ParadisEO-MOEO before new separated modules
git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@361 331e1502-861f-0410-8da2-ba01fb791d7f
This commit is contained in:
liefooga
parent
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4
tags/paradiseo-moeo-0.3/AUTHORS
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tags/paradiseo-moeo-0.3/AUTHORS
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Arnaud Liefooghe
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Thomas Legrand
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Sébastien Cahon
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Abdelhakim Deneche
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0
tags/paradiseo-moeo-0.3/ChangeLog
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0
tags/paradiseo-moeo-0.3/ChangeLog
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16
tags/paradiseo-moeo-0.3/Makefile.am
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tags/paradiseo-moeo-0.3/Makefile.am
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SUBDIRS = docs src tutorials
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clean_all: clean_aux clean_doc
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-@make clean
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-@(rm -rf aclocal.m4 autom4te.cache configure config.* CO* dep* INST* install-sh miss* mkins* Makefile Makefile.in;\
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cd docs; rm -rf Makefile Makefile.in *.doxytag; cd ../src ; rm -rf Makefile Makefile.in; cd ../tutorials; rm -rf Makefile Makefile.in;\
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cd lesson1; rm -rf .deps/ Makefile Makefile.in; cd ../lesson2; rm -rf .deps/ Makefile Makefile.in)
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clean_aux:
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-@find . \( -name "*~" -o -name "*.old" -o -name "#*" -o -name "*.bak" \) -print -exec rm -rf \{\} \;
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doc:
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-@(cd docs; make doc)
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clean_doc:
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-@(cd docs; make clean-local)
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tags/paradiseo-moeo-0.3/NEWS
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tags/paradiseo-moeo-0.3/NEWS
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@ -0,0 +1,7 @@
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* release 0.1
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# Local Variables:
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# coding: iso-8859-1
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# mode: text
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# fill-column: 80
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# End:
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tags/paradiseo-moeo-0.3/README
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tags/paradiseo-moeo-0.3/README
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PARADISEO-MOEO README FILE
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=======================================================================
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check latest news at http://paradiseo.gforge.inria.fr/
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=======================================================================
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Welcome to ParadisEO-MOEO, the Multi-Objective Evolving Objects library.
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The latest news about ParadisEO-MOEO can be found on the gforge repository at
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http://paradiseo.gforge.inria.fr/
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In case of any problem, please e-mail us at
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paradiseo-help@lists.gforge.inria.fr
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==================================================================
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BUILDING PARADISEO-MOEO
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==================================================================
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The basic installation procedure goes the following:
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Go to your build-directory and run
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> ./autogen.sh --with-EOdir=$(EO_SRC)
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> make
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> make doc
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where $(EO_SRC) is the top-level source directory of PARADISEO-EO.
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In case of problems, you can read the INSTALL file - but remember this
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is a standard installation file from GNU and that it contains nothing
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specific about PARADISEO-MOEO.
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To clean everything, the simply run
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> make clean_all
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===================================================================
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DIRECTORY STRUCTURE
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===================================================================
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After unpacking the archive file, you should end up with the following
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structure:
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.../ The main PARADISEO-MOEO directory, created when unpacking.
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|
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+-- src SOURCE directory Contains most PARADISEO-MOEO .h files.
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|
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+-- docs DOCUMENTATION directory (generated by Doxygen).
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| |
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| +- html HTML files - start at index.html.
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| |
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| +- latex latex files - use to generate Postcript doc.
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| |
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| +- man Unix man format documentation.
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|
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|
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+-- tutorials APPLICATIONS - one directory per separate application.
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|
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+-- lesson1 A bi-objective flow-shop problem example with main algorithms.
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| |
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| +-benchmarks Instance files for testing.
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|
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|-- lesson2 Implement NSGA-II for the SCH1 problem.
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===================================================================
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NOTES
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===================================================================
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Mailing list : paradiseo-help@lists.gforge.inria.fr
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148
tags/paradiseo-moeo-0.3/autogen.sh
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tags/paradiseo-moeo-0.3/autogen.sh
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#!/bin/sh
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# Run this to generate all the initial makefiles, etc.
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srcdir=`dirname $0`
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PKG_NAME="the package."
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DIE=0
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(autoconf --version) < /dev/null > /dev/null 2>&1 || {
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echo
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echo "**Error**: You must have \`autoconf' installed to."
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echo "Download the appropriate package for your distribution,"
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||||
echo "or get the source tarball at ftp://ftp.gnu.org/pub/gnu/"
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DIE=1
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}
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(grep "^AM_PROG_LIBTOOL" $srcdir/configure.in >/dev/null) && {
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(libtool --version) < /dev/null > /dev/null 2>&1 || {
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echo
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echo "**Error**: You must have \`libtool' installed."
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||||
echo "Get ftp://ftp.gnu.org/pub/gnu/libtool-1.2d.tar.gz"
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echo "(or a newer version if it is available)"
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DIE=1
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}
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}
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grep "^AM_GNU_GETTEXT" $srcdir/configure.in >/dev/null && {
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grep "sed.*POTFILES" $srcdir/configure.in >/dev/null || \
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(gettext --version) < /dev/null > /dev/null 2>&1 || {
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echo
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echo "**Error**: You must have \`gettext' installed."
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echo "Get ftp://alpha.gnu.org/gnu/gettext-0.10.35.tar.gz"
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echo "(or a newer version if it is available)"
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DIE=1
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}
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}
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grep "^AM_GNOME_GETTEXT" $srcdir/configure.in >/dev/null && {
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grep "sed.*POTFILES" $srcdir/configure.in >/dev/null || \
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(gettext --version) < /dev/null > /dev/null 2>&1 || {
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||||
echo
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echo "**Error**: You must have \`gettext' installed."
|
||||
echo "Get ftp://alpha.gnu.org/gnu/gettext-0.10.35.tar.gz"
|
||||
echo "(or a newer version if it is available)"
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DIE=1
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||||
}
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}
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||||
(automake --version) < /dev/null > /dev/null 2>&1 || {
|
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echo
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||||
echo "**Error**: You must have \`automake' installed."
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||||
echo "Get ftp://ftp.gnu.org/pub/gnu/automake-1.3.tar.gz"
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||||
echo "(or a newer version if it is available)"
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DIE=1
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NO_AUTOMAKE=yes
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}
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# if no automake, don't bother testing for aclocal
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test -n "$NO_AUTOMAKE" || (aclocal --version) < /dev/null > /dev/null 2>&1 || {
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echo
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echo "**Error**: Missing \`aclocal'. The version of \`automake'"
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echo "installed doesn't appear recent enough."
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echo "Get ftp://ftp.gnu.org/pub/gnu/automake-1.3.tar.gz"
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echo "(or a newer version if it is available)"
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DIE=1
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}
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if test "$DIE" -eq 1; then
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exit 1
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fi
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if test -z "$*"; then
|
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echo "**Warning**: I am going to run \`configure' with no arguments."
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echo "If you wish to pass any to it, please specify them on the"
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echo \`$0\'" command line."
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echo
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fi
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case $CC in
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xlc )
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am_opt=--include-deps;;
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esac
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for coin in `find $srcdir -name configure.in -print`
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do
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dr=`dirname $coin`
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||||
if test -f $dr/NO-AUTO-GEN; then
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echo skipping $dr -- flagged as no auto-gen
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else
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echo processing $dr
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macrodirs=`sed -n -e 's,AM_ACLOCAL_INCLUDE(\(.*\)),\1,gp' < $coin`
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( cd $dr
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aclocalinclude="$ACLOCAL_FLAGS"
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for k in $macrodirs; do
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if test -d $k; then
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aclocalinclude="$aclocalinclude -I $k"
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##else
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## echo "**Warning**: No such directory \`$k'. Ignored."
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fi
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done
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if grep "^AM_GNU_GETTEXT" configure.in >/dev/null; then
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if grep "sed.*POTFILES" configure.in >/dev/null; then
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: do nothing -- we still have an old unmodified configure.in
|
||||
else
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echo "Creating $dr/aclocal.m4 ..."
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test -r $dr/aclocal.m4 || touch $dr/aclocal.m4
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||||
echo "Running gettextize... Ignore non-fatal messages."
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||||
echo "no" | gettextize --force --copy
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||||
echo "Making $dr/aclocal.m4 writable ..."
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test -r $dr/aclocal.m4 && chmod u+w $dr/aclocal.m4
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||||
fi
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fi
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if grep "^AM_GNOME_GETTEXT" configure.in >/dev/null; then
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echo "Creating $dr/aclocal.m4 ..."
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test -r $dr/aclocal.m4 || touch $dr/aclocal.m4
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||||
echo "Running gettextize... Ignore non-fatal messages."
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||||
echo "no" | gettextize --force --copy
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||||
echo "Making $dr/aclocal.m4 writable ..."
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||||
test -r $dr/aclocal.m4 && chmod u+w $dr/aclocal.m4
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fi
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if grep "^AM_PROG_LIBTOOL" configure.in >/dev/null; then
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echo "Running libtoolize..."
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libtoolize --force --copy
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fi
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echo "Running aclocal $aclocalinclude ..."
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aclocal $aclocalinclude
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if grep "^AM_CONFIG_HEADER" configure.in >/dev/null; then
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echo "Running autoheader..."
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autoheader
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fi
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echo "Running automake --gnu $am_opt ..."
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automake --add-missing --gnu $am_opt
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echo "Running autoconf ..."
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autoconf
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)
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fi
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done
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#conf_flags="--enable-maintainer-mode --enable-compile-warnings" #--enable-iso-c
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if test x$NOCONFIGURE = x; then
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echo Running $srcdir/configure $conf_flags "$@" ...
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$srcdir/configure $conf_flags "$@" \
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&& echo Now type \`make\' to compile $PKG_NAME
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else
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echo Skipping configure process.
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fi
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43
tags/paradiseo-moeo-0.3/configure.in
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43
tags/paradiseo-moeo-0.3/configure.in
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AC_INIT(configure.in)
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AM_INIT_AUTOMAKE(moeo, 0.1)
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AC_ISC_POSIX
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AC_PROG_CXX
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AM_PROG_CC_STDC
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AC_HEADER_STDC
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AC_PROG_RANLIB
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AC_PROG_INSTALL
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AC_PROG_LN_S
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AC_PROG_MAKE_SET
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||||
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AC_C_CONST
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AC_C_INLINE
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AC_TYPE_SIZE_T
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AC_SUBST(EO_DIR)
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dnl EO
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AC_ARG_WITH(EOdir,
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--with-EOdir : Giving the path of the EO tree.,
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EO_DIR="$withval"
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if test ! -d $EO_DIR
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||||
then
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||||
echo ""
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||||
echo "# --with-EOdir Invalid directory $withval"
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||||
exit 1
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||||
fi,
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||||
echo ""
|
||||
echo "# You forgot to give the path of the EO tree !"
|
||||
echo "# Please write something like ... './configure --with-EOdir=\$HOME/eo'"
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exit 1
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)
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AC_OUTPUT([
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Makefile
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src/Makefile
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docs/Makefile
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tutorials/Makefile
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tutorials/lesson1/Makefile
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tutorials/lesson2/Makefile
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])
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5
tags/paradiseo-moeo-0.3/docs/Makefile.am
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5
tags/paradiseo-moeo-0.3/docs/Makefile.am
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doc:
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-@doxygen moeo.doxyfile
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clean-local:
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rm -rf html latex man
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53
tags/paradiseo-moeo-0.3/docs/index.h
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53
tags/paradiseo-moeo-0.3/docs/index.h
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/** @mainpage Welcome to ParadisEO-MOEO
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@section intro Introduction
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ParadisEO-MOEO is a white-box object-oriented generic framework dedicated to the flexible design of evolutionary multi-objective algorithms.
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This paradigm-free software embeds some features and techniques for Pareto-based resolution and
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aims to provide a set of classes allowing to ease and speed up the development of computationally efficient programs.
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It is based on a clear conceptual distinction between the solution methods and the multi-objective problems they are intended to solve.
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This separation confers a maximum design and code reuse.
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ParadisEO-MOEO provides a broad range of archive-related features (such as elitism or performance metrics)
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and the most common Pareto-based fitness assignment strategies (MOGA, NSGA, SPEA, IBEA and more).
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Furthermore, parallel and distributed models as well as hybridization mechanisms can be applied to an algorithm designed within ParadisEO-MOEO
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using the whole version of ParadisEO.
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@section tutorials Tutorials
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||||
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||||
Tutorials for ParadisEO-MOEO are available <a href="http://paradiseo.gforge.inria.fr/index.php?n=Paradiseo.UsersGuides">here</a>.
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||||
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||||
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@section install Installation
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||||
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||||
The installation procedure of the package is detailed in the <a
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||||
href="../../README">README</a> file in the top-directory of the source-tree.
|
||||
|
||||
|
||||
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||||
@section design Overall Design
|
||||
|
||||
For an introduction to the design of ParadisEO-MOEO,
|
||||
you can look at the <a href="http://paradiseo.gforge.inria.fr">ParadisEO website</a>.
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||||
*/
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||||
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||||
|
||||
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||||
/** @page webpages Related webpages
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||||
|
||||
- ParadisEO <a href="http://paradiseo.gforge.inria.fr">homepage</a>
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||||
- INRIA GForge <a href="http://gforge.inria.fr/projects/paradiseo/">project page</a>
|
||||
- <a href="../../README">README</a>
|
||||
- <a href="../../NEWS">NEWS</a>
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||||
*/
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||||
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// Local Variables:
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// coding: iso-8859-1
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// mode: C++
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// c-file-style: "Stroustrup"
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// fill-column: 80
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// End:
|
||||
237
tags/paradiseo-moeo-0.3/docs/moeo.doxyfile
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237
tags/paradiseo-moeo-0.3/docs/moeo.doxyfile
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@ -0,0 +1,237 @@
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|||
# Doxyfile 1.5.1
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||||
|
||||
#---------------------------------------------------------------------------
|
||||
# Project related configuration options
|
||||
#---------------------------------------------------------------------------
|
||||
PROJECT_NAME = ParadisEO-MOEO
|
||||
PROJECT_NUMBER = 1.0
|
||||
OUTPUT_DIRECTORY =
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CREATE_SUBDIRS = NO
|
||||
OUTPUT_LANGUAGE = English
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USE_WINDOWS_ENCODING = NO
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||||
BRIEF_MEMBER_DESC = YES
|
||||
REPEAT_BRIEF = YES
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||||
ABBREVIATE_BRIEF = "The $name class" \
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||||
"The $name widget" \
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||||
"The $name file" \
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||||
is \
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||||
provides \
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||||
specifies \
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||||
contains \
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||||
represents \
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||||
a \
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an \
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||||
the
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||||
ALWAYS_DETAILED_SEC = NO
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||||
INLINE_INHERITED_MEMB = NO
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||||
FULL_PATH_NAMES = NO
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||||
STRIP_FROM_PATH =
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||||
STRIP_FROM_INC_PATH =
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||||
SHORT_NAMES = NO
|
||||
JAVADOC_AUTOBRIEF = YES
|
||||
MULTILINE_CPP_IS_BRIEF = NO
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||||
DETAILS_AT_TOP = NO
|
||||
INHERIT_DOCS = YES
|
||||
SEPARATE_MEMBER_PAGES = NO
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||||
TAB_SIZE = 8
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||||
ALIASES =
|
||||
OPTIMIZE_OUTPUT_FOR_C = NO
|
||||
OPTIMIZE_OUTPUT_JAVA = NO
|
||||
BUILTIN_STL_SUPPORT = NO
|
||||
DISTRIBUTE_GROUP_DOC = NO
|
||||
SUBGROUPING = YES
|
||||
#---------------------------------------------------------------------------
|
||||
# Build related configuration options
|
||||
#---------------------------------------------------------------------------
|
||||
EXTRACT_ALL = NO
|
||||
EXTRACT_PRIVATE = YES
|
||||
EXTRACT_STATIC = YES
|
||||
EXTRACT_LOCAL_CLASSES = YES
|
||||
EXTRACT_LOCAL_METHODS = NO
|
||||
HIDE_UNDOC_MEMBERS = YES
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||||
HIDE_UNDOC_CLASSES = YES
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||||
HIDE_FRIEND_COMPOUNDS = NO
|
||||
HIDE_IN_BODY_DOCS = NO
|
||||
INTERNAL_DOCS = NO
|
||||
CASE_SENSE_NAMES = YES
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||||
HIDE_SCOPE_NAMES = NO
|
||||
SHOW_INCLUDE_FILES = YES
|
||||
INLINE_INFO = YES
|
||||
SORT_MEMBER_DOCS = NO
|
||||
SORT_BRIEF_DOCS = NO
|
||||
SORT_BY_SCOPE_NAME = NO
|
||||
GENERATE_TODOLIST = YES
|
||||
GENERATE_TESTLIST = YES
|
||||
GENERATE_BUGLIST = YES
|
||||
GENERATE_DEPRECATEDLIST= YES
|
||||
ENABLED_SECTIONS =
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||||
MAX_INITIALIZER_LINES = 30
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||||
SHOW_USED_FILES = YES
|
||||
SHOW_DIRECTORIES = NO
|
||||
FILE_VERSION_FILTER =
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||||
#---------------------------------------------------------------------------
|
||||
# configuration options related to warning and progress messages
|
||||
#---------------------------------------------------------------------------
|
||||
QUIET = YES
|
||||
WARNINGS = YES
|
||||
WARN_IF_UNDOCUMENTED = YES
|
||||
WARN_IF_DOC_ERROR = YES
|
||||
WARN_NO_PARAMDOC = NO
|
||||
WARN_FORMAT = "$file:$line: $text"
|
||||
WARN_LOGFILE =
|
||||
#---------------------------------------------------------------------------
|
||||
# configuration options related to the input files
|
||||
#---------------------------------------------------------------------------
|
||||
INPUT = . ../src
|
||||
FILE_PATTERNS = *.cpp \
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||||
*.h \
|
||||
NEWS README
|
||||
RECURSIVE = YES
|
||||
EXCLUDE =
|
||||
EXCLUDE_SYMLINKS = NO
|
||||
EXCLUDE_PATTERNS =
|
||||
EXAMPLE_PATH =
|
||||
EXAMPLE_PATTERNS = *
|
||||
EXAMPLE_RECURSIVE = NO
|
||||
IMAGE_PATH =
|
||||
INPUT_FILTER =
|
||||
FILTER_PATTERNS =
|
||||
FILTER_SOURCE_FILES = NO
|
||||
#---------------------------------------------------------------------------
|
||||
# configuration options related to source browsing
|
||||
#---------------------------------------------------------------------------
|
||||
SOURCE_BROWSER = YES
|
||||
INLINE_SOURCES = NO
|
||||
STRIP_CODE_COMMENTS = YES
|
||||
REFERENCED_BY_RELATION = YES
|
||||
REFERENCES_RELATION = YES
|
||||
REFERENCES_LINK_SOURCE = YES
|
||||
USE_HTAGS = NO
|
||||
VERBATIM_HEADERS = YES
|
||||
#---------------------------------------------------------------------------
|
||||
# configuration options related to the alphabetical class index
|
||||
#---------------------------------------------------------------------------
|
||||
ALPHABETICAL_INDEX = YES
|
||||
COLS_IN_ALPHA_INDEX = 3
|
||||
IGNORE_PREFIX = moeo
|
||||
#---------------------------------------------------------------------------
|
||||
# configuration options related to the HTML output
|
||||
#---------------------------------------------------------------------------
|
||||
GENERATE_HTML = YES
|
||||
HTML_OUTPUT = html
|
||||
HTML_FILE_EXTENSION = .html
|
||||
HTML_HEADER =
|
||||
HTML_FOOTER =
|
||||
HTML_STYLESHEET =
|
||||
HTML_ALIGN_MEMBERS = YES
|
||||
GENERATE_HTMLHELP = NO
|
||||
CHM_FILE =
|
||||
HHC_LOCATION =
|
||||
GENERATE_CHI = NO
|
||||
BINARY_TOC = NO
|
||||
TOC_EXPAND = NO
|
||||
DISABLE_INDEX = NO
|
||||
ENUM_VALUES_PER_LINE = 4
|
||||
GENERATE_TREEVIEW = YES
|
||||
TREEVIEW_WIDTH = 250
|
||||
#---------------------------------------------------------------------------
|
||||
# configuration options related to the LaTeX output
|
||||
#---------------------------------------------------------------------------
|
||||
GENERATE_LATEX = YES
|
||||
LATEX_OUTPUT = latex
|
||||
LATEX_CMD_NAME = latex
|
||||
MAKEINDEX_CMD_NAME = makeindex
|
||||
COMPACT_LATEX = NO
|
||||
PAPER_TYPE = a4wide
|
||||
EXTRA_PACKAGES =
|
||||
LATEX_HEADER =
|
||||
PDF_HYPERLINKS = NO
|
||||
USE_PDFLATEX = NO
|
||||
LATEX_BATCHMODE = NO
|
||||
LATEX_HIDE_INDICES = NO
|
||||
#---------------------------------------------------------------------------
|
||||
# configuration options related to the RTF output
|
||||
#---------------------------------------------------------------------------
|
||||
GENERATE_RTF = NO
|
||||
RTF_OUTPUT = rtf
|
||||
COMPACT_RTF = NO
|
||||
RTF_HYPERLINKS = NO
|
||||
RTF_STYLESHEET_FILE =
|
||||
RTF_EXTENSIONS_FILE =
|
||||
#---------------------------------------------------------------------------
|
||||
# configuration options related to the man page output
|
||||
#---------------------------------------------------------------------------
|
||||
GENERATE_MAN = YES
|
||||
MAN_OUTPUT = man
|
||||
MAN_EXTENSION = .3
|
||||
MAN_LINKS = NO
|
||||
#---------------------------------------------------------------------------
|
||||
# configuration options related to the XML output
|
||||
#---------------------------------------------------------------------------
|
||||
GENERATE_XML = NO
|
||||
XML_OUTPUT = xml
|
||||
XML_SCHEMA =
|
||||
XML_DTD =
|
||||
XML_PROGRAMLISTING = YES
|
||||
#---------------------------------------------------------------------------
|
||||
# configuration options for the AutoGen Definitions output
|
||||
#---------------------------------------------------------------------------
|
||||
GENERATE_AUTOGEN_DEF = NO
|
||||
#---------------------------------------------------------------------------
|
||||
# configuration options related to the Perl module output
|
||||
#---------------------------------------------------------------------------
|
||||
GENERATE_PERLMOD = NO
|
||||
PERLMOD_LATEX = NO
|
||||
PERLMOD_PRETTY = YES
|
||||
PERLMOD_MAKEVAR_PREFIX =
|
||||
#---------------------------------------------------------------------------
|
||||
# Configuration options related to the preprocessor
|
||||
#---------------------------------------------------------------------------
|
||||
ENABLE_PREPROCESSING = YES
|
||||
MACRO_EXPANSION = NO
|
||||
EXPAND_ONLY_PREDEF = NO
|
||||
SEARCH_INCLUDES = YES
|
||||
INCLUDE_PATH =
|
||||
INCLUDE_FILE_PATTERNS =
|
||||
PREDEFINED =
|
||||
EXPAND_AS_DEFINED =
|
||||
SKIP_FUNCTION_MACROS = YES
|
||||
#---------------------------------------------------------------------------
|
||||
# Configuration::additions related to external references
|
||||
#---------------------------------------------------------------------------
|
||||
TAGFILES = ../../paradiseo-eo/doc/eo.doxytag=../../../paradiseo-eo/doc/html
|
||||
GENERATE_TAGFILE = moeo.doxytag
|
||||
ALLEXTERNALS = NO
|
||||
EXTERNAL_GROUPS = YES
|
||||
PERL_PATH = /usr/bin/perl
|
||||
#---------------------------------------------------------------------------
|
||||
# Configuration options related to the dot tool
|
||||
#---------------------------------------------------------------------------
|
||||
CLASS_DIAGRAMS = YES
|
||||
HIDE_UNDOC_RELATIONS = YES
|
||||
HAVE_DOT = NO
|
||||
CLASS_GRAPH = YES
|
||||
COLLABORATION_GRAPH = YES
|
||||
GROUP_GRAPHS = YES
|
||||
UML_LOOK = NO
|
||||
TEMPLATE_RELATIONS = NO
|
||||
INCLUDE_GRAPH = YES
|
||||
INCLUDED_BY_GRAPH = YES
|
||||
CALL_GRAPH = NO
|
||||
CALLER_GRAPH = NO
|
||||
GRAPHICAL_HIERARCHY = YES
|
||||
DIRECTORY_GRAPH = YES
|
||||
DOT_IMAGE_FORMAT = png
|
||||
DOT_PATH =
|
||||
DOTFILE_DIRS =
|
||||
MAX_DOT_GRAPH_WIDTH = 1024
|
||||
MAX_DOT_GRAPH_HEIGHT = 1024
|
||||
MAX_DOT_GRAPH_DEPTH = 0
|
||||
DOT_TRANSPARENT = NO
|
||||
DOT_MULTI_TARGETS = NO
|
||||
GENERATE_LEGEND = YES
|
||||
DOT_CLEANUP = YES
|
||||
#---------------------------------------------------------------------------
|
||||
# Configuration::additions related to the search engine
|
||||
#---------------------------------------------------------------------------
|
||||
SEARCHENGINE = YES
|
||||
291
tags/paradiseo-moeo-0.3/src/MOEO.h
Normal file
291
tags/paradiseo-moeo-0.3/src/MOEO.h
Normal file
|
|
@ -0,0 +1,291 @@
|
|||
// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
// MOEO.h
|
||||
// (c) OPAC Team (LIFL), Dolphin Project (INRIA), 2007
|
||||
/*
|
||||
This library...
|
||||
|
||||
Contact: paradiseo-help@lists.gforge.inria.fr, http://paradiseo.gforge.inria.fr
|
||||
*/
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
#ifndef MOEO_H_
|
||||
#define MOEO_H_
|
||||
|
||||
#include <iostream>
|
||||
#include <stdexcept>
|
||||
#include <string>
|
||||
#include <EO.h>
|
||||
|
||||
/**
|
||||
* Base class allowing to represent a solution (an individual) for multi-objective optimization.
|
||||
* The template argument MOEOObjectiveVector allows to represent the solution in the objective space (it can be a moeoObjectiveVector object).
|
||||
* The template argument MOEOFitness is an object reflecting the quality of the solution in term of convergence (the fitness of a solution is always to be maximized).
|
||||
* The template argument MOEODiversity is an object reflecting the quality of the solution in term of diversity (the diversity of a solution is always to be maximized).
|
||||
* All template arguments must have a void and a copy constructor.
|
||||
* Using some specific representations, you will have to define a copy constructor if the default one is not what you want.
|
||||
* In the same cases, you will also have to define the affectation operator (operator=).
|
||||
* Then, you will explicitly have to call the parent copy constructor and the parent affectation operator at the beginning of the corresponding implementation.
|
||||
* Besides, note that, contrary to the mono-objective case (and to EO) where the fitness value of a solution is confused with its objective value,
|
||||
* the fitness value differs of the objectives values in the multi-objective case.
|
||||
*/
|
||||
template < class MOEOObjectiveVector, class MOEOFitness, class MOEODiversity >
|
||||
class MOEO : public EO < MOEOObjectiveVector >
|
||||
{
|
||||
public:
|
||||
|
||||
/** the objective vector type of a solution */
|
||||
typedef MOEOObjectiveVector ObjectiveVector;
|
||||
|
||||
/** the fitness type of a solution */
|
||||
typedef MOEOFitness Fitness;
|
||||
|
||||
/** the diversity type of a solution */
|
||||
typedef MOEODiversity Diversity;
|
||||
|
||||
|
||||
/**
|
||||
* Ctor
|
||||
*/
|
||||
MOEO()
|
||||
{
|
||||
// default values for every parameters
|
||||
objectiveVectorValue = ObjectiveVector();
|
||||
fitnessValue = Fitness();
|
||||
diversityValue = Diversity();
|
||||
// invalidate all
|
||||
invalidate();
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* Virtual dtor
|
||||
*/
|
||||
virtual ~MOEO() {};
|
||||
|
||||
|
||||
/**
|
||||
* Returns the objective vector of the current solution
|
||||
*/
|
||||
ObjectiveVector objectiveVector() const
|
||||
{
|
||||
if ( invalidObjectiveVector() )
|
||||
{
|
||||
throw std::runtime_error("invalid objective vector");
|
||||
}
|
||||
return objectiveVectorValue;
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* Sets the objective vector of the current solution
|
||||
* @param _objectiveVectorValue the new objective vector
|
||||
*/
|
||||
void objectiveVector(const ObjectiveVector & _objectiveVectorValue)
|
||||
{
|
||||
objectiveVectorValue = _objectiveVectorValue;
|
||||
invalidObjectiveVectorValue = false;
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* Sets the objective vector as invalid
|
||||
*/
|
||||
void invalidateObjectiveVector()
|
||||
{
|
||||
invalidObjectiveVectorValue = true;
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* Returns true if the objective vector is invalid, false otherwise
|
||||
*/
|
||||
bool invalidObjectiveVector() const
|
||||
{
|
||||
return invalidObjectiveVectorValue;
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* Returns the fitness value of the current solution
|
||||
*/
|
||||
Fitness fitness() const
|
||||
{
|
||||
if ( invalidFitness() )
|
||||
{
|
||||
throw std::runtime_error("invalid fitness (MOEO)");
|
||||
}
|
||||
return fitnessValue;
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* Sets the fitness value of the current solution
|
||||
* @param _fitnessValue the new fitness value
|
||||
*/
|
||||
void fitness(const Fitness & _fitnessValue)
|
||||
{
|
||||
fitnessValue = _fitnessValue;
|
||||
invalidFitnessValue = false;
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* Sets the fitness value as invalid
|
||||
*/
|
||||
void invalidateFitness()
|
||||
{
|
||||
invalidFitnessValue = true;
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* Returns true if the fitness value is invalid, false otherwise
|
||||
*/
|
||||
bool invalidFitness() const
|
||||
{
|
||||
return invalidFitnessValue;
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* Returns the diversity value of the current solution
|
||||
*/
|
||||
Diversity diversity() const
|
||||
{
|
||||
if ( invalidDiversity() )
|
||||
{
|
||||
throw std::runtime_error("invalid diversity");
|
||||
}
|
||||
return diversityValue;
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* Sets the diversity value of the current solution
|
||||
* @param _diversityValue the new diversity value
|
||||
*/
|
||||
void diversity(const Diversity & _diversityValue)
|
||||
{
|
||||
diversityValue = _diversityValue;
|
||||
invalidDiversityValue = false;
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* Sets the diversity value as invalid
|
||||
*/
|
||||
void invalidateDiversity()
|
||||
{
|
||||
invalidDiversityValue = true;
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* Returns true if the diversity value is invalid, false otherwise
|
||||
*/
|
||||
bool invalidDiversity() const
|
||||
{
|
||||
return invalidDiversityValue;
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* Sets the objective vector, the fitness value and the diversity value as invalid
|
||||
*/
|
||||
void invalidate()
|
||||
{
|
||||
invalidateObjectiveVector();
|
||||
invalidateFitness();
|
||||
invalidateDiversity();
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* Returns true if the fitness value is invalid, false otherwise
|
||||
*/
|
||||
bool invalid() const
|
||||
{
|
||||
return invalidObjectiveVector();
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* Returns true if the objective vector of the current solution is smaller than the objective vector of _other on the first objective,
|
||||
* then on the second, and so on (can be usefull for sorting/printing).
|
||||
* You should implement another function in the sub-class of MOEO to have another sorting mecanism.
|
||||
* @param _other the other MOEO object to compare with
|
||||
*/
|
||||
bool operator<(const MOEO & _other) const
|
||||
{
|
||||
return objectiveVector() < _other.objectiveVector();
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* Return the class id (the class name as a std::string)
|
||||
*/
|
||||
virtual std::string className() const
|
||||
{
|
||||
return "MOEO";
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* Writing object
|
||||
* @param _os output stream
|
||||
*/
|
||||
virtual void printOn(std::ostream & _os) const
|
||||
{
|
||||
if ( invalidObjectiveVector() )
|
||||
{
|
||||
_os << "INVALID\t";
|
||||
}
|
||||
else
|
||||
{
|
||||
_os << objectiveVectorValue << '\t';
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* Reading object
|
||||
* @param _is input stream
|
||||
*/
|
||||
virtual void readFrom(std::istream & _is)
|
||||
{
|
||||
std::string objectiveVector_str;
|
||||
int pos = _is.tellg();
|
||||
_is >> objectiveVector_str;
|
||||
if (objectiveVector_str == "INVALID")
|
||||
{
|
||||
invalidateObjectiveVector();
|
||||
}
|
||||
else
|
||||
{
|
||||
invalidObjectiveVectorValue = false;
|
||||
_is.seekg(pos); // rewind
|
||||
_is >> objectiveVectorValue;
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
private:
|
||||
|
||||
/** the objective vector of this solution */
|
||||
ObjectiveVector objectiveVectorValue;
|
||||
/** true if the objective vector is invalid */
|
||||
bool invalidObjectiveVectorValue;
|
||||
/** the fitness value of this solution */
|
||||
Fitness fitnessValue;
|
||||
/** true if the fitness value is invalid */
|
||||
bool invalidFitnessValue;
|
||||
/** the diversity value of this solution */
|
||||
Diversity diversityValue;
|
||||
/** true if the diversity value is invalid */
|
||||
bool invalidDiversityValue;
|
||||
|
||||
};
|
||||
|
||||
#endif /*MOEO_H_*/
|
||||
1
tags/paradiseo-moeo-0.3/src/Makefile.am
Normal file
1
tags/paradiseo-moeo-0.3/src/Makefile.am
Normal file
|
|
@ -0,0 +1 @@
|
|||
# Nothing to compile !
|
||||
227
tags/paradiseo-moeo-0.3/src/distance/moeoDistance.h
Normal file
227
tags/paradiseo-moeo-0.3/src/distance/moeoDistance.h
Normal file
|
|
@ -0,0 +1,227 @@
|
|||
// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
// moeoDistance.h
|
||||
// (c) OPAC Team (LIFL), Dolphin Project (INRIA), 2007
|
||||
/*
|
||||
This library...
|
||||
|
||||
Contact: paradiseo-help@lists.gforge.inria.fr, http://paradiseo.gforge.inria.fr
|
||||
*/
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
#ifndef MOEODISTANCE_H_
|
||||
#define MOEODISTANCE_H_
|
||||
|
||||
#include <math.h>
|
||||
#include <eoFunctor.h>
|
||||
#include <utils/eoRealBounds.h>
|
||||
|
||||
/**
|
||||
* The base class for distance computation.
|
||||
*/
|
||||
template < class MOEOT , class Type >
|
||||
class moeoDistance : public eoBF < const MOEOT &, const MOEOT &, const Type >
|
||||
{
|
||||
public:
|
||||
|
||||
|
||||
/**
|
||||
* Nothing to do
|
||||
* @param _pop the population
|
||||
*/
|
||||
virtual void setup(const eoPop < MOEOT > & _pop)
|
||||
{}
|
||||
|
||||
/**
|
||||
* Nothing to do
|
||||
* @param _min lower bound
|
||||
* @param _max upper bound
|
||||
* @param _obj the objective index
|
||||
*/
|
||||
virtual void setup(double _min, double _max, unsigned _obj)
|
||||
{}
|
||||
|
||||
|
||||
/**
|
||||
* Nothing to do
|
||||
* @param _realInterval the eoRealInterval object
|
||||
* @param _obj the objective index
|
||||
*/
|
||||
virtual void setup(eoRealInterval _realInterval, unsigned _obj)
|
||||
{}
|
||||
|
||||
};
|
||||
|
||||
|
||||
/**
|
||||
* The base class for double distance computation with normalized objective values (i.e. between 0 and 1).
|
||||
*/
|
||||
template < class MOEOT , class Type = double >
|
||||
class moeoNormalizedDistance : public moeoDistance < MOEOT , Type >
|
||||
{
|
||||
public:
|
||||
|
||||
/** the objective vector type of the solutions */
|
||||
typedef typename MOEOT::ObjectiveVector ObjectiveVector;
|
||||
|
||||
|
||||
/**
|
||||
* Default ctr
|
||||
*/
|
||||
moeoNormalizedDistance()
|
||||
{
|
||||
bounds.resize(ObjectiveVector::Traits::nObjectives());
|
||||
// initialize bounds in case someone does not want to use them
|
||||
for (unsigned i=0; i<ObjectiveVector::Traits::nObjectives(); i++)
|
||||
{
|
||||
bounds[i] = eoRealInterval(0,1);
|
||||
}
|
||||
}
|
||||
|
||||
/**
|
||||
* Returns a very small value that can be used to avoid extreme cases (where the min bound == the max bound)
|
||||
*/
|
||||
static double tiny()
|
||||
{
|
||||
return 1e-6;
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* Sets the lower and the upper bounds for every objective using extremes values for solutions contained in the population _pop
|
||||
* @param _pop the population
|
||||
*/
|
||||
virtual void setup(const eoPop < MOEOT > & _pop)
|
||||
{
|
||||
double min, max;
|
||||
for (unsigned i=0; i<ObjectiveVector::Traits::nObjectives(); i++)
|
||||
{
|
||||
min = _pop[0].objectiveVector()[i];
|
||||
max = _pop[0].objectiveVector()[i];
|
||||
for (unsigned j=1; j<_pop.size(); j++)
|
||||
{
|
||||
min = std::min(min, _pop[j].objectiveVector()[i]);
|
||||
max = std::max(max, _pop[j].objectiveVector()[i]);
|
||||
}
|
||||
// setting of the bounds for the objective i
|
||||
setup(min, max, i);
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* Sets the lower bound (_min) and the upper bound (_max) for the objective _obj
|
||||
* @param _min lower bound
|
||||
* @param _max upper bound
|
||||
* @param _obj the objective index
|
||||
*/
|
||||
virtual void setup(double _min, double _max, unsigned _obj)
|
||||
{
|
||||
if (_min == _max)
|
||||
{
|
||||
_min -= tiny();
|
||||
_max += tiny();
|
||||
}
|
||||
bounds[_obj] = eoRealInterval(_min, _max);
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* Sets the lower bound and the upper bound for the objective _obj using a eoRealInterval object
|
||||
* @param _realInterval the eoRealInterval object
|
||||
* @param _obj the objective index
|
||||
*/
|
||||
virtual void setup(eoRealInterval _realInterval, unsigned _obj)
|
||||
{
|
||||
bounds[_obj] = _realInterval;
|
||||
}
|
||||
|
||||
|
||||
protected:
|
||||
|
||||
/** the bounds for every objective (bounds[i] = bounds for the objective i) */
|
||||
std::vector < eoRealInterval > bounds;
|
||||
|
||||
};
|
||||
|
||||
|
||||
/**
|
||||
* A class allowing to compute an euclidian distance between two solutions in the objective space with normalized objective values (i.e. between 0 and 1).
|
||||
* A distance value then lies between 0 and sqrt(nObjectives).
|
||||
*/
|
||||
template < class MOEOT >
|
||||
class moeoEuclideanDistance : public moeoNormalizedDistance < MOEOT >
|
||||
{
|
||||
public:
|
||||
|
||||
/** the objective vector type of the solutions */
|
||||
typedef typename MOEOT::ObjectiveVector ObjectiveVector;
|
||||
|
||||
|
||||
/**
|
||||
* Returns the euclidian distance between _moeo1 and _moeo2 in the objective space
|
||||
* @param _moeo1 the first solution
|
||||
* @param _moeo2 the second solution
|
||||
*/
|
||||
const double operator()(const MOEOT & _moeo1, const MOEOT & _moeo2)
|
||||
{
|
||||
double result = 0.0;
|
||||
double tmp1, tmp2;
|
||||
for (unsigned i=0; i<ObjectiveVector::nObjectives(); i++)
|
||||
{
|
||||
tmp1 = (_moeo1.objectiveVector()[i] - bounds[i].minimum()) / bounds[i].range();
|
||||
tmp2 = (_moeo2.objectiveVector()[i] - bounds[i].minimum()) / bounds[i].range();
|
||||
result += (tmp1-tmp2) * (tmp1-tmp2);
|
||||
}
|
||||
return sqrt(result);
|
||||
}
|
||||
|
||||
|
||||
private:
|
||||
|
||||
/** the bounds for every objective */
|
||||
using moeoNormalizedDistance < MOEOT > :: bounds;
|
||||
|
||||
};
|
||||
|
||||
/**
|
||||
* A class allowing to compute the Manhattan distance between two solutions in the objective space normalized objective values (i.e. between 0 and 1).
|
||||
* A distance value then lies between 0 and nObjectives.
|
||||
*/
|
||||
template < class MOEOT >
|
||||
class moeoManhattanDistance : public moeoNormalizedDistance < MOEOT >
|
||||
{
|
||||
public:
|
||||
|
||||
/** the objective vector type of the solutions */
|
||||
typedef typename MOEOT::ObjectiveVector ObjectiveVector;
|
||||
|
||||
|
||||
/**
|
||||
* Returns the Manhattan distance between _moeo1 and _moeo2 in the objective space
|
||||
* @param _moeo1 the first solution
|
||||
* @param _moeo2 the second solution
|
||||
*/
|
||||
const double operator()(const MOEOT & _moeo1, const MOEOT & _moeo2)
|
||||
{
|
||||
double result = 0.0;
|
||||
double tmp1, tmp2;
|
||||
for (unsigned i=0; i<ObjectiveVector::nObjectives(); i++)
|
||||
{
|
||||
tmp1 = (_moeo1.objectiveVector()[i] - bounds[i].minimum()) / bounds[i].range();
|
||||
tmp2 = (_moeo2.objectiveVector()[i] - bounds[i].minimum()) / bounds[i].range();
|
||||
result += fabs(tmp1-tmp2);
|
||||
}
|
||||
return result;
|
||||
}
|
||||
|
||||
|
||||
private:
|
||||
|
||||
/** the bounds for every objective */
|
||||
using moeoNormalizedDistance < MOEOT > :: bounds;
|
||||
|
||||
};
|
||||
|
||||
#endif /*MOEODISTANCE_H_*/
|
||||
75
tags/paradiseo-moeo-0.3/src/distance/moeoDistanceMatrix.h
Normal file
75
tags/paradiseo-moeo-0.3/src/distance/moeoDistanceMatrix.h
Normal file
|
|
@ -0,0 +1,75 @@
|
|||
// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
// moeoDistanceMatrix.h
|
||||
// (c) OPAC Team (LIFL), Dolphin Project (INRIA), 2007
|
||||
/*
|
||||
This library...
|
||||
|
||||
Contact: paradiseo-help@lists.gforge.inria.fr, http://paradiseo.gforge.inria.fr
|
||||
*/
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
#ifndef MOEODISTANCEMATRIX_H_
|
||||
#define MOEODISTANCEMATRIX_H_
|
||||
|
||||
#include <eoFunctor.h>
|
||||
#include <distance/moeoDistance.h>
|
||||
|
||||
/**
|
||||
* A matrix to compute distances between every pair of individuals contained in a population.
|
||||
*/
|
||||
template < class MOEOT , class Type >
|
||||
class moeoDistanceMatrix : public eoUF < const eoPop < MOEOT > &, void > , public std::vector< std::vector < Type > >
|
||||
{
|
||||
public:
|
||||
|
||||
using std::vector< std::vector < Type > > :: size;
|
||||
using std::vector< std::vector < Type > > :: operator[];
|
||||
|
||||
|
||||
/**
|
||||
* Ctor
|
||||
* @param _size size for every dimension of the matrix
|
||||
* @param _distance the distance to use
|
||||
*/
|
||||
moeoDistanceMatrix (unsigned _size, moeoDistance < MOEOT , Type > & _distance) : distance(_distance)
|
||||
{
|
||||
this->resize(_size);
|
||||
for (unsigned i=0; i<_size; i++)
|
||||
{
|
||||
this->operator[](i).resize(_size);
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* Sets the distance between every pair of individuals contained in the population _pop
|
||||
* @param _pop the population
|
||||
*/
|
||||
void operator()(const eoPop < MOEOT > & _pop)
|
||||
{
|
||||
// 1 - setup the bounds (if necessary)
|
||||
distance.setup(_pop);
|
||||
// 2 - compute distances
|
||||
this->operator[](0).operator[](0) = Type();
|
||||
for (unsigned i=0; i<size(); i++)
|
||||
{
|
||||
this->operator[](i).operator[](i) = Type();
|
||||
for (unsigned j=0; j<i; j++)
|
||||
{
|
||||
this->operator[](i).operator[](j) = distance(_pop[i], _pop[j]);
|
||||
this->operator[](j).operator[](i) = this->operator[](i).operator[](j);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
private:
|
||||
|
||||
/** the distance to use */
|
||||
moeoDistance < MOEOT , Type > & distance;
|
||||
|
||||
};
|
||||
|
||||
#endif /*MOEODISTANCEMATRIX_H_*/
|
||||
176
tags/paradiseo-moeo-0.3/src/do/make_checkpoint_moeo.h
Executable file
176
tags/paradiseo-moeo-0.3/src/do/make_checkpoint_moeo.h
Executable file
|
|
@ -0,0 +1,176 @@
|
|||
// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
// make_checkpoint_moeo.h
|
||||
// (c) OPAC Team (LIFL), Dolphin Project (INRIA), 2007
|
||||
/*
|
||||
This library...
|
||||
|
||||
Contact: paradiseo-help@lists.gforge.inria.fr, http://paradiseo.gforge.inria.fr
|
||||
*/
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
#ifndef MAKE_CHECKPOINT_MOEO_H_
|
||||
#define MAKE_CHECKPOINT_MOEO_H_
|
||||
|
||||
#include <stdlib.h>
|
||||
#include <sstream>
|
||||
#include <eoContinue.h>
|
||||
#include <eoEvalFuncCounter.h>
|
||||
#include <utils/checkpointing>
|
||||
#include <utils/selectors.h>
|
||||
#include <utils/eoParser.h>
|
||||
#include <utils/eoState.h>
|
||||
#include <moeoArchiveUpdater.h>
|
||||
#include <moeoArchiveObjectiveVectorSavingUpdater.h>
|
||||
#include <metric/moeoBinaryMetricSavingUpdater.h>
|
||||
#include <metric/moeoContributionMetric.h>
|
||||
#include <metric/moeoEntropyMetric.h>
|
||||
|
||||
bool testDirRes(std::string _dirName, bool _erase);
|
||||
|
||||
/**
|
||||
* This functions allows to build an eoCheckPoint for multi-objective optimization from the parser (partly taken from make_checkpoint_pareto.h)
|
||||
* @param _parser the parser
|
||||
* @param _state to store allocated objects
|
||||
* @param _eval the funtions evaluator
|
||||
* @param _continue the stopping crietria
|
||||
* @param _pop the population
|
||||
* @param _archive the archive of non-dominated solutions
|
||||
*/
|
||||
template < class MOEOT >
|
||||
eoCheckPoint < MOEOT > & do_make_checkpoint_moeo (eoParser & _parser, eoState & _state, eoEvalFuncCounter < MOEOT > & _eval, eoContinue < MOEOT > & _continue, eoPop < MOEOT > & _pop, moeoArchive < MOEOT > & _archive)
|
||||
{
|
||||
eoCheckPoint < MOEOT > & checkpoint = _state.storeFunctor(new eoCheckPoint < MOEOT > (_continue));
|
||||
/* the objective vector type */
|
||||
typedef typename MOEOT::ObjectiveVector ObjectiveVector;
|
||||
|
||||
///////////////////
|
||||
// Counters
|
||||
//////////////////
|
||||
// is nb Eval to be used as counter?
|
||||
//bool useEval = _parser.getORcreateParam(true, "useEval", "Use nb of eval. as counter (vs nb of gen.)", '\0', "Output").value();
|
||||
// Create anyway a generation-counter parameter
|
||||
eoValueParam<unsigned> *generationCounter = new eoValueParam<unsigned>(0, "Gen.");
|
||||
// Create an incrementor (sub-class of eoUpdater).
|
||||
eoIncrementor<unsigned> & increment = _state.storeFunctor( new eoIncrementor<unsigned>(generationCounter->value()) );
|
||||
// Add it to the checkpoint
|
||||
checkpoint.add(increment);
|
||||
// dir for DISK output
|
||||
std::string & dirName = _parser.getORcreateParam(std::string("Res"), "resDir", "Directory to store DISK outputs", '\0', "Output").value();
|
||||
// shoudl we empty it if exists
|
||||
eoValueParam<bool>& eraseParam = _parser.getORcreateParam(true, "eraseDir", "erase files in dirName if any", '\0', "Output");
|
||||
bool dirOK = false; // not tested yet
|
||||
|
||||
// Dump of the whole population
|
||||
//-----------------------------
|
||||
bool printPop = _parser.getORcreateParam(false, "printPop", "Print sorted pop. every gen.", '\0', "Output").value();
|
||||
eoSortedPopStat<MOEOT> * popStat;
|
||||
if ( printPop ) // we do want pop dump
|
||||
{
|
||||
popStat = & _state.storeFunctor(new eoSortedPopStat<MOEOT>);
|
||||
checkpoint.add(*popStat);
|
||||
}
|
||||
|
||||
//////////////////////////////////
|
||||
// State savers
|
||||
//////////////////////////////
|
||||
// feed the state to state savers
|
||||
// save state every N generation
|
||||
eoValueParam<unsigned>& saveFrequencyParam = _parser.createParam(unsigned(0), "saveFrequency", "Save every F generation (0 = only final state, absent = never)", '\0', "Persistence" );
|
||||
if (_parser.isItThere(saveFrequencyParam))
|
||||
{
|
||||
// first make sure dirName is OK
|
||||
if (! dirOK )
|
||||
dirOK = testDirRes(dirName, eraseParam.value()); // TRUE
|
||||
unsigned freq = (saveFrequencyParam.value()>0 ? saveFrequencyParam.value() : UINT_MAX );
|
||||
#ifdef _MSVC
|
||||
std::string stmp = dirName + "\generations";
|
||||
#else
|
||||
std::string stmp = dirName + "/generations";
|
||||
#endif
|
||||
eoCountedStateSaver *stateSaver1 = new eoCountedStateSaver(freq, _state, stmp);
|
||||
_state.storeFunctor(stateSaver1);
|
||||
checkpoint.add(*stateSaver1);
|
||||
}
|
||||
// save state every T seconds
|
||||
eoValueParam<unsigned>& saveTimeIntervalParam = _parser.getORcreateParam(unsigned(0), "saveTimeInterval", "Save every T seconds (0 or absent = never)", '\0',"Persistence" );
|
||||
if (_parser.isItThere(saveTimeIntervalParam) && saveTimeIntervalParam.value()>0)
|
||||
{
|
||||
// first make sure dirName is OK
|
||||
if (! dirOK )
|
||||
dirOK = testDirRes(dirName, eraseParam.value()); // TRUE
|
||||
#ifdef _MSVC
|
||||
std::string stmp = dirName + "\time";
|
||||
#else
|
||||
std::string stmp = dirName + "/time";
|
||||
#endif
|
||||
eoTimedStateSaver *stateSaver2 = new eoTimedStateSaver(saveTimeIntervalParam.value(), _state, stmp);
|
||||
_state.storeFunctor(stateSaver2);
|
||||
checkpoint.add(*stateSaver2);
|
||||
}
|
||||
|
||||
///////////////////
|
||||
// Archive
|
||||
//////////////////
|
||||
// update the archive every generation
|
||||
bool updateArch = _parser.getORcreateParam(true, "updateArch", "Update the archive at each gen.", '\0', "Evolution Engine").value();
|
||||
if (updateArch)
|
||||
{
|
||||
moeoArchiveUpdater < MOEOT > * updater = new moeoArchiveUpdater < MOEOT > (_archive, _pop);
|
||||
_state.storeFunctor(updater);
|
||||
checkpoint.add(*updater);
|
||||
}
|
||||
// store the objective vectors contained in the archive every generation
|
||||
bool storeArch = _parser.getORcreateParam(false, "storeArch", "Store the archive's objective vectors at each gen.", '\0', "Output").value();
|
||||
if (storeArch)
|
||||
{
|
||||
if (! dirOK )
|
||||
dirOK = testDirRes(dirName, eraseParam.value()); // TRUE
|
||||
#ifdef _MSVC
|
||||
std::string stmp = dirName + "\arch";
|
||||
#else
|
||||
std::string stmp = dirName + "/arch";
|
||||
#endif
|
||||
moeoArchiveObjectiveVectorSavingUpdater < MOEOT > * save_updater = new moeoArchiveObjectiveVectorSavingUpdater < MOEOT > (_archive, stmp);
|
||||
_state.storeFunctor(save_updater);
|
||||
checkpoint.add(*save_updater);
|
||||
}
|
||||
// store the contribution of the non-dominated solutions
|
||||
bool cont = _parser.getORcreateParam(false, "contribution", "Store the contribution of the archive at each gen.", '\0', "Output").value();
|
||||
if (cont)
|
||||
{
|
||||
if (! dirOK )
|
||||
dirOK = testDirRes(dirName, eraseParam.value()); // TRUE
|
||||
#ifdef _MSVC
|
||||
std::string stmp = dirName + "\contribution";
|
||||
#else
|
||||
std::string stmp = dirName + "/contribution";
|
||||
#endif
|
||||
moeoContributionMetric < ObjectiveVector > * contribution = new moeoContributionMetric < ObjectiveVector >;
|
||||
moeoBinaryMetricSavingUpdater < MOEOT > * contribution_updater = new moeoBinaryMetricSavingUpdater < MOEOT > (*contribution, _archive, stmp);
|
||||
_state.storeFunctor(contribution_updater);
|
||||
checkpoint.add(*contribution_updater);
|
||||
}
|
||||
// store the entropy of the non-dominated solutions
|
||||
bool ent = _parser.getORcreateParam(false, "entropy", "Store the entropy of the archive at each gen.", '\0', "Output").value();
|
||||
if (ent)
|
||||
{
|
||||
if (! dirOK )
|
||||
dirOK = testDirRes(dirName, eraseParam.value()); // TRUE
|
||||
#ifdef _MSVC
|
||||
std::string stmp = dirName + "\entropy";
|
||||
#else
|
||||
std::string stmp = dirName + "/entropy";
|
||||
#endif
|
||||
moeoEntropyMetric < ObjectiveVector > * entropy = new moeoEntropyMetric < ObjectiveVector >;
|
||||
moeoBinaryMetricSavingUpdater < MOEOT > * entropy_updater = new moeoBinaryMetricSavingUpdater < MOEOT > (*entropy, _archive, stmp);
|
||||
_state.storeFunctor(entropy_updater);
|
||||
checkpoint.add(*entropy_updater);
|
||||
}
|
||||
|
||||
// and that's it for the (control and) output
|
||||
return checkpoint;
|
||||
}
|
||||
|
||||
#endif /*MAKE_CHECKPOINT_MOEO_H_*/
|
||||
106
tags/paradiseo-moeo-0.3/src/do/make_continue_moeo.h
Executable file
106
tags/paradiseo-moeo-0.3/src/do/make_continue_moeo.h
Executable file
|
|
@ -0,0 +1,106 @@
|
|||
// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
// make_continue_moeo.h
|
||||
// (c) OPAC Team (LIFL), Dolphin Project (INRIA), 2007
|
||||
/*
|
||||
This library...
|
||||
|
||||
Contact: paradiseo-help@lists.gforge.inria.fr, http://paradiseo.gforge.inria.fr
|
||||
*/
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
#ifndef MAKE_CONTINUE_MOEO_H_
|
||||
#define MAKE_CONTINUE_MOEO_H_
|
||||
|
||||
#include <eoCombinedContinue.h>
|
||||
#include <eoGenContinue.h>
|
||||
#include <eoEvalContinue.h>
|
||||
#include <eoFitContinue.h>
|
||||
#include <eoTimeContinue.h>
|
||||
#ifndef _MSC_VER
|
||||
#include <eoCtrlCContinue.h>
|
||||
#endif
|
||||
#include <utils/eoParser.h>
|
||||
#include <utils/eoState.h>
|
||||
|
||||
|
||||
/**
|
||||
* Helper function
|
||||
* @param _combined the eoCombinedContinue object
|
||||
* @param _cont the eoContinue to add
|
||||
*/
|
||||
template <class MOEOT>
|
||||
eoCombinedContinue<MOEOT> * make_combinedContinue(eoCombinedContinue<MOEOT> *_combined, eoContinue<MOEOT> *_cont)
|
||||
{
|
||||
if (_combined) // already exists
|
||||
_combined->add(*_cont);
|
||||
else
|
||||
_combined = new eoCombinedContinue<MOEOT>(*_cont);
|
||||
return _combined;
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* This functions allows to build a eoContinue for multi-objective optimization from the parser (partly taken from make_continue_pareto.h)
|
||||
* @param _parser the parser
|
||||
* @param _state to store allocated objects
|
||||
* @param _eval the funtions evaluator
|
||||
*/
|
||||
template <class MOEOT>
|
||||
eoContinue<MOEOT> & do_make_continue_moeo(eoParser& _parser, eoState& _state, eoEvalFuncCounter<MOEOT> & _eval)
|
||||
{
|
||||
// the combined continue - to be filled
|
||||
eoCombinedContinue<MOEOT> *continuator = NULL;
|
||||
// First the eoGenContinue - need a default value so you can run blind
|
||||
// but we also need to be able to avoid it <--> 0
|
||||
eoValueParam<unsigned>& maxGenParam = _parser.createParam(unsigned(100), "maxGen", "Maximum number of generations (0 = none)",'G',"Stopping criterion");
|
||||
if (maxGenParam.value()) // positive: -> define and store
|
||||
{
|
||||
eoGenContinue<MOEOT> *genCont = new eoGenContinue<MOEOT>(maxGenParam.value());
|
||||
_state.storeFunctor(genCont);
|
||||
// and "add" to combined
|
||||
continuator = make_combinedContinue<MOEOT>(continuator, genCont);
|
||||
}
|
||||
// maxEval
|
||||
eoValueParam<unsigned long>& maxEvalParam = _parser.getORcreateParam((unsigned long)0, "maxEval", "Maximum number of evaluations (0 = none)", 'E', "Stopping criterion");
|
||||
if (maxEvalParam.value())
|
||||
{
|
||||
eoEvalContinue<MOEOT> *evalCont = new eoEvalContinue<MOEOT>(_eval, maxEvalParam.value());
|
||||
_state.storeFunctor(evalCont);
|
||||
// and "add" to combined
|
||||
continuator = make_combinedContinue<MOEOT>(continuator, evalCont);
|
||||
}
|
||||
// maxTime
|
||||
eoValueParam<unsigned long>& maxTimeParam = _parser.getORcreateParam((unsigned long)0, "maxTime", "Maximum running time in seconds (0 = none)", 'T', "Stopping criterion");
|
||||
if (maxTimeParam.value()) // positive: -> define and store
|
||||
{
|
||||
eoTimeContinue<MOEOT> *timeCont = new eoTimeContinue<MOEOT>(maxTimeParam.value());
|
||||
_state.storeFunctor(timeCont);
|
||||
// and "add" to combined
|
||||
continuator = make_combinedContinue<MOEOT>(continuator, timeCont);
|
||||
}
|
||||
// CtrlC
|
||||
#ifndef _MSC_VER
|
||||
// the CtrlC interception (Linux only I'm afraid)
|
||||
eoCtrlCContinue<MOEOT> *ctrlCCont;
|
||||
eoValueParam<bool>& ctrlCParam = _parser.createParam(true, "CtrlC", "Terminate current generation upon Ctrl C",'C', "Stopping criterion");
|
||||
if (_parser.isItThere(ctrlCParam))
|
||||
{
|
||||
ctrlCCont = new eoCtrlCContinue<MOEOT>;
|
||||
// store
|
||||
_state.storeFunctor(ctrlCCont);
|
||||
// add to combinedContinue
|
||||
continuator = make_combinedContinue<MOEOT>(continuator, ctrlCCont);
|
||||
}
|
||||
#endif
|
||||
// now check that there is at least one!
|
||||
if (!continuator)
|
||||
throw std::runtime_error("You MUST provide a stopping criterion");
|
||||
// OK, it's there: store in the eoState
|
||||
_state.storeFunctor(continuator);
|
||||
// and return
|
||||
return *continuator;
|
||||
}
|
||||
|
||||
#endif /*MAKE_CONTINUE_MOEO_H_*/
|
||||
263
tags/paradiseo-moeo-0.3/src/do/make_ea_moeo.h
Executable file
263
tags/paradiseo-moeo-0.3/src/do/make_ea_moeo.h
Executable file
|
|
@ -0,0 +1,263 @@
|
|||
// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
// make_ea_moeo.h
|
||||
// (c) OPAC Team (LIFL), Dolphin Project (INRIA), 2007
|
||||
/*
|
||||
This library...
|
||||
|
||||
Contact: paradiseo-help@lists.gforge.inria.fr, http://paradiseo.gforge.inria.fr
|
||||
*/
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
#ifndef MAKE_EA_MOEO_H_
|
||||
#define MAKE_EA_MOEO_H_
|
||||
|
||||
#include <stdlib.h>
|
||||
#include <eoContinue.h>
|
||||
#include <eoEvalFunc.h>
|
||||
#include <eoGeneralBreeder.h>
|
||||
#include <eoGenOp.h>
|
||||
#include <utils/eoParser.h>
|
||||
#include <utils/eoState.h>
|
||||
#include <moeoArchive.h>
|
||||
#include <moeoComparator.h>
|
||||
#include <moeoCrowdingDistanceDiversityAssignment.h>
|
||||
#include <moeoDetTournamentSelect.h>
|
||||
#include <moeoDiversityAssignment.h>
|
||||
#include <moeoEA.h>
|
||||
#include <moeoEasyEA.h>
|
||||
#include <moeoElitistReplacement.h>
|
||||
#include <moeoEnvironmentalReplacement.h>
|
||||
#include <moeoFastNonDominatedSortingFitnessAssignment.h>
|
||||
#include <moeoFitnessAssignment.h>
|
||||
#include <moeoGenerationalReplacement.h>
|
||||
#include <moeoIndicatorBasedFitnessAssignment.h>
|
||||
#include <moeoRandomSelect.h>
|
||||
#include <moeoReplacement.h>
|
||||
#include <moeoRouletteSelect.h>
|
||||
#include <moeoSelectOne.h>
|
||||
#include <moeoSharingDiversityAssignment.h>
|
||||
#include <moeoStochTournamentSelect.h>
|
||||
#include <metric/moeoNormalizedSolutionVsSolutionBinaryMetric.h>
|
||||
|
||||
/**
|
||||
* This functions allows to build a moeoEA from the parser
|
||||
* @param _parser the parser
|
||||
* @param _state to store allocated objects
|
||||
* @param _eval the funtions evaluator
|
||||
* @param _continue the stopping crietria
|
||||
* @param _op the variation operators
|
||||
* @param _archive the archive of non-dominated solutions
|
||||
*/
|
||||
template < class MOEOT >
|
||||
moeoEA < MOEOT > & do_make_ea_moeo(eoParser & _parser, eoState & _state, eoEvalFunc < MOEOT > & _eval, eoContinue < MOEOT > & _continue, eoGenOp < MOEOT > & _op, moeoArchive < MOEOT > & _archive)
|
||||
{
|
||||
|
||||
/* the objective vector type */
|
||||
typedef typename MOEOT::ObjectiveVector ObjectiveVector;
|
||||
|
||||
|
||||
/* the fitness assignment strategy */
|
||||
string & fitnessParam = _parser.createParam(string("FastNonDominatedSorting"), "fitness",
|
||||
"Fitness assignment scheme: Dummy, FastNonDominatedSorting or IndicatorBased", 'F',
|
||||
"Evolution Engine").value();
|
||||
string & indicatorParam = _parser.createParam(string("Epsilon"), "indicator",
|
||||
"Binary indicator for IndicatorBased: Epsilon, Hypervolume", 'i',
|
||||
"Evolution Engine").value();
|
||||
double rho = _parser.createParam(1.1, "rho", "reference point for the hypervolume indicator", 'r',
|
||||
"Evolution Engine").value();
|
||||
double kappa = _parser.createParam(0.05, "kappa", "Scaling factor kappa for IndicatorBased", 'k',
|
||||
"Evolution Engine").value();
|
||||
moeoFitnessAssignment < MOEOT > * fitnessAssignment;
|
||||
if (fitnessParam == string("Dummy"))
|
||||
{
|
||||
fitnessAssignment = new moeoDummyFitnessAssignment < MOEOT> ();
|
||||
}
|
||||
else if (fitnessParam == string("FastNonDominatedSorting"))
|
||||
{
|
||||
fitnessAssignment = new moeoFastNonDominatedSortingFitnessAssignment < MOEOT> ();
|
||||
}
|
||||
else if (fitnessParam == string("IndicatorBased"))
|
||||
{
|
||||
// metric
|
||||
moeoNormalizedSolutionVsSolutionBinaryMetric < ObjectiveVector, double > *metric;
|
||||
if (indicatorParam == string("Epsilon"))
|
||||
{
|
||||
metric = new moeoAdditiveEpsilonBinaryMetric < ObjectiveVector >;
|
||||
}
|
||||
else if (indicatorParam == string("Hypervolume"))
|
||||
{
|
||||
metric = new moeoHypervolumeBinaryMetric < ObjectiveVector > (rho);
|
||||
}
|
||||
else
|
||||
{
|
||||
string stmp = string("Invalid binary quality indicator: ") + indicatorParam;
|
||||
throw std::runtime_error(stmp.c_str());
|
||||
}
|
||||
fitnessAssignment = new moeoIndicatorBasedFitnessAssignment < MOEOT > (*metric, kappa);
|
||||
}
|
||||
else
|
||||
{
|
||||
string stmp = string("Invalid fitness assignment strategy: ") + fitnessParam;
|
||||
throw std::runtime_error(stmp.c_str());
|
||||
}
|
||||
_state.storeFunctor(fitnessAssignment);
|
||||
|
||||
|
||||
/* the diversity assignment strategy */
|
||||
eoValueParam<eoParamParamType> & diversityParam = _parser.createParam(eoParamParamType("Dummy"), "diversity",
|
||||
"Diversity assignment scheme: Dummy, Sharing(nicheSize) or Crowding", 'D', "Evolution Engine");
|
||||
eoParamParamType & diversityParamValue = diversityParam.value();
|
||||
moeoDiversityAssignment < MOEOT > * diversityAssignment;
|
||||
if (diversityParamValue.first == string("Dummy"))
|
||||
{
|
||||
diversityAssignment = new moeoDummyDiversityAssignment < MOEOT> ();
|
||||
}
|
||||
else if (diversityParamValue.first == string("Sharing"))
|
||||
{
|
||||
double nicheSize;
|
||||
if (!diversityParamValue.second.size()) // no parameter added
|
||||
{
|
||||
cerr << "WARNING, no niche size given for Sharing, using 0.5" << std::endl;
|
||||
nicheSize = 0.5;
|
||||
diversityParamValue.second.push_back(std::string("0.5"));
|
||||
}
|
||||
else
|
||||
{
|
||||
nicheSize = atoi(diversityParamValue.second[0].c_str());
|
||||
}
|
||||
diversityAssignment = new moeoFrontByFrontSharingDiversityAssignment < MOEOT> (nicheSize);
|
||||
}
|
||||
else if (diversityParamValue.first == string("Crowding"))
|
||||
{
|
||||
diversityAssignment = new moeoFrontByFrontCrowdingDistanceDiversityAssignment < MOEOT> ();
|
||||
}
|
||||
else
|
||||
{
|
||||
string stmp = string("Invalid diversity assignment strategy: ") + diversityParamValue.first;
|
||||
throw std::runtime_error(stmp.c_str());
|
||||
}
|
||||
_state.storeFunctor(diversityAssignment);
|
||||
|
||||
|
||||
/* the comparator strategy */
|
||||
string & comparatorParam = _parser.createParam(string("FitnessThenDiversity"), "comparator",
|
||||
"Comparator scheme: FitnessThenDiversity, DiversityThenFitness or Aggregative", 'C', "Evolution Engine").value();
|
||||
moeoComparator < MOEOT > * comparator;
|
||||
if (comparatorParam == string("FitnessThenDiversity"))
|
||||
{
|
||||
comparator = new moeoFitnessThenDiversityComparator < MOEOT> ();
|
||||
}
|
||||
else if (comparatorParam == string("DiversityThenFitness"))
|
||||
{
|
||||
comparator = new moeoDiversityThenFitnessComparator < MOEOT> ();
|
||||
}
|
||||
else if (comparatorParam == string("Aggregative"))
|
||||
{
|
||||
comparator = new moeoAggregativeComparator < MOEOT> ();
|
||||
}
|
||||
else
|
||||
{
|
||||
string stmp = string("Invalid comparator strategy: ") + comparatorParam;
|
||||
throw std::runtime_error(stmp.c_str());
|
||||
}
|
||||
_state.storeFunctor(comparator);
|
||||
|
||||
|
||||
/* the selection strategy */
|
||||
eoValueParam < eoParamParamType > & selectionParam = _parser.createParam(eoParamParamType("DetTour(2)"), "selection",
|
||||
"Selection scheme: DetTour(T), StochTour(t) or Random", 'S', "Evolution Engine");
|
||||
eoParamParamType & ppSelect = selectionParam.value();
|
||||
moeoSelectOne < MOEOT > * select;
|
||||
if (ppSelect.first == string("DetTour"))
|
||||
{
|
||||
unsigned tSize;
|
||||
if (!ppSelect.second.size()) // no parameter added
|
||||
{
|
||||
cerr << "WARNING, no parameter passed to DetTour, using 2" << endl;
|
||||
tSize = 2;
|
||||
// put back 2 in parameter for consistency (and status file)
|
||||
ppSelect.second.push_back(string("2"));
|
||||
}
|
||||
else // parameter passed by user as DetTour(T)
|
||||
{
|
||||
tSize = atoi(ppSelect.second[0].c_str());
|
||||
}
|
||||
select = new moeoDetTournamentSelect < MOEOT > (*comparator, tSize);
|
||||
}
|
||||
else if (ppSelect.first == string("StochTour"))
|
||||
{
|
||||
double tRate;
|
||||
if (!ppSelect.second.size()) // no parameter added
|
||||
{
|
||||
cerr << "WARNING, no parameter passed to StochTour, using 1" << endl;
|
||||
tRate = 1;
|
||||
// put back 1 in parameter for consistency (and status file)
|
||||
ppSelect.second.push_back(string("1"));
|
||||
}
|
||||
else // parameter passed by user as StochTour(T)
|
||||
{
|
||||
tRate = atof(ppSelect.second[0].c_str());
|
||||
}
|
||||
select = new moeoStochTournamentSelect < MOEOT > (*comparator, tRate);
|
||||
}
|
||||
/*
|
||||
else if (ppSelect.first == string("Roulette"))
|
||||
{
|
||||
// TO DO !
|
||||
// ...
|
||||
}
|
||||
*/
|
||||
else if (ppSelect.first == string("Random"))
|
||||
{
|
||||
select = new moeoRandomSelect <MOEOT > ();
|
||||
}
|
||||
else
|
||||
{
|
||||
string stmp = string("Invalid selection strategy: ") + ppSelect.first;
|
||||
throw std::runtime_error(stmp.c_str());
|
||||
}
|
||||
_state.storeFunctor(select);
|
||||
|
||||
|
||||
/* the replacement strategy */
|
||||
string & replacementParam = _parser.createParam(string("Elitist"), "replacement",
|
||||
"Replacement scheme: Elitist, Environmental or Generational", 'R', "Evolution Engine").value();
|
||||
moeoReplacement < MOEOT > * replace;
|
||||
if (replacementParam == string("Elitist"))
|
||||
{
|
||||
replace = new moeoElitistReplacement < MOEOT> (*fitnessAssignment, *diversityAssignment, *comparator);
|
||||
}
|
||||
else if (replacementParam == string("Environmental"))
|
||||
{
|
||||
replace = new moeoEnvironmentalReplacement < MOEOT> (*fitnessAssignment, *diversityAssignment, *comparator);
|
||||
}
|
||||
else if (replacementParam == string("Generational"))
|
||||
{
|
||||
replace = new moeoGenerationalReplacement < MOEOT> ();
|
||||
}
|
||||
else
|
||||
{
|
||||
string stmp = string("Invalid replacement strategy: ") + replacementParam;
|
||||
throw std::runtime_error(stmp.c_str());
|
||||
}
|
||||
_state.storeFunctor(replace);
|
||||
|
||||
|
||||
/* the number of offspring */
|
||||
eoValueParam < eoHowMany > & offspringRateParam = _parser.createParam(eoHowMany(1.0), "nbOffspring",
|
||||
"Number of offspring (percentage or absolute)", 'O', "Evolution Engine");
|
||||
|
||||
|
||||
// the general breeder
|
||||
eoGeneralBreeder < MOEOT > * breed = new eoGeneralBreeder < MOEOT > (*select, _op, offspringRateParam.value());
|
||||
_state.storeFunctor(breed);
|
||||
// the eoEasyEA
|
||||
moeoEA < MOEOT > * algo = new moeoEasyEA < MOEOT > (_continue, _eval, *breed, *replace, *fitnessAssignment, *diversityAssignment);
|
||||
_state.storeFunctor(algo);
|
||||
return *algo;
|
||||
|
||||
}
|
||||
|
||||
#endif /*MAKE_EA_MOEO_H_*/
|
||||
120
tags/paradiseo-moeo-0.3/src/do/make_ls_moeo.h
Executable file
120
tags/paradiseo-moeo-0.3/src/do/make_ls_moeo.h
Executable file
|
|
@ -0,0 +1,120 @@
|
|||
// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
// make_ls_moeo.h
|
||||
// (c) OPAC Team (LIFL), Dolphin Project (INRIA), 2007
|
||||
/*
|
||||
This library...
|
||||
|
||||
Contact: paradiseo-help@lists.gforge.inria.fr, http://paradiseo.gforge.inria.fr
|
||||
*/
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
#ifndef MAKE_LS_MOEO_H_
|
||||
#define MAKE_LS_MOEO_H_
|
||||
|
||||
#include <eoContinue.h>
|
||||
#include <eoEvalFunc.h>
|
||||
#include <eoGenOp.h>
|
||||
#include <utils/eoParser.h>
|
||||
#include <utils/eoState.h>
|
||||
#include <moeoArchive.h>
|
||||
#include <moeoIndicatorBasedFitnessAssignment.h>
|
||||
#include <moeoLS.h>
|
||||
#include <moeoIndicatorBasedLS.h>
|
||||
#include <moeoIteratedIBMOLS.h>
|
||||
#include <metric/moeoNormalizedSolutionVsSolutionBinaryMetric.h>
|
||||
#include <moeoMoveIncrEval.h>
|
||||
|
||||
/**
|
||||
* This functions allows to build a moeoLS from the parser
|
||||
* @param _parser the parser
|
||||
* @param _state to store allocated objects
|
||||
* @param _eval the funtions evaluator
|
||||
* @param _moveIncrEval the incremental evaluation
|
||||
* @param _continue the stopping crietria
|
||||
* @param _op the variation operators
|
||||
* @param _opInit the initilization operator
|
||||
* @param _moveInit the move initializer
|
||||
* @param _nextMove the move incrementor
|
||||
* @param _archive the archive of non-dominated solutions
|
||||
*/
|
||||
template < class MOEOT, class Move >
|
||||
moeoLS < MOEOT, eoPop<MOEOT> & > & do_make_ls_moeo (
|
||||
eoParser & _parser,
|
||||
eoState & _state,
|
||||
eoEvalFunc < MOEOT > & _eval,
|
||||
moeoMoveIncrEval < Move > & _moveIncrEval,
|
||||
eoContinue < MOEOT > & _continue,
|
||||
eoMonOp < MOEOT > & _op,
|
||||
eoMonOp < MOEOT > & _opInit,
|
||||
moMoveInit < Move > & _moveInit,
|
||||
moNextMove < Move > & _nextMove,
|
||||
moeoArchive < MOEOT > & _archive
|
||||
)
|
||||
{
|
||||
/* the objective vector type */
|
||||
typedef typename MOEOT::ObjectiveVector ObjectiveVector;
|
||||
/* the fitness assignment strategy */
|
||||
string & fitnessParam = _parser.getORcreateParam(string("IndicatorBased"), "fitness",
|
||||
"Fitness assignment strategy parameter: IndicatorBased...", 'F',
|
||||
"Evolution Engine").value();
|
||||
string & indicatorParam = _parser.getORcreateParam(string("Epsilon"), "indicator",
|
||||
"Binary indicator to use with the IndicatorBased assignment: Epsilon, Hypervolume", 'i',
|
||||
"Evolution Engine").value();
|
||||
double rho = _parser.getORcreateParam(1.1, "rho", "reference point for the hypervolume indicator",
|
||||
'r', "Evolution Engine").value();
|
||||
double kappa = _parser.getORcreateParam(0.05, "kappa", "Scaling factor kappa for IndicatorBased",
|
||||
'k', "Evolution Engine").value();
|
||||
moeoIndicatorBasedFitnessAssignment < MOEOT > * fitnessAssignment;
|
||||
if (fitnessParam == string("IndicatorBased"))
|
||||
{
|
||||
// metric
|
||||
moeoNormalizedSolutionVsSolutionBinaryMetric < ObjectiveVector, double > *metric;
|
||||
if (indicatorParam == string("Epsilon"))
|
||||
{
|
||||
metric = new moeoAdditiveEpsilonBinaryMetric < ObjectiveVector >;
|
||||
}
|
||||
else if (indicatorParam == string("Hypervolume"))
|
||||
{
|
||||
metric = new moeoHypervolumeBinaryMetric < ObjectiveVector > (rho);
|
||||
}
|
||||
else
|
||||
{
|
||||
string stmp = string("Invalid binary quality indicator: ") + indicatorParam;
|
||||
throw std::runtime_error(stmp.c_str());
|
||||
}
|
||||
fitnessAssignment = new moeoIndicatorBasedFitnessAssignment < MOEOT> (*metric, kappa);
|
||||
}
|
||||
else
|
||||
{
|
||||
string stmp = string("Invalid fitness assignment strategy: ") + fitnessParam;
|
||||
throw std::runtime_error(stmp.c_str());
|
||||
}
|
||||
_state.storeFunctor(fitnessAssignment);
|
||||
// number of iterations
|
||||
unsigned n = _parser.getORcreateParam(1, "n", "Number of iterations for population Initialization", 'n', "Evolution Engine").value();
|
||||
// LS
|
||||
string & lsParam = _parser.getORcreateParam(string("I-IBMOLS"), "ls",
|
||||
"Local Search: IBMOLS, I-IBMOLS (Iterated-IBMOLS)...", 'L',
|
||||
"Evolution Engine").value();
|
||||
moeoLS < MOEOT, eoPop<MOEOT> & > * ls;
|
||||
if (lsParam == string("IBMOLS"))
|
||||
{
|
||||
ls = new moeoIndicatorBasedLS < MOEOT, Move > (_moveInit, _nextMove, _eval, _moveIncrEval, *fitnessAssignment, _continue);;
|
||||
}
|
||||
else if (lsParam == string("I-IBMOLS"))
|
||||
{
|
||||
ls = new moeoIteratedIBMOLS < MOEOT, Move > (_moveInit, _nextMove, _eval, _moveIncrEval, *fitnessAssignment, _continue, _op, _opInit, n);
|
||||
}
|
||||
else
|
||||
{
|
||||
string stmp = string("Invalid fitness assignment strategy: ") + fitnessParam;
|
||||
throw std::runtime_error(stmp.c_str());
|
||||
}
|
||||
_state.storeFunctor(ls);
|
||||
// that's it !
|
||||
return *ls;
|
||||
}
|
||||
|
||||
#endif /*MAKE_LS_MOEO_H_*/
|
||||
|
|
@ -0,0 +1,88 @@
|
|||
// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
// moeoBinaryMetricSavingUpdater.h
|
||||
// (c) OPAC Team (LIFL), Dolphin Project (INRIA), 2007
|
||||
/*
|
||||
This library...
|
||||
|
||||
Contact: paradiseo-help@lists.gforge.inria.fr, http://paradiseo.gforge.inria.fr
|
||||
*/
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
#ifndef MOEOBINARYMETRICSAVINGUPDATER_H_
|
||||
#define MOEOBINARYMETRICSAVINGUPDATER_H_
|
||||
|
||||
#include <fstream>
|
||||
#include <string>
|
||||
#include <eoPop.h>
|
||||
#include <utils/eoUpdater.h>
|
||||
#include <metric/moeoMetric.h>
|
||||
|
||||
/**
|
||||
* This class allows to save the progression of a binary metric comparing the objective vectors of the current population (or archive)
|
||||
* with the objective vectors of the population (or archive) of the generation (n-1) into a file
|
||||
*/
|
||||
template < class MOEOT >
|
||||
class moeoBinaryMetricSavingUpdater : public eoUpdater
|
||||
{
|
||||
public:
|
||||
|
||||
/**
|
||||
* The objective vector type of a solution
|
||||
*/
|
||||
typedef typename MOEOT::ObjectiveVector ObjectiveVector;
|
||||
|
||||
/**
|
||||
* Ctor
|
||||
* @param _metric the binary metric comparing two Pareto sets
|
||||
* @param _pop the main population
|
||||
* @param _filename the target filename
|
||||
*/
|
||||
moeoBinaryMetricSavingUpdater (moeoVectorVsVectorBinaryMetric < ObjectiveVector, double > & _metric, const eoPop < MOEOT > & _pop, std::string _filename) :
|
||||
metric(_metric), pop(_pop), filename(_filename), counter(1)
|
||||
{}
|
||||
|
||||
/**
|
||||
* Saves the metric's value for the current generation
|
||||
*/
|
||||
void operator()() {
|
||||
if (pop.size()) {
|
||||
if (firstGen) {
|
||||
firstGen = false;
|
||||
}
|
||||
else {
|
||||
// creation of the two Pareto sets
|
||||
std::vector < ObjectiveVector > from;
|
||||
std::vector < ObjectiveVector > to;
|
||||
for (unsigned i=0; i<pop.size(); i++)
|
||||
from.push_back(pop[i].objectiveVector());
|
||||
for (unsigned i=0 ; i<oldPop.size(); i++)
|
||||
to.push_back(oldPop[i].objectiveVector());
|
||||
// writing the result into the file
|
||||
std::ofstream f (filename.c_str(), std::ios::app);
|
||||
f << counter++ << ' ' << metric(from,to) << std::endl;
|
||||
f.close();
|
||||
}
|
||||
oldPop = pop;
|
||||
}
|
||||
}
|
||||
|
||||
private:
|
||||
|
||||
/** binary metric comparing two Pareto sets */
|
||||
moeoVectorVsVectorBinaryMetric < ObjectiveVector, double > & metric;
|
||||
/** main population */
|
||||
const eoPop < MOEOT > & pop;
|
||||
/** (n-1) population */
|
||||
eoPop< MOEOT > oldPop;
|
||||
/** target filename */
|
||||
std::string filename;
|
||||
/** is it the first generation ? */
|
||||
bool firstGen;
|
||||
/** counter */
|
||||
unsigned counter;
|
||||
|
||||
};
|
||||
|
||||
#endif /*MOEOBINARYMETRICSAVINGUPDATER_H_*/
|
||||
105
tags/paradiseo-moeo-0.3/src/metric/moeoContributionMetric.h
Normal file
105
tags/paradiseo-moeo-0.3/src/metric/moeoContributionMetric.h
Normal file
|
|
@ -0,0 +1,105 @@
|
|||
// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
// moeoContributionMetric.h
|
||||
// (c) OPAC Team (LIFL), Dolphin Project (INRIA), 2007
|
||||
/*
|
||||
This library...
|
||||
|
||||
Contact: paradiseo-help@lists.gforge.inria.fr, http://paradiseo.gforge.inria.fr
|
||||
*/
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
#ifndef MOEOCONTRIBUTIONMETRIC_H_
|
||||
#define MOEOCONTRIBUTIONMETRIC_H_
|
||||
|
||||
#include <moeoObjectiveVectorComparator.h>
|
||||
#include <metric/moeoMetric.h>
|
||||
|
||||
/**
|
||||
* The contribution metric evaluates the proportion of non-dominated solutions given by a Pareto set relatively to another Pareto set
|
||||
* (Meunier, Talbi, Reininger: 'A multiobjective genetic algorithm for radio network optimization', in Proc. of the 2000 Congress on Evolutionary Computation, IEEE Press, pp. 317-324)
|
||||
*/
|
||||
template < class ObjectiveVector >
|
||||
class moeoContributionMetric : public moeoVectorVsVectorBinaryMetric < ObjectiveVector, double >
|
||||
{
|
||||
public:
|
||||
|
||||
/**
|
||||
* Returns the contribution of the Pareto set '_set1' relatively to the Pareto set '_set2'
|
||||
* @param _set1 the first Pareto set
|
||||
* @param _set2 the second Pareto set
|
||||
*/
|
||||
double operator()(const std::vector < ObjectiveVector > & _set1, const std::vector < ObjectiveVector > & _set2) {
|
||||
unsigned c = card_C(_set1, _set2);
|
||||
unsigned w1 = card_W(_set1, _set2);
|
||||
unsigned n1 = card_N(_set1, _set2);
|
||||
unsigned w2 = card_W(_set2, _set1);
|
||||
unsigned n2 = card_N(_set2, _set1);
|
||||
return (double) (c / 2.0 + w1 + n1) / (c + w1 + n1 + w2 + n2);
|
||||
}
|
||||
|
||||
|
||||
private:
|
||||
|
||||
/** Functor to compare two objective vectors according to Pareto dominance relation */
|
||||
moeoParetoObjectiveVectorComparator < ObjectiveVector > paretoComparator;
|
||||
|
||||
|
||||
/**
|
||||
* Returns the number of solutions both in '_set1' and '_set2'
|
||||
* @param _set1 the first Pareto set
|
||||
* @param _set2 the second Pareto set
|
||||
*/
|
||||
unsigned card_C (const std::vector < ObjectiveVector > & _set1, const std::vector < ObjectiveVector > & _set2) {
|
||||
unsigned c=0;
|
||||
for (unsigned i=0; i<_set1.size(); i++)
|
||||
for (unsigned j=0; j<_set2.size(); j++)
|
||||
if (_set1[i] == _set2[j]) {
|
||||
c++;
|
||||
break;
|
||||
}
|
||||
return c;
|
||||
}
|
||||
|
||||
/**
|
||||
* Returns the number of solutions in '_set1' dominating at least one solution of '_set2'
|
||||
* @param _set1 the first Pareto set
|
||||
* @param _set2 the second Pareto set
|
||||
*/
|
||||
unsigned card_W (const std::vector < ObjectiveVector > & _set1, const std::vector < ObjectiveVector > & _set2) {
|
||||
unsigned w=0;
|
||||
for (unsigned i=0; i<_set1.size(); i++)
|
||||
for (unsigned j=0; j<_set2.size(); j++)
|
||||
if (paretoComparator(_set2[j], _set1[i]))
|
||||
{
|
||||
w++;
|
||||
break;
|
||||
}
|
||||
return w;
|
||||
}
|
||||
|
||||
/**
|
||||
* Returns the number of solutions in '_set1' having no relation of dominance with those from '_set2'
|
||||
* @param _set1 the first Pareto set
|
||||
* @param _set2 the second Pareto set
|
||||
*/
|
||||
unsigned card_N (const std::vector < ObjectiveVector > & _set1, const std::vector < ObjectiveVector > & _set2) {
|
||||
unsigned n=0;
|
||||
for (unsigned i=0; i<_set1.size(); i++) {
|
||||
bool domin_rel = false;
|
||||
for (unsigned j=0; j<_set2.size(); j++)
|
||||
if ( (paretoComparator(_set2[j], _set1[i])) || (paretoComparator(_set1[i], _set2[j])) )
|
||||
{
|
||||
domin_rel = true;
|
||||
break;
|
||||
}
|
||||
if (! domin_rel)
|
||||
n++;
|
||||
}
|
||||
return n;
|
||||
}
|
||||
|
||||
};
|
||||
|
||||
#endif /*MOEOCONTRIBUTIONMETRIC_H_*/
|
||||
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