From d180ce2ad04536237ab1933ceaf5ae3f6501b533 Mon Sep 17 00:00:00 2001
From: Ronaldd Pinho <ronaldppinho@gmail.com>
Date: Sat, 29 Jun 2019 18:44:27 -0300
Subject: [PATCH] eo file and eoAlgo.h have been modified to absolute includes

---
 eo/src/eo       | 206 ++++++++++++++++++++++++------------------------
 eo/src/eoAlgo.h |   4 +-
 2 files changed, 106 insertions(+), 104 deletions(-)

diff --git a/eo/src/eo b/eo/src/eo
index 8196e2b14..4c3906b4d 100644
--- a/eo/src/eo
+++ b/eo/src/eo
@@ -33,118 +33,120 @@
 #endif
 
 // general purpose
-#include <utils/eoData.h>
-#include <eoObject.h>
-#include <eoPrintable.h>
-#include <eoPersistent.h>
-#include <eoScalarFitness.h>
-#include <eoDualFitness.h>
-#include <EO.h>
+#include <paradiseo/eo/utils/eoData.h>
+#include <paradiseo/eo/eoObject.h>
+#include <paradiseo/eo/eoPrintable.h>
+#include <paradiseo/eo/eoPersistent.h>
+#include <paradiseo/eo/eoScalarFitness.h>
+#include <paradiseo/eo/eoDualFitness.h>
+#include <paradiseo/eo/EO.h>
 
-#include <utils/rnd_generators.h>
-#include <eoFunctor.h>
-#include <apply.h>
+#include <paradiseo/eo/utils/rnd_generators.h>
+#include <paradiseo/eo/eoFunctor.h>
+#include <paradiseo/eo/apply.h>
 
 // eo's
-#include <eoVector.h>
+#include <paradiseo/eo/eoVector.h>
 
-#include <other/eoString.h>
+#include <paradiseo/eo/other/eoString.h>
 
-#include <utils/eoRndGenerators.h>
-#include <eoInit.h>
-#include <utils/eoUniformInit.h>
+#include <paradiseo/eo/utils/eoRndGenerators.h>
+#include <paradiseo/eo/eoInit.h>
+#include <paradiseo/eo/utils/eoUniformInit.h>
 
 // the variation operators
-#include <eoOp.h>
-#include <eoGenOp.h>
-#include <eoCloneOps.h>
-#include <eoOpContainer.h>
+#include <paradiseo/eo/eoOp.h>
+#include <paradiseo/eo/eoGenOp.h>
+#include <paradiseo/eo/eoCloneOps.h>
+#include <paradiseo/eo/eoOpContainer.h>
 // combinations of simple eoOps (eoMonOp and eoQuadOp)
-#include <eoProportionalCombinedOp.h>
+#include <paradiseo/eo/eoProportionalCombinedOp.h>
 // didactic (mimics SGA-like variation into an eoGenOp)
 // calls crossover and mutation sequentially,
 // with their respective mutation rates
-#include <eoSGAGenOp.h>
+#include <paradiseo/eo/eoSGAGenOp.h>
 // its dual: crossover, mutation (and copy) - proportional choice
 // w.r.t. given relative weights
-#include <eoPropGAGenOp.h>
+#include <paradiseo/eo/eoPropGAGenOp.h>
 
 // population
-#include <eoPop.h>
+#include <paradiseo/eo/eoPop.h>
 
 // Evaluation functions (all include eoEvalFunc.h)
-#include <eoPopEvalFunc.h>
-#include <eoEvalFuncPtr.h>
-#include <eoEvalCounterThrowException.h>
-#include <eoEvalTimeThrowException.h>
-#include <eoEvalUserTimeThrowException.h>
+#include <paradiseo/eo/eoPopEvalFunc.h>
+#include <paradiseo/eo/eoEvalFuncPtr.h>
+#include <paradiseo/eo/eoEvalCounterThrowException.h>
+#include <paradiseo/eo/eoEvalTimeThrowException.h>
+#include <paradiseo/eo/eoEvalUserTimeThrowException.h>
 
 // Continuators - all include eoContinue.h
-#include <eoCombinedContinue.h>
-#include <eoGenContinue.h>
-#include <eoSteadyFitContinue.h>
-#include <eoEvalContinue.h>
-#include <eoFitContinue.h>
-#include <eoPeriodicContinue.h>
-#include <eoTimeContinue.h> // added th T.Legrand
+#include <paradiseo/eo/eoCombinedContinue.h>
+#include <paradiseo/eo/eoGenContinue.h>
+#include <paradiseo/eo/eoSteadyFitContinue.h>
+#include <paradiseo/eo/eoEvalContinue.h>
+#include <paradiseo/eo/eoFitContinue.h>
+#include <paradiseo/eo/eoPeriodicContinue.h>
+#include <paradiseo/eo/eoTimeContinue.h> // added th T.Legrand
 #ifndef _MSC_VER
-#include <eoCtrlCContinue.h>  // CtrlC handling (using 2 global variables!)
+#include <paradiseo/eo/eoCtrlCContinue.h>  // CtrlC handling (using 2 global variables!)
 #endif
+
 // Selection
 // the eoSelectOne's
-#include <eoRandomSelect.h>
-#include <eoSequentialSelect.h>
-#include <eoDetTournamentSelect.h>
-#include <eoProportionalSelect.h>
-#include <eoFitnessScalingSelect.h> // also contains eoLinearFitScaling.h
-#include <eoRankingSelect.h>
-#include <eoStochTournamentSelect.h>
-#include <eoSharingSelect.h>
+#include <paradiseo/eo/eoRandomSelect.h>
+#include <paradiseo/eo/eoSequentialSelect.h>
+#include <paradiseo/eo/eoDetTournamentSelect.h>
+#include <paradiseo/eo/eoProportionalSelect.h>
+#include <paradiseo/eo/eoFitnessScalingSelect.h> // also contains eoLinearFitScaling.h
+#include <paradiseo/eo/eoRankingSelect.h>
+#include <paradiseo/eo/eoStochTournamentSelect.h>
+#include <paradiseo/eo/eoSharingSelect.h>
+
 // Embedding truncation selection
-#include <eoTruncatedSelectOne.h>
+#include <paradiseo/eo/eoTruncatedSelectOne.h>
 
 // the batch selection - from an eoSelectOne
-#include <eoSelectPerc.h>
-#include <eoSelectNumber.h>
-#include <eoSelectMany.h>
-#include <eoTruncatedSelectMany.h>
+#include <paradiseo/eo/eoSelectPerc.h>
+#include <paradiseo/eo/eoSelectNumber.h>
+#include <paradiseo/eo/eoSelectMany.h>
+#include <paradiseo/eo/eoTruncatedSelectMany.h>
 
 // other batch selections
 // DetSelect can also be obtained as eoSequentialSelect, an eoSelectOne
 // (using setup and an index)
-#include <eoDetSelect.h>
-#include <eoRankMuSelect.h>
+#include <paradiseo/eo/eoDetSelect.h>
+#include <paradiseo/eo/eoRankMuSelect.h>
 
 // Breeders
-#include <eoGeneralBreeder.h>	// applies one eoGenOp, stop on offspring count
-// #include <eoOneToOneBreeder.h>	// parent + SINGLE offspring compete (e.g. DE) - not ready yet...
+#include <paradiseo/eo/eoGeneralBreeder.h>	// applies one eoGenOp, stop on offspring count
+// #include <paradiseo/eo/eoOneToOneBreeder.h>	// parent + SINGLE offspring compete (e.g. DE) - not ready yet...
 
 // Replacement
-// #include <eoReplacement.h>
-#include <eoMergeReduce.h>
-#include <eoReduceMerge.h>
-#include <eoSurviveAndDie.h>
+// #include <paradiseo/eo/eoReplacement.h>
+#include <paradiseo/eo/eoMergeReduce.h>
+#include <paradiseo/eo/eoReduceMerge.h>
+#include <paradiseo/eo/eoSurviveAndDie.h>
 
 // a simple transformer
-#include <eoSGATransform.h>
+#include <paradiseo/eo/eoSGATransform.h>
 
 // Perf2Worth stuff - includes eoSelectFromWorth.h
-#include <eoNDSorting.h>
+#include <paradiseo/eo/eoNDSorting.h>
 
 
 // Algorithms
-#include <eoEasyEA.h>
-#include <eoSGA.h>
-// #include <eoEvolutionStrategy.h>   removed for a while - until eoGenOp is done
+#include <paradiseo/eo/eoEasyEA.h>
+#include <paradiseo/eo/eoSGA.h>
+// #include <paradiseo/eo/eoEvolutionStrategy.h>   removed for a while - until eoGenOp is done
 
 // Utils
-#include <utils/checkpointing>
-#include <utils/eoRealVectorBounds.h> // includes eoRealBounds.h
-#include <utils/eoIntBounds.h>        // no eoIntVectorBounds
+#include <paradiseo/eo/utils/checkpointing>
+#include <paradiseo/eo/utils/eoRealVectorBounds.h> // includes eoRealBounds.h
+#include <paradiseo/eo/utils/eoIntBounds.h>        // no eoIntVectorBounds
 
 // aliens
-#include <other/external_eo>
-#include <eoCounter.h>
+#include <paradiseo/eo/other/external_eo>
+#include <paradiseo/eo/eoCounter.h>
 
 
 //-----------------------------------------------------------------------------
@@ -154,54 +156,54 @@
 /*** Particle Swarm Optimization stuff ***/
 
 // basic particle definitions
-#include <PO.h>
-#include <eoVectorParticle.h>
-#include <eoBitParticle.h>
-#include <eoRealParticle.h>
+#include <paradiseo/eo/PO.h>
+#include <paradiseo/eo/eoVectorParticle.h>
+#include <paradiseo/eo/eoBitParticle.h>
+#include <paradiseo/eo/eoRealParticle.h>
 
 // initialization
-#include <eoParticleBestInit.h>
-#include <eoInitializer.h>
+#include <paradiseo/eo/eoParticleBestInit.h>
+#include <paradiseo/eo/eoInitializer.h>
 
 // velocities
-#include <eoVelocity.h>
-#include <eoStandardVelocity.h>
-#include <eoExtendedVelocity.h>
-#include <eoIntegerVelocity.h>
-#include <eoConstrictedVelocity.h>
-#include <eoFixedInertiaWeightedVelocity.h>
-#include <eoVariableInertiaWeightedVelocity.h>
-#include <eoConstrictedVariableWeightVelocity.h>
+#include <paradiseo/eo/eoVelocity.h>
+#include <paradiseo/eo/eoStandardVelocity.h>
+#include <paradiseo/eo/eoExtendedVelocity.h>
+#include <paradiseo/eo/eoIntegerVelocity.h>
+#include <paradiseo/eo/eoConstrictedVelocity.h>
+#include <paradiseo/eo/eoFixedInertiaWeightedVelocity.h>
+#include <paradiseo/eo/eoVariableInertiaWeightedVelocity.h>
+#include <paradiseo/eo/eoConstrictedVariableWeightVelocity.h>
 
 // flights
-#include <eoFlight.h>
-#include <eoStandardFlight.h>
-#include <eoVelocityInit.h>
-#include <eoBinaryFlight.h>
-#include <eoSigBinaryFlight.h>
+#include <paradiseo/eo/eoFlight.h>
+#include <paradiseo/eo/eoStandardFlight.h>
+#include <paradiseo/eo/eoVelocityInit.h>
+#include <paradiseo/eo/eoBinaryFlight.h>
+#include <paradiseo/eo/eoSigBinaryFlight.h>
 
 // topologies
-#include <eoTopology.h>
-#include <eoStarTopology.h>
-#include <eoLinearTopology.h>
-#include <eoRingTopology.h>
-#include <eoNeighborhood.h>
-#include <eoSocialNeighborhood.h>
+#include <paradiseo/eo/eoTopology.h>
+#include <paradiseo/eo/eoStarTopology.h>
+#include <paradiseo/eo/eoLinearTopology.h>
+#include <paradiseo/eo/eoRingTopology.h>
+#include <paradiseo/eo/eoNeighborhood.h>
+#include <paradiseo/eo/eoSocialNeighborhood.h>
 
 // PS algorithms
-#include <eoPSO.h>
-#include <eoEasyPSO.h>
-#include <eoSyncEasyPSO.h>
+#include <paradiseo/eo/eoPSO.h>
+#include <paradiseo/eo/eoEasyPSO.h>
+#include <paradiseo/eo/eoSyncEasyPSO.h>
 
 // utils
-#include <eoRealBoundModifier.h>
-#include <eoRandomRealWeightUp.h>
-#include <eoWeightUpdater.h>
-#include <eoLinearDecreasingWeightUp.h>
-#include <eoGaussRealWeightUp.h>
+#include <paradiseo/eo/eoRealBoundModifier.h>
+#include <paradiseo/eo/eoRandomRealWeightUp.h>
+#include <paradiseo/eo/eoWeightUpdater.h>
+#include <paradiseo/eo/eoLinearDecreasingWeightUp.h>
+#include <paradiseo/eo/eoGaussRealWeightUp.h>
 
-#include <utils/eoLogger.h>
-#include <utils/eoParallel.h>
+#include <paradiseo/eo/utils/eoLogger.h>
+#include <paradiseo/eo/utils/eoParallel.h>
 
 #endif
 
diff --git a/eo/src/eoAlgo.h b/eo/src/eoAlgo.h
index 494b7b76c..95f9d77c5 100644
--- a/eo/src/eoAlgo.h
+++ b/eo/src/eoAlgo.h
@@ -25,8 +25,8 @@
 #ifndef _EOALGO_H
 #define _EOALGO_H
 
-#include <eoPop.h>                   // for population
-#include <eoFunctor.h>
+#include <paradiseo/eo/eoPop.h>                   // for population
+#include <paradiseo/eo/eoFunctor.h>
 
 /**
   @defgroup Algorithms Algorithms