcovar;
};
#endif // !_doNormalMulti_h
#endif // !_edoNormalMulti_h

48
src/edoNormalMultiCenter.h Normal file
View file

@ -0,0 +1,48 @@
/*
The Evolving Distribution Objects framework (EDO) is a template-based,
ANSI-C++ evolutionary computation library which helps you to write your
own estimation of distribution algorithms.
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2.1 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
Copyright (C) 2010 Thales group
*/
/*
Authors:
Johann Dréo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _edoNormalMultiCenter_h
#define _edoNormalMultiCenter_h
#include "edoModifierMass.h"
#include "edoNormalMulti.h"
template < typename EOT >
class edoNormalMultiCenter : public edoModifierMass< edoNormalMulti< EOT > >
{
public:
typedef typename EOT::AtomType AtomType;
void operator() ( edoNormalMulti< EOT >& distrib, EOT& mass )
{
ublas::vector< AtomType > mean( distrib.size() );
std::copy( mass.begin(), mass.end(), mean.begin() );
distrib.mean() = mean;
}
};
#endif // !_edoNormalMultiCenter_h

95
src/edoSampler.h Normal file
View file

@ -0,0 +1,95 @@
/*
The Evolving Distribution Objects framework (EDO) is a template-based,
ANSI-C++ evolutionary computation library which helps you to write your
own estimation of distribution algorithms.
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2.1 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
Copyright (C) 2010 Thales group
*/
/*
Authors:
Johann Dréo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _edoSampler_h
#define _edoSampler_h
#include <eoFunctor.h>
#include "edoBounder.h"
#include "edoBounderNo.h"
template < typename D >
class edoSampler : public eoUF< D&, typename D::EOType >
{
public:
typedef typename D::EOType EOType;
edoSampler(edoBounder< EOType > & bounder)
: /*_dummy_bounder(),*/ _bounder(bounder)
{}
/*
edoSampler()
: _dummy_bounder(), _bounder( _dummy_bounder )
{}
*/
// virtual EOType operator()( D& ) = 0 (provided by eoUF< A1, R >)
virtual EOType sample( D& ) = 0;
EOType operator()( D& distrib )
{
unsigned int size = distrib.size();
assert(size > 0);
//-------------------------------------------------------------
// Point we want to sample to get higher a set of points
// (coordinates in n dimension)
// x = {x1, x2, ..., xn}
// the sample method is implemented in the derivated class
//-------------------------------------------------------------
EOType solution(sample(distrib));
//-------------------------------------------------------------
//-------------------------------------------------------------
// Now we are bounding the distribution thanks to min and max
// parameters.
//-------------------------------------------------------------
_bounder(solution);
//-------------------------------------------------------------
return solution;
}
private:
//edoBounderNo<EOType> _dummy_bounder;
//! Bounder functor
edoBounder< EOType > & _bounder;
};
#endif // !_edoSampler_h

91
src/edoSamplerNormalMono.h Normal file
View file

@ -0,0 +1,91 @@
/*
The Evolving Distribution Objects framework (EDO) is a template-based,
ANSI-C++ evolutionary computation library which helps you to write your
own estimation of distribution algorithms.
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2.1 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
Copyright (C) 2010 Thales group
*/
/*
Authors:
Johann Dréo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _edoSamplerNormalMono_h
#define _edoSamplerNormalMono_h
#include <utils/eoRNG.h>
#include "edoSampler.h"
#include "edoNormalMono.h"
#include "edoBounder.h"
/**
* edoSamplerNormalMono
* This class uses the NormalMono distribution parameters (bounds) to return
* a random position used for population sampling.
*/
template < typename EOT >
class edoSamplerNormalMono : public edoSampler< edoNormalMono< EOT > >
{
public:
typedef typename EOT::AtomType AtomType;
edoSamplerNormalMono( edoBounder< EOT > & bounder )
: edoSampler< edoNormalMono< EOT > >( bounder )
{}
EOT sample( edoNormalMono< EOT >& distrib )
{
unsigned int size = distrib.size();
assert(size > 0);
//-------------------------------------------------------------
// Point we want to sample to get higher a set of points
// (coordinates in n dimension)
// x = {x1, x2, ..., xn}
//-------------------------------------------------------------
EOT solution;
//-------------------------------------------------------------
//-------------------------------------------------------------
// Sampling all dimensions
//-------------------------------------------------------------
for (unsigned int i = 0; i < size; ++i)
{
AtomType mean = distrib.mean()[i];
AtomType variance = distrib.variance()[i];
AtomType random = rng.normal(mean, variance);
assert(variance >= 0);
solution.push_back(random);
}
//-------------------------------------------------------------
return solution;
}
};
#endif // !_edoSamplerNormalMono_h

59
src/doSamplerNormalMulti.h → src/edoSamplerNormalMulti.h
View file

@ -1,30 +1,39 @@
// (c) Thales group, 2010
/*
Authors:
Johann Dreo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
The Evolving Distribution Objects framework (EDO) is a template-based,
ANSI-C++ evolutionary computation library which helps you to write your
own estimation of distribution algorithms.
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2.1 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
Copyright (C) 2010 Thales group
*/
/*
Authors:
Johann Dréo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _doSamplerNormalMulti_h
#define _doSamplerNormalMulti_h
#ifndef _edoSamplerNormalMulti_h
#define _edoSamplerNormalMulti_h
#include <boost/numeric/ublas/matrix.hpp>
#include <boost/numeric/ublas/symmetric.hpp>
#include <edoSampler.h>
#include <boost/numeric/ublas/lu.hpp>
#include <boost/numeric/ublas/symmetric.hpp>
#include <utils/eoRNG.h>
#include "doSampler.h"
#include "doNormalMulti.h"
#include "doBounder.h"
/**
* doSamplerNormalMulti
* This class uses the Normal distribution parameters (bounds) to return
* a random position used for population sampling.
*/
template < typename EOT >
class doSamplerNormalMulti : public doSampler< doNormalMulti< EOT > >
template< class EOT >
class edoSamplerNormalMulti : public edoSampler< edoNormalMulti< EOT > >
{
public:
typedef typename EOT::AtomType AtomType;
@ -96,11 +105,11 @@ public:
ublas::symmetric_matrix< AtomType, ublas::lower > _L;
};
doSamplerNormalMulti( doBounder< EOT > & bounder )
: doSampler< doNormalMulti< EOT > >( bounder )
edoSamplerNormalMulti( edoBounder< EOT > & bounder )
: edoSampler< edoNormalMulti< EOT > >( bounder )
{}
EOT sample( doNormalMulti< EOT >& distrib )
EOT sample( edoNormalMulti< EOT >& distrib )
{
unsigned int size = distrib.size();
@ -162,4 +171,4 @@ public:
}
};
#endif // !_doSamplerNormalMulti_h
#endif // !_edoSamplerNormalMulti_h

96
src/edoSamplerUniform.h Normal file
View file

@ -0,0 +1,96 @@
/*
The Evolving Distribution Objects framework (EDO) is a template-based,
ANSI-C++ evolutionary computation library which helps you to write your
own estimation of distribution algorithms.
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2.1 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
Copyright (C) 2010 Thales group
*/
/*
Authors:
Johann Dréo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _edoSamplerUniform_h
#define _edoSamplerUniform_h
#include <utils/eoRNG.h>
#include "edoSampler.h"
#include "edoUniform.h"
/**
* edoSamplerUniform
* This class uses the Uniform distribution parameters (bounds) to return
* a random position used for population sampling.
*/
template < typename EOT, class D=edoUniform<EOT> > // FIXME: D template name is there really used ?!?
class edoSamplerUniform : public edoSampler< edoUniform< EOT > >
{
public:
typedef D Distrib;
edoSamplerUniform(edoBounder< EOT > & bounder)
: edoSampler< edoUniform<EOT> >(bounder) // FIXME: Why D is not used here ?
{}
/*
edoSamplerUniform()
: edoSampler< edoUniform<EOT> >()
{}
*/
EOT sample( edoUniform< EOT >& distrib )
{
unsigned int size = distrib.size();
assert(size > 0);
//-------------------------------------------------------------
// Point we want to sample to get higher a set of points
// (coordinates in n dimension)
// x = {x1, x2, ..., xn}
//-------------------------------------------------------------
EOT solution;
//-------------------------------------------------------------
//-------------------------------------------------------------
// Sampling all dimensions
//-------------------------------------------------------------
for (unsigned int i = 0; i < size; ++i)
{
double min = distrib.min()[i];
double max = distrib.max()[i];
double random = rng.uniform(min, max);
assert(min <= random && random <= max);
solution.push_back(random);
}
//-------------------------------------------------------------
return solution;
}
};
#endif // !_edoSamplerUniform_h

43
src/edoUniform.h Normal file
View file

@ -0,0 +1,43 @@
/*
The Evolving Distribution Objects framework (EDO) is a template-based,
ANSI-C++ evolutionary computation library which helps you to write your
own estimation of distribution algorithms.
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2.1 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
Copyright (C) 2010 Thales group
*/
/*
Authors:
Johann Dréo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _edoUniform_h
#define _edoUniform_h
#include "edoDistrib.h"
#include "edoVectorBounds.h"
template < typename EOT >
class edoUniform : public edoDistrib< EOT >, public edoVectorBounds< EOT >
{
public:
edoUniform(EOT min, EOT max)
: edoVectorBounds< EOT >(min, max)
{}
};
#endif // !_edoUniform_h

55
src/edoUniformCenter.h Normal file
View file

@ -0,0 +1,55 @@
/*
The Evolving Distribution Objects framework (EDO) is a template-based,
ANSI-C++ evolutionary computation library which helps you to write your
own estimation of distribution algorithms.
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2.1 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
Copyright (C) 2010 Thales group
*/
/*
Authors:
Johann Dréo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _edoUniformCenter_h
#define _edoUniformCenter_h
#include "edoModifierMass.h"
#include "edoUniform.h"
template < typename EOT >
class edoUniformCenter : public edoModifierMass< edoUniform< EOT > >
{
public:
typedef typename EOT::AtomType AtomType;
void operator() ( edoUniform< EOT >& distrib, EOT& mass )
{
for (unsigned int i = 0, n = mass.size(); i < n; ++i)
{
AtomType& min = distrib.min()[i];
AtomType& max = distrib.max()[i];
AtomType range = (max - min) / 2;
min = mass[i] - range;
max = mass[i] + range;
}
}
};
#endif // !_edoUniformCenter_h

56
src/edoVectorBounds.h Normal file
View file

@ -0,0 +1,56 @@
/*
The Evolving Distribution Objects framework (EDO) is a template-based,
ANSI-C++ evolutionary computation library which helps you to write your
own estimation of distribution algorithms.
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2.1 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
Copyright (C) 2010 Thales group
*/
/*
Authors:
Johann Dréo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _edoVectorBounds_h
#define _edoVectorBounds_h
template < typename EOT >
class edoVectorBounds
{
public:
edoVectorBounds(EOT min, EOT max)
: _min(min), _max(max)
{
assert(_min.size() > 0);
assert(_min.size() == _max.size());
}
EOT min(){return _min;}
EOT max(){return _max;}
unsigned int size()
{
assert(_min.size() == _max.size());
return _min.size();
}
private:
EOT _min;
EOT _max;
};
#endif // !_edoVectorBounds_h

6
src/utils/CMakeLists.txt
View file

@ -5,10 +5,10 @@
FILE(GLOB SOURCES *.cpp)
SET(LIBRARY_OUTPUT_PATH ${CMAKE_BINARY_DIR}/lib)
ADD_LIBRARY(doutils ${SOURCES})
INSTALL(TARGETS doutils ARCHIVE DESTINATION lib COMPONENT libraries)
ADD_LIBRARY(edoutils ${SOURCES})
INSTALL(TARGETS edoutils ARCHIVE DESTINATION lib COMPONENT libraries)
FILE(GLOB HDRS *.h utils)
INSTALL(FILES ${HDRS} DESTINATION include/do/utils COMPONENT headers)
INSTALL(FILES ${HDRS} DESTINATION include/edo/utils COMPONENT headers)
######################################################################################

74
src/utils/doFileSnapshot.h
View file

@ -1,74 +0,0 @@
//-----------------------------------------------------------------------------
// doFileSnapshot.h
// (c) Marc Schoenauer, Maarten Keijzer and GeNeura Team, 2001
/*
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Contact: todos@geneura.ugr.es, http://geneura.ugr.es
Marc.Schoenauer@polytechnique.fr
mkeijzer@dhi.dk
Johann Dreo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
//-----------------------------------------------------------------------------
#ifndef _doFileSnapshot_h
#define _doFileSnapshot_h
#include <string>
#include <fstream>
#include <stdexcept>
#include "utils/eoMonitor.h"
class doFileSnapshot : public eoMonitor
{
public:
doFileSnapshot(std::string dirname,
unsigned int frequency = 1,
std::string filename = "gen",
std::string delim = " ",
unsigned int counter = 0,
bool rmFiles = true,
bool saveFilenames = true);
virtual ~doFileSnapshot();
virtual bool hasChanged() {return _boolChanged;}
virtual std::string getDirName() { return _dirname; }
virtual unsigned int getCounter() { return _counter; }
virtual const std::string baseFileName() { return _filename;}
std::string getFileName() {return _currentFileName;}
void setCurrentFileName();
virtual eoMonitor& operator()(void);
virtual eoMonitor& operator()(std::ostream& os);
private :
std::string _dirname;
unsigned int _frequency;
std::string _filename;
std::string _delim;
std::string _currentFileName;
unsigned int _counter;
bool _saveFilenames;
std::ofstream* _descOfFiles;
bool _boolChanged;
};
#endif // !_doFileSnapshot

32
src/utils/doHyperVolume.h
View file

@ -1,32 +0,0 @@
// (c) Thales group, 2010
/*
Authors:
Johann Dreo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _doHyperVolume_h
#define _doHyperVolume_h
template < typename EOT >
class doHyperVolume
{
public:
typedef typename EOT::AtomType AtomType;
doHyperVolume() : _hv(1) {}
void update(AtomType v)
{
_hv *= ::sqrt( v );
assert( _hv <= std::numeric_limits< AtomType >::max() );
}
AtomType get_hypervolume() const { return _hv; }
protected:
AtomType _hv;
};
#endif // !_doHyperVolume_h

75
src/utils/doPopStat.h
View file

@ -1,75 +0,0 @@
// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
//-----------------------------------------------------------------------------
// doPopStat.h
// (c) Maarten Keijzer, Marc Schoenauer and GeNeura Team, 2001
/*
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Contact: todos@geneura.ugr.es, http://geneura.ugr.es
Marc.Schoenauer@polytechnique.fr
mkeijzer@dhi.dk
Johann Dreo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
//-----------------------------------------------------------------------------
/** WARNING: this file contains 2 classes:
eoPopString and eoSortedPopString
that transform the population into a std::string
that can be used to dump to the screen
*/
#ifndef _doPopStat_h
#define _doPopStat_h
#include <utils/eoStat.h>
/** Thanks to MS/VC++, eoParam mechanism is unable to handle std::vectors of stats.
This snippet is a workaround:
This class will "print" a whole population into a std::string - that you can later
send to any stream
This is the plain version - see eoPopString for the Sorted version
Note: this Stat should probably be used only within eoStdOutMonitor, and not
inside an eoFileMonitor, as the eoState construct will work much better there.
*/
template <class EOT>
class doPopStat : public eoStat<EOT, std::string>
{
public:
using eoStat<EOT, std::string>::value;
/** default Ctor, void std::string by default, as it appears
on the description line once at beginning of evolution. and
is meaningless there. _howMany defaults to 0, that is, the whole
population*/
doPopStat(std::string _desc ="")
: eoStat<EOT, std::string>("", _desc) {}
/** Fills the value() of the eoParam with the dump of the population. */
void operator()(const eoPop<EOT>& _pop)
{
std::ostringstream os;
os << _pop;
value() = os.str();
}
};
#endif // !_doPopStat_h

54
src/utils/doStat.h
View file

@ -1,54 +0,0 @@
// (c) Thales group, 2010
/*
Authors:
Johann Dreo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _doStat_h
#define _doStat_h
#include <eoFunctor.h>
template < typename D >
class doStatBase : public eoUF< const D&, void >
{
public:
// virtual void operator()( const D& ) = 0 (provided by eoUF< A1, R >)
virtual void lastCall( const D& ) {}
virtual std::string className() const { return "doStatBase"; }
};
template < typename D > class doCheckPoint;
template < typename D, typename T >
class doStat : public eoValueParam< T >, public doStatBase< D >
{
public:
doStat(T value, std::string description)
: eoValueParam< T >(value, description)
{}
virtual std::string className(void) const { return "doStat"; }
doStat< D, T >& addTo(doCheckPoint< D >& cp) { cp.add(*this); return *this; }
// TODO: doStat< D, T >& addTo(eoMonitor& mon) { mon.add(*this); return *this; }
};
//! A parent class for any kind of distribution to dump parameter to std::string type
template < typename D >
class doDistribStat : public doStat< D, std::string >
{
public:
using doStat< D, std::string >::value;
doDistribStat(std::string desc)
: doStat< D, std::string >("", desc)
{}
};
#endif // !_doStat_h

35
src/utils/doStatNormalMono.h
View file

@ -1,35 +0,0 @@
// (c) Thales group, 2010
/*
Authors:
Johann Dreo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _doStatNormalMono_h
#define _doStatNormalMono_h
#include "doStat.h"
#include "doNormalMono.h"
template < typename EOT >
class doStatNormalMono : public doDistribStat< doNormalMono< EOT > >
{
public:
using doDistribStat< doNormalMono< EOT > >::value;
doStatNormalMono( std::string desc = "" )
: doDistribStat< doNormalMono< EOT > >( desc )
{}
void operator()( const doNormalMono< EOT >& distrib )
{
value() = "\n# ====== mono normal distribution dump =====\n";
std::ostringstream os;
os << distrib.mean() << " " << distrib.variance() << std::endl;
value() += os.str();
}
};
#endif // !_doStatNormalMono_h

48
src/utils/doStatNormalMulti.h
View file

@ -1,48 +0,0 @@
// (c) Thales group, 2010
/*
Authors:
Johann Dreo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _doStatNormalMulti_h
#define _doStatNormalMulti_h
#include <boost/numeric/ublas/io.hpp>
#include "doStat.h"
#include "doNormalMulti.h"
template < typename EOT >
class doStatNormalMulti : public doDistribStat< doNormalMulti< EOT > >
{
public:
typedef typename EOT::AtomType AtomType;
using doDistribStat< doNormalMulti< EOT > >::value;
doStatNormalMulti( std::string desc = "" )
: doDistribStat< doNormalMulti< EOT > >( desc )
{}
void operator()( const doNormalMulti< EOT >& distrib )
{
value() = "\n# ====== multi normal distribution dump =====\n";
std::ostringstream os;
os << distrib.mean() << " " << distrib.varcovar() << std::endl;
// ublas::vector< AtomType > mean = distrib.mean();
// std::copy(mean.begin(), mean.end(), std::ostream_iterator< std::string >( os, " " ));
// ublas::symmetric_matrix< AtomType, ublas::lower > varcovar = distrib.varcovar();
// std::copy(varcovar.begin(), varcovar.end(), std::ostream_iterator< std::string >( os, " " ));
// os << std::endl;
value() += os.str();
}
};
#endif // !_doStatNormalMulti_h

35
src/utils/doStatUniform.h
View file

@ -1,35 +0,0 @@
// (c) Thales group, 2010
/*
Authors:
Johann Dreo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _doStatUniform_h
#define _doStatUniform_h
#include "doStat.h"
#include "doUniform.h"
template < typename EOT >
class doStatUniform : public doDistribStat< doUniform< EOT > >
{
public:
using doDistribStat< doUniform< EOT > >::value;
doStatUniform( std::string desc = "" )
: doDistribStat< doUniform< EOT > >( desc )
{}
void operator()( const doUniform< EOT >& distrib )
{
value() = "\n# ====== uniform distribution dump =====\n";
std::ostringstream os;
os << distrib.min() << " " << distrib.max() << std::endl;
value() += os.str();
}
};
#endif // !_doStatUniform_h

52
src/utils/doCheckPoint.h → src/utils/edoCheckPoint.h
View file

@ -1,28 +1,48 @@
// (c) Thales group, 2010
/*
Authors:
Johann Dreo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
The Evolving Distribution Objects framework (EDO) is a template-based,
ANSI-C++ evolutionary computation library which helps you to write your
own estimation of distribution algorithms.
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2.1 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
Copyright (C) 2010 Thales group
*/
/*
Authors:
Johann Dréo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _doCheckPoint_h
#define _doCheckPoint_h
#ifndef _edoCheckPoint_h
#define _edoCheckPoint_h
#include <utils/eoUpdater.h>
#include <utils/eoMonitor.h>
#include "doContinue.h"
#include "doStat.h"
#include "edoContinue.h"
#include "edoStat.h"
//! eoCheckPoint< EOT > classe fitted to Distribution Object library
template < typename D >
class doCheckPoint : public doContinue< D >
class edoCheckPoint : public edoContinue< D >
{
public:
typedef typename D::EOType EOType;
doCheckPoint(doContinue< D >& _cont)
edoCheckPoint(edoContinue< D >& _cont)
{
_continuators.push_back( &_cont );
}
@ -74,12 +94,12 @@ public:
return bContinue;
}
void add(doContinue< D >& cont) { _continuators.push_back( &cont ); }
void add(doStatBase< D >& stat) { _stats.push_back( &stat ); }
void add(edoContinue< D >& cont) { _continuators.push_back( &cont ); }
void add(edoStatBase< D >& stat) { _stats.push_back( &stat ); }
void add(eoMonitor& mon) { _monitors.push_back( &mon ); }
void add(eoUpdater& upd) { _updaters.push_back( &upd ); }
virtual std::string className(void) const { return "doCheckPoint"; }
virtual std::string className(void) const { return "edoCheckPoint"; }
std::string allClassNames() const
{
@ -117,10 +137,10 @@ public:
}
private:
std::vector< doContinue< D >* > _continuators;
std::vector< doStatBase< D >* > _stats;
std::vector< edoContinue< D >* > _continuators;
std::vector< edoStatBase< D >* > _stats;
std::vector< eoMonitor* > _monitors;
std::vector< eoUpdater* > _updaters;
};
#endif // !_doCheckPoint_h
#endif // !_edoCheckPoint_h

61
src/utils/doFileSnapshot.cpp → src/utils/edoFileSnapshot.cpp
View file

@ -1,28 +1,33 @@
//-----------------------------------------------------------------------------
// doFileSnapshot.cpp
// (c) Marc Schoenauer, Maarten Keijzer and GeNeura Team, 2001
/*
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2 of the License, or (at your option) any later version.
The Evolving Distribution Objects framework (EDO) is a template-based,
ANSI-C++ evolutionary computation library which helps you to write your
own estimation of distribution algorithms.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2.1 of the License, or (at your option) any later version.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
Contact: todos@geneura.ugr.es, http://geneura.ugr.es
Marc.Schoenauer@polytechnique.fr
mkeijzer@dhi.dk
Johann Dreo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
//-----------------------------------------------------------------------------
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
Copyright (c) Marc Schoenauer, Maarten Keijzer and GeNeura Team, 2001
Copyright (C) 2010 Thales group
*/
/*
Authors:
todos@geneura.ugr.es
Marc Schoenauer <Marc.Schoenauer@polytechnique.fr>
Martin Keijzer <mkeijzer@dhi.dk>
Johann Dréo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#include <cstdlib>
@ -30,11 +35,11 @@
#include <fstream>
#include <stdexcept>
#include <utils/doFileSnapshot.h>
#include <utils/edoFileSnapshot.h>
#include <utils/compatibility.h>
#include <utils/eoParam.h>
doFileSnapshot::doFileSnapshot(std::string dirname,
edoFileSnapshot::edoFileSnapshot(std::string dirname,
unsigned int frequency /*= 1*/,
std::string filename /*= "gen"*/,
std::string delim /*= " "*/,
@ -79,19 +84,19 @@ doFileSnapshot::doFileSnapshot(std::string dirname,
}
doFileSnapshot::~doFileSnapshot()
edoFileSnapshot::~edoFileSnapshot()
{
delete _descOfFiles;
}
void doFileSnapshot::setCurrentFileName()
void edoFileSnapshot::setCurrentFileName()
{
std::ostringstream oscount;
oscount << _counter;
_currentFileName = _dirname + "/" + _filename + oscount.str();
}
eoMonitor& doFileSnapshot::operator()(void)
eoMonitor& edoFileSnapshot::operator()(void)
{
if (_counter % _frequency)
{
@ -107,7 +112,7 @@ eoMonitor& doFileSnapshot::operator()(void)
if (!os)
{
std::string str = "doFileSnapshot: Could not open " + _currentFileName;
std::string str = "edoFileSnapshot: Could not open " + _currentFileName;
throw std::runtime_error(str);
}
@ -119,7 +124,7 @@ eoMonitor& doFileSnapshot::operator()(void)
return operator()(os);
}
eoMonitor& doFileSnapshot::operator()(std::ostream& os)
eoMonitor& edoFileSnapshot::operator()(std::ostream& os)
{
iterator it = vec.begin();

79
src/utils/edoFileSnapshot.h Normal file
View file

@ -0,0 +1,79 @@
/*
The Evolving Distribution Objects framework (EDO) is a template-based,
ANSI-C++ evolutionary computation library which helps you to write your
own estimation of distribution algorithms.
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2.1 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
Copyright (c) Marc Schoenauer, Maarten Keijzer and GeNeura Team, 2001
Copyright (C) 2010 Thales group
*/
/*
Authors:
todos@geneura.ugr.es
Marc Schoenauer <Marc.Schoenauer@polytechnique.fr>
Martin Keijzer <mkeijzer@dhi.dk>
Johann Dréo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _edoFileSnapshot_h
#define _edoFileSnapshot_h
#include <string>
#include <fstream>
#include <stdexcept>
#include "utils/eoMonitor.h"
class edoFileSnapshot : public eoMonitor
{
public:
edoFileSnapshot(std::string dirname,
unsigned int frequency = 1,
std::string filename = "gen",
std::string delim = " ",
unsigned int counter = 0,
bool rmFiles = true,
bool saveFilenames = true);
virtual ~edoFileSnapshot();
virtual bool hasChanged() {return _boolChanged;}
virtual std::string getDirName() { return _dirname; }
virtual unsigned int getCounter() { return _counter; }
virtual const std::string baseFileName() { return _filename;}
std::string getFileName() {return _currentFileName;}
void setCurrentFileName();
virtual eoMonitor& operator()(void);
virtual eoMonitor& operator()(std::ostream& os);
private :
std::string _dirname;
unsigned int _frequency;
std::string _filename;
std::string _delim;
std::string _currentFileName;
unsigned int _counter;
bool _saveFilenames;
std::ofstream* _descOfFiles;
bool _boolChanged;
};
#endif // !_edoFileSnapshot

52
src/utils/edoHyperVolume.h Normal file
View file

@ -0,0 +1,52 @@
/*
The Evolving Distribution Objects framework (EDO) is a template-based,
ANSI-C++ evolutionary computation library which helps you to write your
own estimation of distribution algorithms.
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2.1 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
Copyright (C) 2010 Thales group
*/
/*
Authors:
Johann Dréo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _edoHyperVolume_h
#define _edoHyperVolume_h
template < typename EOT >
class edoHyperVolume
{
public:
typedef typename EOT::AtomType AtomType;
edoHyperVolume() : _hv(1) {}
void update(AtomType v)
{
_hv *= ::sqrt( v );
assert( _hv <= std::numeric_limits< AtomType >::max() );
}
AtomType get_hypervolume() const { return _hv; }
protected:
AtomType _hv;
};
#endif // !_edoHyperVolume_h

70
src/utils/edoPopStat.h Normal file
View file

@ -0,0 +1,70 @@
/*
The Evolving Distribution Objects framework (EDO) is a template-based,
ANSI-C++ evolutionary computation library which helps you to write your
own estimation of distribution algorithms.
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2.1 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
Copyright (c) Marc Schoenauer, Maarten Keijzer and GeNeura Team, 2001
Copyright (C) 2010 Thales group
*/
/*
Authors:
todos@geneura.ugr.es
Marc Schoenauer <Marc.Schoenauer@polytechnique.fr>
Martin Keijzer <mkeijzer@dhi.dk>
Johann Dréo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _edoPopStat_h
#define _edoPopStat_h
#include <utils/eoStat.h>
/** Thanks to MS/VC++, eoParam mechanism is unable to handle std::vectors of stats.
This snippet is a workaround:
This class will "print" a whole population into a std::string - that you can later
send to any stream
This is the plain version - see eoPopString for the Sorted version
Note: this Stat should probably be used only within eoStdOutMonitor, and not
inside an eoFileMonitor, as the eoState construct will work much better there.
*/
template <class EOT>
class edoPopStat : public eoStat<EOT, std::string>
{
public:
using eoStat<EOT, std::string>::value;
/** default Ctor, void std::string by default, as it appears
on the description line once at beginning of evolution. and
is meaningless there. _howMany defaults to 0, that is, the whole
population*/
edoPopStat(std::string _desc ="")
: eoStat<EOT, std::string>("", _desc) {}
/** Fills the value() of the eoParam with the dump of the population. */
void operator()(const eoPop<EOT>& _pop)
{
std::ostringstream os;
os << _pop;
value() = os.str();
}
};
#endif // !_edoPopStat_h

74
src/utils/edoStat.h Normal file
View file

@ -0,0 +1,74 @@
/*
The Evolving Distribution Objects framework (EDO) is a template-based,
ANSI-C++ evolutionary computation library which helps you to write your
own estimation of distribution algorithms.
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2.1 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
Copyright (C) 2010 Thales group
*/
/*
Authors:
Johann Dréo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _edoStat_h
#define _edoStat_h
#include <eoFunctor.h>
template < typename D >
class edoStatBase : public eoUF< const D&, void >
{
public:
// virtual void operator()( const D& ) = 0 (provided by eoUF< A1, R >)
virtual void lastCall( const D& ) {}
virtual std::string className() const { return "edoStatBase"; }
};
template < typename D > class edoCheckPoint;
template < typename D, typename T >
class edoStat : public eoValueParam< T >, public edoStatBase< D >
{
public:
edoStat(T value, std::string description)
: eoValueParam< T >(value, description)
{}
virtual std::string className(void) const { return "edoStat"; }
edoStat< D, T >& addTo(edoCheckPoint< D >& cp) { cp.add(*this); return *this; }
// TODO: edoStat< D, T >& addTo(eoMonitor& mon) { mon.add(*this); return *this; }
};
//! A parent class for any kind of distribution to dump parameter to std::string type
template < typename D >
class edoDistribStat : public edoStat< D, std::string >
{
public:
using edoStat< D, std::string >::value;
edoDistribStat(std::string desc)
: edoStat< D, std::string >("", desc)
{}
};
#endif // !_edoStat_h

55
src/utils/edoStatNormalMono.h Normal file
View file

@ -0,0 +1,55 @@
/*
The Evolving Distribution Objects framework (EDO) is a template-based,
ANSI-C++ evolutionary computation library which helps you to write your
own estimation of distribution algorithms.
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2.1 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
Copyright (C) 2010 Thales group
*/
/*
Authors:
Johann Dréo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _edoStatNormalMono_h
#define _edoStatNormalMono_h
#include "edoStat.h"
#include "edoNormalMono.h"
template < typename EOT >
class edoStatNormalMono : public edoDistribStat< edoNormalMono< EOT > >
{
public:
using edoDistribStat< edoNormalMono< EOT > >::value;
edoStatNormalMono( std::string desc = "" )
: edoDistribStat< edoNormalMono< EOT > >( desc )
{}
void operator()( const edoNormalMono< EOT >& distrib )
{
value() = "\n# ====== mono normal distribution dump =====\n";
std::ostringstream os;
os << distrib.mean() << " " << distrib.variance() << std::endl;
value() += os.str();
}
};
#endif // !_edoStatNormalMono_h

68
src/utils/edoStatNormalMulti.h Normal file
View file

@ -0,0 +1,68 @@
/*
The Evolving Distribution Objects framework (EDO) is a template-based,
ANSI-C++ evolutionary computation library which helps you to write your
own estimation of distribution algorithms.
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2.1 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
Copyright (C) 2010 Thales group
*/
/*
Authors:
Johann Dréo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _edoStatNormalMulti_h
#define _edoStatNormalMulti_h
#include <boost/numeric/ublas/io.hpp>
#include "edoStat.h"
#include "edoNormalMulti.h"
template < typename EOT >
class edoStatNormalMulti : public edoDistribStat< edoNormalMulti< EOT > >
{
public:
typedef typename EOT::AtomType AtomType;
using edoDistribStat< edoNormalMulti< EOT > >::value;
edoStatNormalMulti( std::string desc = "" )
: edoDistribStat< edoNormalMulti< EOT > >( desc )
{}
void operator()( const edoNormalMulti< EOT >& distrib )
{
value() = "\n# ====== multi normal distribution dump =====\n";
std::ostringstream os;
os << distrib.mean() << " " << distrib.varcovar() << std::endl;
// ublas::vector< AtomType > mean = distrib.mean();
// std::copy(mean.begin(), mean.end(), std::ostream_iterator< std::string >( os, " " ));
// ublas::symmetric_matrix< AtomType, ublas::lower > varcovar = distrib.varcovar();
// std::copy(varcovar.begin(), varcovar.end(), std::ostream_iterator< std::string >( os, " " ));
// os << std::endl;
value() += os.str();
}
};
#endif // !_edoStatNormalMulti_h

55
src/utils/edoStatUniform.h Normal file
View file

@ -0,0 +1,55 @@
/*
The Evolving Distribution Objects framework (EDO) is a template-based,
ANSI-C++ evolutionary computation library which helps you to write your
own estimation of distribution algorithms.
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2.1 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
Copyright (C) 2010 Thales group
*/
/*
Authors:
Johann Dréo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef _edoStatUniform_h
#define _edoStatUniform_h
#include "edoStat.h"
#include "edoUniform.h"
template < typename EOT >
class edoStatUniform : public edoDistribStat< edoUniform< EOT > >
{
public:
using edoDistribStat< edoUniform< EOT > >::value;
edoStatUniform( std::string desc = "" )
: edoDistribStat< edoUniform< EOT > >( desc )
{}
void operator()( const edoUniform< EOT >& distrib )
{
value() = "\n# ====== uniform distribution dump =====\n";
std::ostringstream os;
os << distrib.min() << " " << distrib.max() << std::endl;
value() += os.str();
}
};
#endif // !_edoStatUniform_h

6
test/CMakeLists.txt
View file

@ -33,7 +33,7 @@ LINK_DIRECTORIES(${Boost_LIBRARY_DIRS})
INCLUDE_DIRECTORIES(${CMAKE_SOURCE_DIR}/application/common)
SET(SOURCES
t-doEstimatorNormalMulti
t-edoEstimatorNormalMulti
t-mean-distance
t-bounderno
t-uniform
@ -43,8 +43,8 @@ SET(SOURCES
FOREACH(current ${SOURCES})
ADD_EXECUTABLE(${current} ${current}.cpp)
ADD_TEST(${current} ${current})
TARGET_LINK_LIBRARIES(${current} do doutils ${EO_LIBRARIES} ${MO_LIBRARIES} ${Boost_LIBRARIES})
INSTALL(TARGETS ${current} RUNTIME DESTINATION share/do/test COMPONENT test)
TARGET_LINK_LIBRARIES(${current} edo edoutils ${EO_LIBRARIES} ${MO_LIBRARIES} ${Boost_LIBRARIES})
INSTALL(TARGETS ${current} RUNTIME DESTINATION share/edo/test COMPONENT test)
ENDFOREACH()
######################################################################################

31
test/t-bounderno.cpp
View file

@ -1,5 +1,32 @@
/*
The Evolving Distribution Objects framework (EDO) is a template-based,
ANSI-C++ evolutionary computation library which helps you to write your
own estimation of distribution algorithms.
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2.1 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
Copyright (C) 2010 Thales group
*/
/*
Authors:
Johann Dréo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#include <eo>
#include <do>
#include <edo>
#include "Rosenbrock.h"
@ -7,7 +34,7 @@ typedef eoReal< eoMinimizingFitness > EOT;
int main(void)
{
doBounderNo< EOT > bounder;
edoBounderNo< EOT > bounder;
return 0;
}

33
test/t-continue.cpp
View file

@ -1,16 +1,43 @@
/*
The Evolving Distribution Objects framework (EDO) is a template-based,
ANSI-C++ evolutionary computation library which helps you to write your
own estimation of distribution algorithms.
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2.1 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
Copyright (C) 2010 Thales group
*/
/*
Authors:
Johann Dréo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#include <eo>
#include <do>
#include <edo>
#include "Rosenbrock.h"
typedef eoReal< eoMinimizingFitness > EOT;
typedef doUniform< EOT > Distrib;
typedef edoUniform< EOT > Distrib;
int main(void)
{
eoState state;
doContinue< Distrib >* continuator = new doDummyContinue< Distrib >();
edoContinue< Distrib >* continuator = new edoDummyContinue< Distrib >();
state.storeFunctor(continuator);
return 0;

53
test/t-doEstimatorNormalMulti.cpp → test/t-edoEstimatorNormalMulti.cpp
View file

@ -1,3 +1,30 @@
/*
The Evolving Distribution Objects framework (EDO) is a template-based,
ANSI-C++ evolutionary computation library which helps you to write your
own estimation of distribution algorithms.
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2.1 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
Copyright (C) 2010 Thales group
*/
/*
Authors:
Johann Dréo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#include <sstream>
#include <iomanip>
@ -7,13 +34,13 @@
#include <utils/eoLogger.h>
#include <utils/eoParserLogger.h>
#include <do>
#include <edo>
#include "Rosenbrock.h"
#include "Sphere.h"
typedef eoReal< eoMinimizingFitness > EOT;
typedef doNormalMulti< EOT > Distrib;
typedef edoNormalMulti< EOT > Distrib;
typedef EOT::AtomType AtomType;
int main(int ac, char** av)
@ -37,7 +64,7 @@ int main(int ac, char** av)
AtomType covar3_value = parser.createParam((AtomType)1.0, "covar3", "Covar value 3", '3', section).value();
std::ostringstream ss;
ss << p_size << "_" << fixed << setprecision(1)
ss << p_size << "_" << std::fixed << std::setprecision(1)
<< mean_value << "_" << covar1_value << "_" << covar2_value << "_"
<< covar3_value << "_gen";
std::string gen_filename = ss.str();
@ -101,18 +128,18 @@ int main(int ac, char** av)
// (3a) distribution output preparation
//-----------------------------------------------------------------------------
doDummyContinue< Distrib >* distrib_dummy_continue = new doDummyContinue< Distrib >();
edoDummyContinue< Distrib >* distrib_dummy_continue = new edoDummyContinue< Distrib >();
state.storeFunctor(distrib_dummy_continue);
doCheckPoint< Distrib >* distrib_continue = new doCheckPoint< Distrib >( *distrib_dummy_continue );
edoCheckPoint< Distrib >* distrib_continue = new edoCheckPoint< Distrib >( *distrib_dummy_continue );
state.storeFunctor(distrib_continue);
doDistribStat< Distrib >* distrib_stat = new doStatNormalMulti< EOT >();
edoDistribStat< Distrib >* distrib_stat = new edoStatNormalMulti< EOT >();
state.storeFunctor(distrib_stat);
distrib_continue->add( *distrib_stat );
doFileSnapshot* distrib_file_snapshot = new doFileSnapshot( "TestResDistrib", 1, gen_filename );
edoFileSnapshot* distrib_file_snapshot = new edoFileSnapshot( "TestResDistrib", 1, gen_filename );
state.storeFunctor(distrib_file_snapshot);
distrib_file_snapshot->add(*distrib_stat);
distrib_continue->add(*distrib_file_snapshot);
@ -131,10 +158,10 @@ int main(int ac, char** av)
//-----------------------------------------------------------------------------
// Prepare bounder class to set bounds of sampling.
// This is used by doSampler.
// This is used by edoSampler.
//-----------------------------------------------------------------------------
doBounder< EOT >* bounder = new doBounderRng< EOT >(EOT(pop[0].size(), -5),
edoBounder< EOT >* bounder = new edoBounderRng< EOT >(EOT(pop[0].size(), -5),
EOT(pop[0].size(), 5),
*gen);
state.storeFunctor(bounder);
@ -146,7 +173,7 @@ int main(int ac, char** av)
// Prepare sampler class with a specific distribution
//-----------------------------------------------------------------------------
doSampler< Distrib >* sampler = new doSamplerNormalMulti< EOT >( *bounder );
edoSampler< Distrib >* sampler = new edoSamplerNormalMulti< EOT >( *bounder );
state.storeFunctor(sampler);
//-----------------------------------------------------------------------------
@ -177,11 +204,11 @@ int main(int ac, char** av)
eoCheckPoint< EOT >* pop_continue = new eoCheckPoint< EOT >( *pop_cont );
state.storeFunctor(pop_continue);
doPopStat< EOT >* pop_stat = new doPopStat<EOT>;
edoPopStat< EOT >* pop_stat = new edoPopStat<EOT>;
state.storeFunctor(pop_stat);
pop_continue->add(*pop_stat);
doFileSnapshot* pop_file_snapshot = new doFileSnapshot( "TestResPop", 1, gen_filename );
edoFileSnapshot* pop_file_snapshot = new edoFileSnapshot( "TestResPop", 1, gen_filename );
state.storeFunctor(pop_file_snapshot);
pop_file_snapshot->add(*pop_stat);
pop_continue->add(*pop_file_snapshot);
@ -195,7 +222,7 @@ int main(int ac, char** av)
// (6) estimation phase
//-----------------------------------------------------------------------------
doEstimator< Distrib >* estimator = new doEstimatorNormalMulti< EOT >();
edoEstimator< Distrib >* estimator = new edoEstimatorNormalMulti< EOT >();
state.storeFunctor(estimator);
distrib = (*estimator)( pop );

42
test/t-mean-distance.cpp
View file

@ -1,3 +1,30 @@
/*
The Evolving Distribution Objects framework (EDO) is a template-based,
ANSI-C++ evolutionary computation library which helps you to write your
own estimation of distribution algorithms.
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2.1 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
Copyright (C) 2010 Thales group
*/
/*
Authors:
Johann Dréo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#include <sys/stat.h>
#include <sys/types.h>
@ -11,13 +38,16 @@
#include <utils/eoLogger.h>
#include <utils/eoParserLogger.h>
#include <do>
#include <edo>
#include <boost/numeric/ublas/vector.hpp>
#include <boost/numeric/ublas/symmetric_matrix.hpp>
#include "Rosenbrock.h"
#include "Sphere.h"
typedef eoReal< eoMinimizingFitness > EOT;
typedef doNormalMulti< EOT > Distrib;
typedef edoNormalMulti< EOT > Distrib;
typedef EOT::AtomType AtomType;
int main(int ac, char** av)
@ -121,10 +151,10 @@ int main(int ac, char** av)
//-----------------------------------------------------------------------------
// Prepare bounder class to set bounds of sampling.
// This is used by doSampler.
// This is used by edoSampler.
//-----------------------------------------------------------------------------
doBounder< EOT >* bounder = new doBounderRng< EOT >(EOT(pop[0].size(), -5),
edoBounder< EOT >* bounder = new edoBounderRng< EOT >(EOT(pop[0].size(), -5),
EOT(pop[0].size(), 5),
*gen);
state.storeFunctor(bounder);
@ -136,7 +166,7 @@ int main(int ac, char** av)
// Prepare sampler class with a specific distribution
//-----------------------------------------------------------------------------
doSampler< Distrib >* sampler = new doSamplerNormalMulti< EOT >( *bounder );
edoSampler< Distrib >* sampler = new edoSamplerNormalMulti< EOT >( *bounder );
state.storeFunctor(sampler);
//-----------------------------------------------------------------------------
@ -161,7 +191,7 @@ int main(int ac, char** av)
// (6) estimation phase
//-----------------------------------------------------------------------------
doEstimator< Distrib >* estimator = new doEstimatorNormalMulti< EOT >();
edoEstimator< Distrib >* estimator = new edoEstimatorNormalMulti< EOT >();
state.storeFunctor(estimator);
distrib = (*estimator)( pop );

31
test/t-uniform.cpp
View file

@ -1,5 +1,32 @@
/*
The Evolving Distribution Objects framework (EDO) is a template-based,
ANSI-C++ evolutionary computation library which helps you to write your
own estimation of distribution algorithms.
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2.1 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
Copyright (C) 2010 Thales group
*/
/*
Authors:
Johann Dréo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#include <eo>
#include <do>
#include <edo>
#include "Rosenbrock.h"
@ -9,7 +36,7 @@ int main(void)
{
eoState state;
doUniform< EOT >* distrib = new doUniform< EOT >( EOT(3, -1), EOT(3, 1) );
edoUniform< EOT >* distrib = new edoUniform< EOT >( EOT(3, -1), EOT(3, 1) );
state.storeFunctor(distrib);
return 0;

2
test/test_cov_parameters.py
View file

@ -2,7 +2,7 @@
PSIZE = 10000
MEAN = 0
CMD = "./test/t-doEstimatorNormalMulti -P=%s -m=%.1f -1=%.1f -2=%.1f -3=%.1f && ./gplot.py -r TestResPop -p -w 5 -u -g %s -G results_for_test_cov_parameters -f %s_gen1"
CMD = "./test/t-edoEstimatorNormalMulti -P=%s -m=%.1f -1=%.1f -2=%.1f -3=%.1f && ./gplot.py -r TestResPop -p -w 5 -u -g %s -G results_for_test_cov_parameters -f %s_gen1"
from os import system
from numpy import arange