Paradiseo-eo sources added
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trunk/paradiseo-eo/doc/html/ga_2make__op_8h-source.html
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<h1>ga/make_op.h</h1><div class="fragment"><pre class="fragment">00001 <span class="comment">// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-</span>
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00002
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00003 <span class="comment">//-----------------------------------------------------------------------------</span>
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00004 <span class="comment">// make_op.h</span>
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00005 <span class="comment">// (c) Maarten Keijzer, Marc Schoenauer and GeNeura Team, 2001</span>
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00006 <span class="comment">/* </span>
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00007 <span class="comment"> This library is free software; you can redistribute it and/or</span>
|
||||
00008 <span class="comment"> modify it under the terms of the GNU Lesser General Public</span>
|
||||
00009 <span class="comment"> License as published by the Free Software Foundation; either</span>
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||||
00010 <span class="comment"> version 2 of the License, or (at your option) any later version.</span>
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||||
00011 <span class="comment"></span>
|
||||
00012 <span class="comment"> This library is distributed in the hope that it will be useful,</span>
|
||||
00013 <span class="comment"> but WITHOUT ANY WARRANTY; without even the implied warranty of</span>
|
||||
00014 <span class="comment"> MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU</span>
|
||||
00015 <span class="comment"> Lesser General Public License for more details.</span>
|
||||
00016 <span class="comment"></span>
|
||||
00017 <span class="comment"> You should have received a copy of the GNU Lesser General Public</span>
|
||||
00018 <span class="comment"> License along with this library; if not, write to the Free Software</span>
|
||||
00019 <span class="comment"> Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA</span>
|
||||
00020 <span class="comment"></span>
|
||||
00021 <span class="comment"> Contact: todos@geneura.ugr.es, http://geneura.ugr.es</span>
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00022 <span class="comment"> Marc.Schoenauer@polytechnique.fr</span>
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00023 <span class="comment"> mkeijzer@dhi.dk</span>
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00024 <span class="comment"> */</span>
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00025 <span class="comment">//-----------------------------------------------------------------------------</span>
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00026
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00027 <span class="preprocessor">#ifndef _make_op_h</span>
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00028 <span class="preprocessor"></span><span class="preprocessor">#define _make_op_h</span>
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00029 <span class="preprocessor"></span>
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00030 <span class="comment">// the operators</span>
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00031 <span class="preprocessor">#include <eoOp.h></span>
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00032 <span class="preprocessor">#include <eoGenOp.h></span>
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00033 <span class="preprocessor">#include <eoCloneOps.h></span>
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00034 <span class="preprocessor">#include <eoOpContainer.h></span>
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00035 <span class="comment">// combinations of simple eoOps (eoMonOp and eoQuadOp)</span>
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00036 <span class="preprocessor">#include <eoProportionalCombinedOp.h></span>
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00037
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00038 <span class="comment">// the specialized GA stuff</span>
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00039 <span class="preprocessor">#include <ga/eoBit.h></span>
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00040 <span class="preprocessor">#include <ga/eoBitOp.h></span>
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00041 <span class="comment">// also need the parser and param includes</span>
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00042 <span class="preprocessor">#include <utils/eoParser.h></span>
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00043 <span class="preprocessor">#include <utils/eoState.h></span>
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00044
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00045
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00047 <span class="comment">// canonical (crossover + mutation) only at the moment //</span>
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00048
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00049 <span class="comment">/*</span>
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00050 <span class="comment"> * This function builds the operators that will be applied to the bitstrings</span>
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00051 <span class="comment"> *</span>
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00052 <span class="comment"> * It uses a parser (to get user parameters) and a state (to store the memory)</span>
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00053 <span class="comment"> * the last argument is an individual, needed for 2 reasons</span>
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00054 <span class="comment"> * it disambiguates the call after instanciations</span>
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00055 <span class="comment"> * some operator might need some private information about the indis</span>
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00056 <span class="comment"> *</span>
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00057 <span class="comment"> * This is why the template is the complete EOT even though only the fitness</span>
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00058 <span class="comment"> * is actually templatized here: the following only applies to bitstrings</span>
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00059 <span class="comment"> *</span>
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00060 <span class="comment"> * Note : the last parameter is an eoInit: if some operator needs some info </span>
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00061 <span class="comment"> * about the gneotypes, the init has it all (e.g. bounds, ...)</span>
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00062 <span class="comment"> * Simply do </span>
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00063 <span class="comment"> * EOT myEO;</span>
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00064 <span class="comment"> * _init(myEO);</span>
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00065 <span class="comment"> * and myEO is then an ACTUAL object</span>
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00066 <span class="comment">*/</span>
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00067
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00068 <span class="keyword">template</span> <<span class="keyword">class</span> EOT>
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00069 <a class="code" href="classeo_gen_op.html">eoGenOp<EOT></a> & do_make_op(<a class="code" href="classeo_parser.html">eoParser</a>& _parser, <a class="code" href="classeo_state.html">eoState</a>& _state, <a class="code" href="classeo_init.html">eoInit<EOT></a>& _init)
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00070 {
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00071 <span class="comment">// this is a temporary version, while Maarten codes the full tree-structured</span>
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00072 <span class="comment">// general operator input</span>
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00073 <span class="comment">// BTW we must leave that simple version available somehow, as it is the one</span>
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00074 <span class="comment">// that 90% people use!</span>
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00075 <a class="code" href="classeo_value_param.html">eoValueParam<std::string></a>& operatorParam = _parser.createParam(std::string(<span class="stringliteral">"SGA"</span>), <span class="stringliteral">"operator"</span>, <span class="stringliteral">"Description of the operator (SGA only now)"</span>, <span class="charliteral">'o'</span>, <span class="stringliteral">"Variation Operators"</span>);
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00076
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00077 <span class="keywordflow">if</span> (operatorParam.value() != std::string(<span class="stringliteral">"SGA"</span>))
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00078 <span class="keywordflow">throw</span> std::runtime_error(<span class="stringliteral">"Only SGA-like operator available right now\n"</span>);
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00079
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00080 <span class="comment">// now we read Pcross and Pmut, </span>
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00081 <span class="comment">// the relative weights for all crossovers -> proportional choice</span>
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00082 <span class="comment">// the relative weights for all mutations -> proportional choice</span>
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00083 <span class="comment">// and create the eoGenOp that is exactly </span>
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00084 <span class="comment">// crossover with pcross + mutation with pmut</span>
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00085
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00086 <a class="code" href="classeo_value_param.html">eoValueParam<double></a>& pCrossParam = _parser.<a class="code" href="classeo_parameter_loader.html#a3">createParam</a>(0.6, <span class="stringliteral">"pCross"</span>, <span class="stringliteral">"Probability of Crossover"</span>, <span class="charliteral">'C'</span>, <span class="stringliteral">"Variation Operators"</span> );
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00087 <span class="comment">// minimum check</span>
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00088 <span class="keywordflow">if</span> ( (pCrossParam.<a class="code" href="classeo_value_param.html#a2">value</a>() < 0) || (pCrossParam.<a class="code" href="classeo_value_param.html#a2">value</a>() > 1) )
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00089 <span class="keywordflow">throw</span> std::runtime_error(<span class="stringliteral">"Invalid pCross"</span>);
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00090
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00091 <a class="code" href="classeo_value_param.html">eoValueParam<double></a>& pMutParam = _parser.<a class="code" href="classeo_parameter_loader.html#a3">createParam</a>(0.1, <span class="stringliteral">"pMut"</span>, <span class="stringliteral">"Probability of Mutation"</span>, <span class="charliteral">'M'</span>, <span class="stringliteral">"Variation Operators"</span> );
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||||
00092 <span class="comment">// minimum check</span>
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||||
00093 <span class="keywordflow">if</span> ( (pMutParam.<a class="code" href="classeo_value_param.html#a2">value</a>() < 0) || (pMutParam.<a class="code" href="classeo_value_param.html#a2">value</a>() > 1) )
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00094 <span class="keywordflow">throw</span> std::runtime_error(<span class="stringliteral">"Invalid pMut"</span>);
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00095
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00096 <span class="comment">// the crossovers</span>
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00098 <span class="comment"></span> <span class="comment">// the parameters</span>
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00099 <a class="code" href="classeo_value_param.html">eoValueParam<double></a>& onePointRateParam = _parser.<a class="code" href="classeo_parameter_loader.html#a3">createParam</a>(<span class="keywordtype">double</span>(1.0), <span class="stringliteral">"onePointRate"</span>, <span class="stringliteral">"Relative rate for one point crossover"</span>, <span class="charliteral">'1'</span>, <span class="stringliteral">"Variation Operators"</span> );
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00100 <span class="comment">// minimum check</span>
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||||
00101 <span class="keywordflow">if</span> ( (onePointRateParam.<a class="code" href="classeo_value_param.html#a2">value</a>() < 0) )
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00102 <span class="keywordflow">throw</span> std::runtime_error(<span class="stringliteral">"Invalid onePointRate"</span>);
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00103
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00104 <a class="code" href="classeo_value_param.html">eoValueParam<double></a>& twoPointsRateParam = _parser.<a class="code" href="classeo_parameter_loader.html#a3">createParam</a>(<span class="keywordtype">double</span>(1.0), <span class="stringliteral">"twoPointRate"</span>, <span class="stringliteral">"Relative rate for two point crossover"</span>, <span class="charliteral">'2'</span>, <span class="stringliteral">"Variation Operators"</span> );
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||||
00105 <span class="comment">// minimum check</span>
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||||
00106 <span class="keywordflow">if</span> ( (twoPointsRateParam.<a class="code" href="classeo_value_param.html#a2">value</a>() < 0) )
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00107 <span class="keywordflow">throw</span> std::runtime_error(<span class="stringliteral">"Invalid twoPointsRate"</span>);
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||||
00108
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00109 <a class="code" href="classeo_value_param.html">eoValueParam<double></a>& uRateParam = _parser.<a class="code" href="classeo_parameter_loader.html#a3">createParam</a>(<span class="keywordtype">double</span>(2.0), <span class="stringliteral">"uRate"</span>, <span class="stringliteral">"Relative rate for uniform crossover"</span>, <span class="charliteral">'U'</span>, <span class="stringliteral">"Variation Operators"</span> );
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||||
00110 <span class="comment">// minimum check</span>
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||||
00111 <span class="keywordflow">if</span> ( (uRateParam.<a class="code" href="classeo_value_param.html#a2">value</a>() < 0) )
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00112 <span class="keywordflow">throw</span> std::runtime_error(<span class="stringliteral">"Invalid uRate"</span>);
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00113
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00114 <span class="comment">// minimum check</span>
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||||
00115 <span class="keywordtype">bool</span> bCross = <span class="keyword">true</span>;
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00116 <span class="keywordflow">if</span> (onePointRateParam.<a class="code" href="classeo_value_param.html#a2">value</a>()+twoPointsRateParam.<a class="code" href="classeo_value_param.html#a2">value</a>()+uRateParam.<a class="code" href="classeo_value_param.html#a2">value</a>()==0)
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00117 {
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00118 std::cerr << <span class="stringliteral">"Warning: no crossover"</span> << std::endl;
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00119 bCross = <span class="keyword">false</span>;
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00120 }
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00121
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00122 <span class="comment">// Create the CombinedQuadOp</span>
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00123 <a class="code" href="classeo_prop_combined_quad_op.html">eoPropCombinedQuadOp<EOT></a> *ptCombinedQuadOp = NULL;
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00124 <a class="code" href="classeo_quad_op.html">eoQuadOp<EOT></a> *ptQuad = NULL;
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00125 <span class="comment">// 1-point crossover for bitstring</span>
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00126 ptQuad = <span class="keyword">new</span> eo1PtBitXover<EOT>;
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00127 _state.<a class="code" href="classeo_functor_store.html#a2">storeFunctor</a>(ptQuad);
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00128 ptCombinedQuadOp = <span class="keyword">new</span> <a class="code" href="classeo_prop_combined_quad_op.html">eoPropCombinedQuadOp<EOT></a>(*ptQuad, onePointRateParam.<a class="code" href="classeo_value_param.html#a2">value</a>());
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00129
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00130 <span class="comment">// uniform crossover for bitstring</span>
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00131 ptQuad = <span class="keyword">new</span> <a class="code" href="classeo_u_bit_xover.html">eoUBitXover<EOT></a>;
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00132 _state.<a class="code" href="classeo_functor_store.html#a2">storeFunctor</a>(ptQuad);
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00133 ptCombinedQuadOp-><a class="code" href="classeo_prop_combined_quad_op.html#a2">add</a>(*ptQuad, uRateParam.<a class="code" href="classeo_value_param.html#a2">value</a>());
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00134
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00135 <span class="comment">// 2-points xover</span>
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00136 ptQuad = <span class="keyword">new</span> <a class="code" href="classeo_n_pts_bit_xover.html">eoNPtsBitXover<EOT></a>;
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00137 _state.<a class="code" href="classeo_functor_store.html#a2">storeFunctor</a>(ptQuad);
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00138 ptCombinedQuadOp-><a class="code" href="classeo_prop_combined_quad_op.html#a2">add</a>(*ptQuad, twoPointsRateParam.<a class="code" href="classeo_value_param.html#a2">value</a>());
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00139
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00140 <span class="comment">// don't forget to store the CombinedQuadOp</span>
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||||
00141 _state.<a class="code" href="classeo_functor_store.html#a2">storeFunctor</a>(ptCombinedQuadOp);
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00142
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00143 <span class="comment">// the mutations</span>
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00145 <span class="comment"></span> <span class="comment">// the parameters</span>
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00146 <a class="code" href="classeo_value_param.html">eoValueParam<double></a> & pMutPerBitParam = _parser.<a class="code" href="classeo_parameter_loader.html#a3">createParam</a>(0.01, <span class="stringliteral">"pMutPerBit"</span>, <span class="stringliteral">"Probability of flipping 1 bit in bit-flip mutation"</span>, <span class="charliteral">'b'</span>, <span class="stringliteral">"Variation Operators"</span> );
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||||
00147 <span class="comment">// minimum check</span>
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||||
00148 <span class="keywordflow">if</span> ( (pMutPerBitParam.<a class="code" href="classeo_value_param.html#a2">value</a>() < 0) || (pMutPerBitParam.<a class="code" href="classeo_value_param.html#a2">value</a>() > 0.5) )
|
||||
00149 <span class="keywordflow">throw</span> std::runtime_error(<span class="stringliteral">"Invalid pMutPerBit"</span>);
|
||||
00150
|
||||
00151 <a class="code" href="classeo_value_param.html">eoValueParam<double></a> & bitFlipRateParam = _parser.<a class="code" href="classeo_parameter_loader.html#a3">createParam</a>(0.01, <span class="stringliteral">"bitFlipRate"</span>, <span class="stringliteral">"Relative rate for bit-flip mutation"</span>, <span class="charliteral">'s'</span>, <span class="stringliteral">"Variation Operators"</span> );
|
||||
00152 <span class="comment">// minimum check</span>
|
||||
00153 <span class="keywordflow">if</span> ( (bitFlipRateParam.<a class="code" href="classeo_value_param.html#a2">value</a>() < 0) )
|
||||
00154 <span class="keywordflow">throw</span> std::runtime_error(<span class="stringliteral">"Invalid bitFlipRate"</span>);
|
||||
00155
|
||||
00156 <a class="code" href="classeo_value_param.html">eoValueParam<double></a> & oneBitRateParam = _parser.<a class="code" href="classeo_parameter_loader.html#a3">createParam</a>(0.01, <span class="stringliteral">"oneBitRate"</span>, <span class="stringliteral">"Relative rate for deterministic bit-flip mutation"</span>, <span class="charliteral">'d'</span>, <span class="stringliteral">"Variation Operators"</span> );
|
||||
00157 <span class="comment">// minimum check</span>
|
||||
00158 <span class="keywordflow">if</span> ( (oneBitRateParam.<a class="code" href="classeo_value_param.html#a2">value</a>() < 0) )
|
||||
00159 <span class="keywordflow">throw</span> std::runtime_error(<span class="stringliteral">"Invalid oneBitRate"</span>);
|
||||
00160
|
||||
00161 <span class="comment">// minimum check</span>
|
||||
00162 <span class="keywordtype">bool</span> bMut = <span class="keyword">true</span>;
|
||||
00163 <span class="keywordflow">if</span> (bitFlipRateParam.<a class="code" href="classeo_value_param.html#a2">value</a>()+oneBitRateParam.<a class="code" href="classeo_value_param.html#a2">value</a>()==0)
|
||||
00164 {
|
||||
00165 std::cerr << <span class="stringliteral">"Warning: no mutation"</span> << std::endl;
|
||||
00166 bMut = <span class="keyword">false</span>;
|
||||
00167 }
|
||||
00168
|
||||
00169 <span class="comment">// Create the CombinedMonOp</span>
|
||||
00170 <a class="code" href="classeo_prop_combined_mon_op.html">eoPropCombinedMonOp<EOT></a> *ptCombinedMonOp = NULL;
|
||||
00171 <a class="code" href="classeo_mon_op.html">eoMonOp<EOT></a> *ptMon = NULL;
|
||||
00172
|
||||
00173 <span class="comment">// standard bit-flip mutation for bitstring</span>
|
||||
00174 ptMon = <span class="keyword">new</span> <a class="code" href="classeo_bit_mutation.html">eoBitMutation<EOT></a>(pMutPerBitParam.<a class="code" href="classeo_value_param.html#a2">value</a>());
|
||||
00175 _state.<a class="code" href="classeo_functor_store.html#a2">storeFunctor</a>(ptMon);
|
||||
00176 <span class="comment">// create the CombinedMonOp</span>
|
||||
00177 ptCombinedMonOp = <span class="keyword">new</span> <a class="code" href="classeo_prop_combined_mon_op.html">eoPropCombinedMonOp<EOT></a>(*ptMon, bitFlipRateParam.<a class="code" href="classeo_value_param.html#a2">value</a>());
|
||||
00178
|
||||
00179 <span class="comment">// mutate exactly 1 bit per individual</span>
|
||||
00180 ptMon = <span class="keyword">new</span> <a class="code" href="classeo_det_bit_flip.html">eoDetBitFlip<EOT></a>;
|
||||
00181 _state.<a class="code" href="classeo_functor_store.html#a2">storeFunctor</a>(ptMon);
|
||||
00182 ptCombinedMonOp-><a class="code" href="classeo_prop_combined_mon_op.html#a2">add</a>(*ptMon, oneBitRateParam.<a class="code" href="classeo_value_param.html#a2">value</a>());
|
||||
00183
|
||||
00184 _state.<a class="code" href="classeo_functor_store.html#a2">storeFunctor</a>(ptCombinedMonOp);
|
||||
00185
|
||||
00186 <span class="comment">// now build the eoGenOp:</span>
|
||||
00187 <span class="comment">// to simulate SGA (crossover with proba pCross + mutation with proba pMut</span>
|
||||
00188 <span class="comment">// we must construct</span>
|
||||
00189 <span class="comment">// a sequential combination of</span>
|
||||
00190 <span class="comment">// with proba 1, a proportional combination of </span>
|
||||
00191 <span class="comment">// a QuadCopy and our crossover</span>
|
||||
00192 <span class="comment">// with proba pMut, our mutation</span>
|
||||
00193
|
||||
00194 <span class="comment">// the crossover - with probability pCross</span>
|
||||
00195 <a class="code" href="classeo_proportional_op.html">eoProportionalOp<EOT></a> * cross = <span class="keyword">new</span> <a class="code" href="classeo_proportional_op.html">eoProportionalOp<EOT></a> ;
|
||||
00196 _state.<a class="code" href="classeo_functor_store.html#a2">storeFunctor</a>(cross);
|
||||
00197 ptQuad = <span class="keyword">new</span> <a class="code" href="classeo_quad_clone_op.html">eoQuadCloneOp<EOT></a>;
|
||||
00198 _state.<a class="code" href="classeo_functor_store.html#a2">storeFunctor</a>(ptQuad);
|
||||
00199 cross-><a class="code" href="classeo_op_container.html#a3">add</a>(*ptCombinedQuadOp, pCrossParam.<a class="code" href="classeo_value_param.html#a2">value</a>()); <span class="comment">// user crossover</span>
|
||||
00200 cross-><a class="code" href="classeo_op_container.html#a3">add</a>(*ptQuad, 1-pCrossParam.<a class="code" href="classeo_value_param.html#a2">value</a>()); <span class="comment">// clone operator</span>
|
||||
00201
|
||||
00202 <span class="comment">// now the sequential</span>
|
||||
00203 <a class="code" href="classeo_sequential_op.html">eoSequentialOp<EOT></a> *op = <span class="keyword">new</span> <a class="code" href="classeo_sequential_op.html">eoSequentialOp<EOT></a>;
|
||||
00204 _state.<a class="code" href="classeo_functor_store.html#a2">storeFunctor</a>(op);
|
||||
00205 op-><a class="code" href="classeo_op_container.html#a3">add</a>(*cross, 1.0); <span class="comment">// always crossover (but clone with prob 1-pCross</span>
|
||||
00206 op-><a class="code" href="classeo_op_container.html#a3">add</a>(*ptCombinedMonOp, pMutParam.<a class="code" href="classeo_value_param.html#a2">value</a>());
|
||||
00207
|
||||
00208 <span class="comment">// that's it!</span>
|
||||
00209 <span class="keywordflow">return</span> *op;
|
||||
00210 }
|
||||
00211 <span class="preprocessor">#endif</span>
|
||||
</pre></div><hr size="1"><address style="align: right;"><small>Generated on Thu Oct 19 05:06:41 2006 for EO by
|
||||
<a href="http://www.doxygen.org/index.html">
|
||||
<img src="doxygen.png" alt="doxygen" align="middle" border="0"></a> 1.3.9.1 </small></address>
|
||||
</body>
|
||||
</html>
|
||||
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