Paradiseo-eo sources added
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<title>EO: make_checkpoint_assembled.h Source File</title>
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<h1>make_checkpoint_assembled.h</h1><div class="fragment"><pre class="fragment">00001 <span class="comment">/* -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*- */</span>
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00002
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00003 <span class="comment">//-----------------------------------------------------------------------------</span>
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00004 <span class="comment">// make_checkpoint_assembled.h</span>
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00005 <span class="comment">// Marc Wintermantel & Oliver Koenig</span>
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00006 <span class="comment">// IMES-ST@ETHZ.CH</span>
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00007 <span class="comment">// March 2003</span>
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00008
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00009 <span class="comment">/*</span>
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00010 <span class="comment"> This library is free software; you can redistribute it and/or</span>
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00011 <span class="comment"> modify it under the terms of the GNU Lesser General Public</span>
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00012 <span class="comment"> License as published by the Free Software Foundation; either</span>
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00013 <span class="comment"> version 2 of the License, or (at your option) any later version.</span>
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00014 <span class="comment"></span>
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00015 <span class="comment"> This library is distributed in the hope that it will be useful,</span>
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00016 <span class="comment"> but WITHOUT ANY WARRANTY; without even the implied warranty of</span>
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00017 <span class="comment"> MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU</span>
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||||
00018 <span class="comment"> Lesser General Public License for more details.</span>
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00019 <span class="comment"></span>
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00020 <span class="comment"> You should have received a copy of the GNU Lesser General Public</span>
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00021 <span class="comment"> License along with this library; if not, write to the Free Software</span>
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00022 <span class="comment"> Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA</span>
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00023 <span class="comment"></span>
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00024 <span class="comment"> Contact: todos@geneura.ugr.es, http://geneura.ugr.es</span>
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00025 <span class="comment"> Marc.Schoenauer@inria.fr</span>
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00026 <span class="comment"> mak@dhi.dk</span>
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00027 <span class="comment">*/</span>
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00028 <span class="comment">//-----------------------------------------------------------------------------</span>
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00029
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00030 <span class="preprocessor">#ifndef _make_checkpoint_assembled_h</span>
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00031 <span class="preprocessor"></span><span class="preprocessor">#define _make_checkpoint_assembled_h</span>
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00032 <span class="preprocessor"></span>
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00033 <span class="preprocessor">#include <vector></span>
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00034 <span class="preprocessor">#include <string></span>
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00035
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00036 <span class="preprocessor">#include <eoScalarFitnessAssembled.h></span>
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00037 <span class="preprocessor">#include <utils/selectors.h></span>
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00038 <span class="preprocessor">#include <EO.h></span>
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00039 <span class="preprocessor">#include <eoEvalFuncCounter.h></span>
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00040 <span class="preprocessor">#include <utils/checkpointing></span>
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00041
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00042 <span class="comment">// at the moment, in utils/make_help.cpp</span>
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00043 <span class="comment">// this should become some eoUtils.cpp with corresponding eoUtils.h</span>
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00044 <span class="keywordtype">bool</span> testDirRes(std::string _dirName, <span class="keywordtype">bool</span> _erase);
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00046
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00048 <span class="keyword">template</span> <<span class="keyword">class</span> EOT>
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00049 <a class="code" href="classeo_check_point.html">eoCheckPoint<EOT></a>& do_make_checkpoint_assembled(<a class="code" href="classeo_parser.html">eoParser</a>& _parser, <a class="code" href="classeo_state.html">eoState</a>& _state, <a class="code" href="classeo_eval_func_counter.html">eoEvalFuncCounter<EOT></a>& _eval, <a class="code" href="classeo_continue.html">eoContinue<EOT></a>& _continue)
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00050 {
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00051
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00052 <span class="comment">// SOME PARSER PARAMETERS</span>
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00053 <span class="comment">// ----------------------</span>
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00054 std::string dirName = _parser.<a class="code" href="classeo_parser.html#a10">getORcreateParam</a>(std::string(<span class="stringliteral">"Res"</span>), <span class="stringliteral">"resDir"</span>,
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00055 <span class="stringliteral">"Directory to store DISK outputs"</span>,
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00056 <span class="charliteral">'\0'</span>, <span class="stringliteral">"Output"</span>).value();
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00057 <span class="keywordtype">bool</span> erase = _parser.<a class="code" href="classeo_parser.html#a10">getORcreateParam</a>(<span class="keyword">true</span>, <span class="stringliteral">"eraseDir"</span>,
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00058 <span class="stringliteral">"Erase files in dirName if any"</span>,
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00059 <span class="charliteral">'\0'</span>, <span class="stringliteral">"Output"</span>).value();
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00060 <span class="keywordtype">bool</span> gnuplots = _parser.<a class="code" href="classeo_parser.html#a10">getORcreateParam</a>(<span class="keyword">true</span>, <span class="stringliteral">"plots"</span>,
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00061 <span class="stringliteral">"Plot stuff using GnuPlot"</span>,
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00062 <span class="charliteral">'\0'</span>, <span class="stringliteral">"Output"</span>).value();
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00063 <span class="keywordtype">bool</span> printFile = _parser.<a class="code" href="classeo_parser.html#a10">getORcreateParam</a>(<span class="keyword">true</span>, <span class="stringliteral">"printFile"</span>,
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00064 <span class="stringliteral">"Print statistics file"</span>,
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00065 <span class="charliteral">'\0'</span>, <span class="stringliteral">"Output"</span>).value();
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00066
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00067 <a class="code" href="classeo_value_param.html">eoValueParam<unsigned></a>& saveFrequencyParam
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00068 = _parser.<a class="code" href="classeo_parser.html#a10">getORcreateParam</a>(<span class="keywordtype">unsigned</span>(0), <span class="stringliteral">"saveFrequency"</span>,
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00069 <span class="stringliteral">"Save every F generation (0 = only final state, absent = never)"</span>,
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00070 <span class="charliteral">'\0'</span>, <span class="stringliteral">"Persistence"</span> );
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00071
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00072 testDirRes(dirName, erase); <span class="comment">// TRUE</span>
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00073
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00074 <span class="comment">// CREATE CHECKPOINT FROM eoContinue</span>
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00075 <span class="comment">// ---------------------------------</span>
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00076 <a class="code" href="classeo_check_point.html">eoCheckPoint<EOT></a> *checkpoint = <span class="keyword">new</span> <a class="code" href="classeo_check_point.html">eoCheckPoint<EOT></a>(_continue);
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00077 _state.<a class="code" href="classeo_functor_store.html#a2">storeFunctor</a>(checkpoint);
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00078
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00079 <span class="comment">// GENERATIONS</span>
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00080 <span class="comment">// -----------</span>
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00081 <a class="code" href="classeo_incrementor_param.html">eoIncrementorParam<unsigned></a> *generationCounter = <span class="keyword">new</span> <a class="code" href="classeo_incrementor_param.html">eoIncrementorParam<unsigned></a>(<span class="stringliteral">"Gen."</span>);
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00082 _state.<a class="code" href="classeo_functor_store.html#a2">storeFunctor</a>(generationCounter);
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00083 checkpoint-><a class="code" href="classeo_check_point.html#a2">add</a>(*generationCounter);
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00084
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00085 <span class="comment">// TIME</span>
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00086 <span class="comment">// ----</span>
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00087 <a class="code" href="classeo_time_counter.html">eoTimeCounter</a> * tCounter = NULL;
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00088 tCounter = <span class="keyword">new</span> <a class="code" href="classeo_time_counter.html">eoTimeCounter</a>;
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00089 _state.<a class="code" href="classeo_functor_store.html#a2">storeFunctor</a>(tCounter);
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00090 checkpoint-><a class="code" href="classeo_check_point.html#a2">add</a>(*tCounter);
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00091
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00092 <span class="comment">// ACCESS DESCRIPTIONS OF TERMS OF FITNESS CLASS</span>
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00093 <span class="comment">// ---------------------------------------------</span>
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00094 <span class="comment">// define a temporary fitness instance</span>
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00095 <span class="keyword">typedef</span> <span class="keyword">typename</span> EOT::Fitness Fit;
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00096 Fit fit;
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00097 std::vector<std::string> fitness_descriptions = fit.getDescriptionVector();
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00098 <span class="keywordtype">unsigned</span> nTerms = fitness_descriptions.size();
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00099
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00100 <span class="comment">// STAT VALUES OF A POPULATION</span>
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00101 <span class="comment">// ---------------------------</span>
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00102
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00103 <span class="comment">// average vals</span>
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00104 std::vector<eoAssembledFitnessAverageStat<EOT>* > avgvals( nTerms );
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00105 <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> i=0; i < nTerms; ++i){
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00106 std::string descr = <span class="stringliteral">"Avg. of "</span> + fitness_descriptions[i];
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00107 avgvals[i] = <span class="keyword">new</span> <a class="code" href="classeo_assembled_fitness_average_stat.html">eoAssembledFitnessAverageStat<EOT></a>(i, descr);
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00108 _state.<a class="code" href="classeo_functor_store.html#a2">storeFunctor</a>( avgvals[i] );
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00109 checkpoint-><a class="code" href="classeo_check_point.html#a2">add</a>( *avgvals[i] );
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00110 }
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00111
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00112 <span class="comment">// best vals</span>
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00113 std::vector<eoAssembledFitnessBestStat<EOT>* > bestvals( nTerms );
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00114 <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> j=0; j < nTerms; ++j){
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00115 std::string descr = fitness_descriptions[j] + <span class="stringliteral">" of best ind."</span>;
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00116 bestvals[j] = <span class="keyword">new</span> <a class="code" href="classeo_assembled_fitness_best_stat.html">eoAssembledFitnessBestStat<EOT></a>(j, descr);
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00117 _state.<a class="code" href="classeo_functor_store.html#a2">storeFunctor</a>( bestvals[j] );
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00118 checkpoint-><a class="code" href="classeo_check_point.html#a2">add</a>( *bestvals[j] );
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00119 }
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00120
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00121 <span class="comment">// STDOUT</span>
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00122 <span class="comment">// ------</span>
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00123 <a class="code" href="classeo_stdout_monitor.html">eoStdoutMonitor</a> *monitor = <span class="keyword">new</span> <a class="code" href="classeo_stdout_monitor.html">eoStdoutMonitor</a>(<span class="keyword">false</span>);
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00124 _state.<a class="code" href="classeo_functor_store.html#a2">storeFunctor</a>(monitor);
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00125 checkpoint-><a class="code" href="classeo_check_point.html#a2">add</a>(*monitor);
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00126 monitor-><a class="code" href="classeo_monitor.html#a1">add</a>(*generationCounter);
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00127 monitor-><a class="code" href="classeo_monitor.html#a1">add</a>(_eval);
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00128 monitor-><a class="code" href="classeo_monitor.html#a1">add</a>(*tCounter);
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00129
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00130 <span class="comment">// Add best fitness</span>
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00131 monitor-><a class="code" href="classeo_monitor.html#a1">add</a>( *bestvals[0] );
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00132
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00133 <span class="comment">// Add all average vals</span>
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00134 <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> l=0; l < nTerms; ++l)
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00135 monitor-><a class="code" href="classeo_monitor.html#a1">add</a>( *avgvals[l] );
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00136
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00137 <span class="comment">// GNUPLOT</span>
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00138 <span class="comment">// -------</span>
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00139 <span class="keywordflow">if</span> (gnuplots ){
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00140 std::string stmp;
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00141
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00142 <span class="comment">// Histogramm of the different fitness vals</span>
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00143 <a class="code" href="classeo_scalar_fitness_stat.html">eoScalarFitnessStat<EOT></a> *fitStat = <span class="keyword">new</span> <a class="code" href="classeo_scalar_fitness_stat.html">eoScalarFitnessStat<EOT></a>;
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00144 _state.<a class="code" href="classeo_functor_store.html#a2">storeFunctor</a>(fitStat);
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00145 checkpoint-><a class="code" href="classeo_check_point.html#a2">add</a>(*fitStat);
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00146 <span class="comment">// a gnuplot-based monitor for snapshots: needs a dir name</span>
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00147 <a class="code" href="classeo_gnuplot1_d_snapshot.html">eoGnuplot1DSnapshot</a> *fitSnapshot = <span class="keyword">new</span> <a class="code" href="classeo_gnuplot1_d_snapshot.html">eoGnuplot1DSnapshot</a>(dirName);
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00148 _state.<a class="code" href="classeo_functor_store.html#a2">storeFunctor</a>(fitSnapshot);
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00149 <span class="comment">// add any stat that is a vector<double> to it</span>
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00150 fitSnapshot-><a class="code" href="classeo_file_snapshot.html#a9">add</a>(*fitStat);
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00151 <span class="comment">// and of course add it to the checkpoint</span>
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00152 checkpoint-><a class="code" href="classeo_check_point.html#a2">add</a>(*fitSnapshot);
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00153
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00154 std::vector<eoGnuplot1DMonitor*> gnumonitors(nTerms, NULL );
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00155 <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> k=0; k < nTerms; ++k){
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00156 stmp = dirName + <span class="stringliteral">"/gnuplot_"</span> + fitness_descriptions[k] + <span class="stringliteral">".xg"</span>;
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00157 gnumonitors[k] = <span class="keyword">new</span> <a class="code" href="classeo_gnuplot1_d_monitor.html">eoGnuplot1DMonitor</a>(stmp,<span class="keyword">true</span>);
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00158 _state.<a class="code" href="classeo_functor_store.html#a2">storeFunctor</a>(gnumonitors[k]);
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00159 checkpoint-><a class="code" href="classeo_check_point.html#a2">add</a>(*gnumonitors[k]);
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00160 gnumonitors[k]-><a class="code" href="classeo_check_point.html#a2">add</a>(*generationCounter);
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00161 gnumonitors[k]-><a class="code" href="classeo_check_point.html#a2">add</a>(*bestvals[k]);
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00162 gnumonitors[k]-><a class="code" href="classeo_check_point.html#a2">add</a>(*avgvals[k]);
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00163 }
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00164
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00165 }
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00166
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00167 <span class="comment">// WRITE STUFF TO FILE</span>
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00168 <span class="comment">// -------------------</span>
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00169 <span class="keywordflow">if</span>( printFile ){
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00170 std::string stmp2 = dirName + <span class="stringliteral">"/eoStatistics.sav"</span>;
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00171 <a class="code" href="classeo_file_monitor.html">eoFileMonitor</a> *fileMonitor = <span class="keyword">new</span> <a class="code" href="classeo_file_monitor.html">eoFileMonitor</a>(stmp2);
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00172 _state.<a class="code" href="classeo_functor_store.html#a2">storeFunctor</a>(fileMonitor);
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00173 checkpoint-><a class="code" href="classeo_check_point.html#a2">add</a>(*fileMonitor);
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00174 fileMonitor-><a class="code" href="classeo_monitor.html#a1">add</a>(*generationCounter);
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00175 fileMonitor-><a class="code" href="classeo_monitor.html#a1">add</a>(_eval);
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00176 fileMonitor-><a class="code" href="classeo_monitor.html#a1">add</a>(*tCounter);
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00177
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00178 <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> i=0; i < nTerms; ++i){
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00179 fileMonitor-><a class="code" href="classeo_monitor.html#a1">add</a>(*bestvals[i]);
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00180 fileMonitor-><a class="code" href="classeo_monitor.html#a1">add</a>(*avgvals[i]);
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00181 }
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00182
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00183 }
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00184
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00185 <span class="comment">// STATE SAVER</span>
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00186 <span class="comment">// -----------</span>
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00187 <span class="comment">// feed the state to state savers</span>
|
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00188
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00189 <span class="keywordflow">if</span> (_parser.<a class="code" href="classeo_parser.html#a8">isItThere</a>(saveFrequencyParam)) {
|
||||
00190
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||||
00191 <span class="keywordtype">unsigned</span> freq = (saveFrequencyParam.<a class="code" href="classeo_value_param.html#a2">value</a>() > 0 ? saveFrequencyParam.<a class="code" href="classeo_value_param.html#a2">value</a>() : UINT_MAX );
|
||||
00192 std::string stmp = dirName + <span class="stringliteral">"/generations"</span>;
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||||
00193 <a class="code" href="classeo_counted_state_saver.html">eoCountedStateSaver</a> *stateSaver1 = <span class="keyword">new</span> <a class="code" href="classeo_counted_state_saver.html">eoCountedStateSaver</a>(freq, _state, stmp);
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||||
00194 _state.<a class="code" href="classeo_functor_store.html#a2">storeFunctor</a>(stateSaver1);
|
||||
00195 checkpoint-><a class="code" href="classeo_check_point.html#a2">add</a>(*stateSaver1);
|
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00196 }
|
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00197
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||||
00198 <span class="comment">// and that's it for the (control and) output</span>
|
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00199 <span class="keywordflow">return</span> *checkpoint;
|
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00200 }
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00201
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00202 <span class="preprocessor">#endif</span>
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</pre></div><hr size="1"><address style="align: right;"><small>Generated on Thu Oct 19 05:06:40 2006 for EO by
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<img src="doxygen.png" alt="doxygen" align="middle" border="0"></a> 1.3.9.1 </small></address>
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