Lesson 6 : parallel transformation
git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@747 331e1502-861f-0410-8da2-ba01fb791d7f
This commit is contained in:
canape
parent
cf4700c2be
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6 changed files with 506 additions and 1 deletions
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@ -11,6 +11,6 @@ SET(TSP_BINARY_DIR ${ParadisEO-PEO_BINARY_DIR}/tutorial/examples/tsp)
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### 2) Where must cmake go now ?
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### 2) Where must cmake go now ?
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######################################################################################
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######################################################################################
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SUBDIRS(examples Lesson1 Lesson2 Lesson3 Lesson4 Lesson5 Walkthrough)
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SUBDIRS(examples Lesson1 Lesson2 Lesson3 Lesson4 Lesson5 Lesson6 Walkthrough)
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######################################################################################
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######################################################################################
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99
trunk/paradiseo-peo/tutorial/Lesson6/CMakeLists.txt
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99
trunk/paradiseo-peo/tutorial/Lesson6/CMakeLists.txt
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@ -0,0 +1,99 @@
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######################################################################################
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### 0) Set the compiler and define targets to easily run the lessons
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######################################################################################
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SET (CMAKE_CXX_COMPILER mpicxx)
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ADD_CUSTOM_TARGET(install DEPENDS ${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson6/lesson.param ${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson6/schema.xml)
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ADD_CUSTOM_COMMAND(
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TARGET install
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POST_BUILD
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COMMAND ${CMAKE_COMMAND}
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ARGS -E copy_if_different
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${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson6/lesson.param
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${ParadisEO-PEO_BINARY_DIR}/tutorial/Lesson6)
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ADD_CUSTOM_COMMAND(
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TARGET install
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POST_BUILD
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COMMAND ${CMAKE_COMMAND}
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ARGS -E copy_if_different
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${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson6/schema.xml
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${ParadisEO-PEO_BINARY_DIR}/tutorial/Lesson6)
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######################################################################################
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######################################################################################
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### 1) Include the sources
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######################################################################################
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INCLUDE_DIRECTORIES(${EO_SRC_DIR}/src ${MO_SRC_DIR}/src ${ParadisEO-PEO_SOURCE_DIR}/src ${TSP_SRC_DIR})
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######################################################################################
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######################################################################################
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### 2) Specify where CMake can find the libraries
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######################################################################################
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IF(NOT WIN32 OR CYGWIN)
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LINK_DIRECTORIES(${EO_BIN_DIR}/lib ${ParadisEO-PEO_BINARY_DIR}/lib ${TSP_BINARY_DIR}/lib)
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ENDIF(NOT WIN32 OR CYGWIN)
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# especially for Visual Studio
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IF(WIN32 AND NOT CYGWIN)
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LINK_DIRECTORIES(${EO_BIN_DIR}\\lib\\${CMAKE_BUILD_TYPE} ${ParadisEO-PEO_BINARY_DIR}\\lib\\${CMAKE_BUILD_TYPE} ${TSP_BINARY_DIR}\\lib\\${CMAKE_BUILD_TYPE})
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ENDIF(WIN32 AND NOT CYGWIN)
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######################################################################################
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######################################################################################
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### 3) Define your target(s): just an executable here
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######################################################################################
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ADD_EXECUTABLE(tspExample main.cpp)
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ADD_DEPENDENCIES(tspExample tsp peo rmc_mpi)
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######################################################################################
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######################################################################################
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### 4) Optionnal: define properties
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######################################################################################
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SET(LESSON6_VERSION ${GLOBAL_VERSION})
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SET_TARGET_PROPERTIES(tspExample PROPERTIES VERSION "${LESSON6_VERSION}")
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######################################################################################
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######################################################################################
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### 5) Link the librairies
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######################################################################################
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TARGET_LINK_LIBRARIES(tspExample ${XML2_LIBS} tsp peo rmc_mpi eo eoutils)
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######################################################################################
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######################################################################################
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### 6) Windows advanced config - especially for Microsoft Visual Studio 8
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######################################################################################
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IF(CMAKE_CXX_COMPILER MATCHES cl)
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IF(NOT WITH_SHARED_LIBS)
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IF(CMAKE_GENERATOR STREQUAL "Visual Studio 8 2005")
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SET(CMAKE_CXX_FLAGS "/nologo /W3 /Gy")
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SET(CMAKE_CXX_FLAGS_DEBUG "/MTd /Z7 /Od")
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SET(CMAKE_CXX_FLAGS_RELEASE "/MT /O2")
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SET(CMAKE_CXX_FLAGS_MINSIZEREL "/MT /O2")
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SET(CMAKE_CXX_FLAGS_RELWITHDEBINFO "/MTd /Z7 /Od")
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SET(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} /SUBSYSTEM:CONSOLE")
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ENDIF(CMAKE_GENERATOR STREQUAL "Visual Studio 8 2005")
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ENDIF(NOT WITH_SHARED_LIBS)
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ENDIF(CMAKE_CXX_COMPILER MATCHES cl)
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######################################################################################
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12
trunk/paradiseo-peo/tutorial/Lesson6/lesson.param
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12
trunk/paradiseo-peo/tutorial/Lesson6/lesson.param
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## miscallenous parameters
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--debug=false
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## deployment schema
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--schema=schema.xml
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## parameters
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--inst=../examples/tsp/benchs/eil101.tsp
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135
trunk/paradiseo-peo/tutorial/Lesson6/main.cpp
Normal file
135
trunk/paradiseo-peo/tutorial/Lesson6/main.cpp
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@ -0,0 +1,135 @@
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/*
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* <main.cpp>
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* Copyright (C) DOLPHIN Project-Team, INRIA Futurs, 2006-2007
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* (C) OPAC Team, LIFL, 2002-2007
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*
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* Clive Canape
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*
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* This software is governed by the CeCILL license under French law and
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* abiding by the rules of distribution of free software. You can use,
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* modify and/ or redistribute the software under the terms of the CeCILL
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* license as circulated by CEA, CNRS and INRIA at the following URL
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* "http://www.cecill.info".
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*
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* As a counterpart to the access to the source code and rights to copy,
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* modify and redistribute granted by the license, users are provided only
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* with a limited warranty and the software's author, the holder of the
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* economic rights, and the successive licensors have only limited liability.
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*
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* In this respect, the user's attention is drawn to the risks associated
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* with loading, using, modifying and/or developing or reproducing the
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* software by the user in light of its specific status of free software,
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* that may mean that it is complicated to manipulate, and that also
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* therefore means that it is reserved for developers and experienced
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* professionals having in-depth computer knowledge. Users are therefore
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* encouraged to load and test the software's suitability as regards their
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* requirements in conditions enabling the security of their systems and/or
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* data to be ensured and, more generally, to use and operate it in the
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* same conditions as regards security.
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* The fact that you are presently reading this means that you have had
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* knowledge of the CeCILL license and that you accept its terms.
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*
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* ParadisEO WebSite : http://paradiseo.gforge.inria.fr
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* Contact: paradiseo-help@lists.gforge.inria.fr
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* clive.canape@inria.fr
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*/
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#include "route.h"
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#include "route_init.h"
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#include "route_eval.h"
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#include "order_xover.h"
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#include "city_swap.h"
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#include "param.h"
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#include "merge_route_eval.h"
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#include "part_route_eval.h"
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#include <peo>
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#define POP_SIZE 10
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#define NUM_GEN 100
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#define CROSS_RATE 1.0
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#define MUT_RATE 0.01
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int main( int __argc, char** __argv ) {
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// initializing the ParadisEO-PEO environment
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peo :: init( __argc, __argv );
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// processing the command line specified parameters
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loadParameters( __argc, __argv );
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// init, eval operators, EA operators -------------------------------------------------------------------------------------------------------------
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RouteInit route_init; // random init object - creates random Route objects
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RouteEval full_eval; // evaluator object - offers a fitness value for a specified Route object
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OrderXover crossover; // crossover operator - creates two offsprings out of two specified parents
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CitySwap mutation; // mutation operator - randomly mutates one gene for a specified individual
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// ------------------------------------------------------------------------------------------------------------------------------------------------
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// evolutionary algorithm components --------------------------------------------------------------------------------------------------------------
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/*
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* You can change the size of the population thanks POP_SIZE
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*
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*/
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eoPop< Route > population( POP_SIZE, route_init );
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/*
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* If you want to use a parallel evaluation : peoParaPopEval< Route > eaPopEval( full_eval );
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* Else, you can use a sequential evaluation : peoSeqPopEval< Route > eaPopEval( full_eval );
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*
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*/
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peoParaPopEval< Route > eaPopEval( full_eval );
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/*
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* Continuation criterion
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*/
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eoGenContinue< Route > eaCont( NUM_GEN );
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eoCheckPoint< Route > eaCheckpointContinue( eaCont );
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/*
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* Selection strategy
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*/
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eoRankingSelect< Route > selectionStrategy;
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eoSelectNumber< Route > eaSelect( selectionStrategy, POP_SIZE );
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/* With this transform operator, you can use a parallel crossover and a parallel mutation
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*
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* Unfortunately, if you don't use a crossover which creates two children with two parents,
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* you can't use this operator.
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* In this case, you should send a mail to : paradiseo-help@lists.gforge.inria.fr
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*
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*/
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peoParaSGATransform< Route > eaTransform( crossover, CROSS_RATE, mutation, MUT_RATE ); // ParadisEO transform operator (please remark the peo prefix) - wraps an e EO transform object
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/*
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* Replacement strategy
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*/
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eoPlusReplacement< Route > eaReplace;
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// ParadisEO-PEO evolutionary algorithm -----------------------------------------------------------------------------------------------------------
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peoEA< Route > eaAlg( eaCheckpointContinue, eaPopEval, eaSelect, eaTransform, eaReplace );
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eaAlg( population ); // specifying the initial population for the algorithm, to be iteratively evolved
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// ------------------------------------------------------------------------------------------------------------------------------------------------
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peo :: run( );
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peo :: finalize( );
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if(getNodeRank()==1)
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std::cout<<"\n\nPopulation :\n"<<population;
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return 0;
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}
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241
trunk/paradiseo-peo/tutorial/Lesson6/paradiseo-peo.lsn.doxyfile
Normal file
241
trunk/paradiseo-peo/tutorial/Lesson6/paradiseo-peo.lsn.doxyfile
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@ -0,0 +1,241 @@
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# Doxyfile 1.4.7
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||||||
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#---------------------------------------------------------------------------
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||||||
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# Project related configuration options
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||||||
|
#---------------------------------------------------------------------------
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||||||
|
PROJECT_NAME = "ParadisEO-PEO Lesson6"
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PROJECT_NUMBER = 0.1
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||||||
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OUTPUT_DIRECTORY = ../../../doc/html/lesson6
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|
CREATE_SUBDIRS = NO
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|
OUTPUT_LANGUAGE = English
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USE_WINDOWS_ENCODING = NO
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||||||
|
BRIEF_MEMBER_DESC = YES
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||||||
|
REPEAT_BRIEF = YES
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||||||
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ABBREVIATE_BRIEF = "The $name class" \
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"The $name widget" \
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"The $name file" \
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is \
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provides \
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||||||
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specifies \
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contains \
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represents \
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||||||
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a \
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||||||
|
an \
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||||||
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the
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||||||
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ALWAYS_DETAILED_SEC = NO
|
||||||
|
INLINE_INHERITED_MEMB = NO
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||||||
|
FULL_PATH_NAMES = NO
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||||||
|
STRIP_FROM_PATH =
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||||||
|
STRIP_FROM_INC_PATH =
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||||||
|
SHORT_NAMES = NO
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||||||
|
JAVADOC_AUTOBRIEF = YES
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||||||
|
MULTILINE_CPP_IS_BRIEF = NO
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||||||
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DETAILS_AT_TOP = NO
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||||||
|
INHERIT_DOCS = YES
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||||||
|
SEPARATE_MEMBER_PAGES = NO
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||||||
|
TAB_SIZE = 8
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||||||
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ALIASES =
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||||||
|
OPTIMIZE_OUTPUT_FOR_C = NO
|
||||||
|
OPTIMIZE_OUTPUT_JAVA = NO
|
||||||
|
BUILTIN_STL_SUPPORT = NO
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||||||
|
DISTRIBUTE_GROUP_DOC = NO
|
||||||
|
SUBGROUPING = YES
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||||||
|
#---------------------------------------------------------------------------
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||||||
|
# Build related configuration options
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||||||
|
#---------------------------------------------------------------------------
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||||||
|
EXTRACT_ALL = NO
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||||||
|
EXTRACT_PRIVATE = YES
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||||||
|
EXTRACT_STATIC = YES
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||||||
|
EXTRACT_LOCAL_CLASSES = YES
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||||||
|
EXTRACT_LOCAL_METHODS = NO
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||||||
|
HIDE_UNDOC_MEMBERS = YES
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||||||
|
HIDE_UNDOC_CLASSES = YES
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||||||
|
HIDE_FRIEND_COMPOUNDS = NO
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||||||
|
HIDE_IN_BODY_DOCS = NO
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||||||
|
INTERNAL_DOCS = NO
|
||||||
|
CASE_SENSE_NAMES = YES
|
||||||
|
HIDE_SCOPE_NAMES = NO
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||||||
|
SHOW_INCLUDE_FILES = YES
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||||||
|
INLINE_INFO = YES
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||||||
|
SORT_MEMBER_DOCS = NO
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||||||
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SORT_BRIEF_DOCS = NO
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||||||
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SORT_BY_SCOPE_NAME = NO
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||||||
|
GENERATE_TODOLIST = YES
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||||||
|
GENERATE_TESTLIST = YES
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||||||
|
GENERATE_BUGLIST = YES
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||||||
|
GENERATE_DEPRECATEDLIST= YES
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||||||
|
ENABLED_SECTIONS =
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||||||
|
MAX_INITIALIZER_LINES = 30
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||||||
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SHOW_USED_FILES = YES
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||||||
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SHOW_DIRECTORIES = NO
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||||||
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FILE_VERSION_FILTER =
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||||||
|
#---------------------------------------------------------------------------
|
||||||
|
# configuration options related to warning and progress messages
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||||||
|
#---------------------------------------------------------------------------
|
||||||
|
QUIET = YES
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||||||
|
WARNINGS = YES
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||||||
|
WARN_IF_UNDOCUMENTED = YES
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||||||
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WARN_IF_DOC_ERROR = YES
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||||||
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WARN_NO_PARAMDOC = NO
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||||||
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WARN_FORMAT = "$file:$line: $text"
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||||||
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WARN_LOGFILE =
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||||||
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#---------------------------------------------------------------------------
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||||||
|
# configuration options related to the input files
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||||||
|
#---------------------------------------------------------------------------
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||||||
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INPUT = .
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||||||
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FILE_PATTERNS = *.cpp \
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||||||
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*.h \
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||||||
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NEWS \
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||||||
|
README
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||||||
|
RECURSIVE = YES
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||||||
|
EXCLUDE =
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||||||
|
EXCLUDE_SYMLINKS = NO
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||||||
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EXCLUDE_PATTERNS =
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||||||
|
EXAMPLE_PATH =
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||||||
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EXAMPLE_PATTERNS = *
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||||||
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EXAMPLE_RECURSIVE = NO
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||||||
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IMAGE_PATH = ../../docs/images
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||||||
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INPUT_FILTER =
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||||||
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FILTER_PATTERNS =
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||||||
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FILTER_SOURCE_FILES = NO
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||||||
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#---------------------------------------------------------------------------
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||||||
|
# configuration options related to source browsing
|
||||||
|
#---------------------------------------------------------------------------
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||||||
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SOURCE_BROWSER = YES
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||||||
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INLINE_SOURCES = NO
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||||||
|
STRIP_CODE_COMMENTS = YES
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||||||
|
REFERENCED_BY_RELATION = YES
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||||||
|
REFERENCES_RELATION = YES
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||||||
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REFERENCES_LINK_SOURCE = YES
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||||||
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USE_HTAGS = NO
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||||||
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VERBATIM_HEADERS = YES
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||||||
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#---------------------------------------------------------------------------
|
||||||
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# configuration options related to the alphabetical class index
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||||||
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#---------------------------------------------------------------------------
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||||||
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ALPHABETICAL_INDEX = YES
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||||||
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COLS_IN_ALPHA_INDEX = 3
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||||||
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IGNORE_PREFIX = peo
|
||||||
|
#---------------------------------------------------------------------------
|
||||||
|
# configuration options related to the HTML output
|
||||||
|
#---------------------------------------------------------------------------
|
||||||
|
GENERATE_HTML = YES
|
||||||
|
HTML_OUTPUT = html
|
||||||
|
HTML_FILE_EXTENSION = .html
|
||||||
|
HTML_HEADER =
|
||||||
|
HTML_FOOTER =
|
||||||
|
HTML_STYLESHEET =
|
||||||
|
HTML_ALIGN_MEMBERS = YES
|
||||||
|
GENERATE_HTMLHELP = NO
|
||||||
|
CHM_FILE =
|
||||||
|
HHC_LOCATION =
|
||||||
|
GENERATE_CHI = NO
|
||||||
|
BINARY_TOC = NO
|
||||||
|
TOC_EXPAND = NO
|
||||||
|
DISABLE_INDEX = NO
|
||||||
|
ENUM_VALUES_PER_LINE = 4
|
||||||
|
GENERATE_TREEVIEW = YES
|
||||||
|
TREEVIEW_WIDTH = 250
|
||||||
|
#---------------------------------------------------------------------------
|
||||||
|
# configuration options related to the LaTeX output
|
||||||
|
#---------------------------------------------------------------------------
|
||||||
|
GENERATE_LATEX = YES
|
||||||
|
LATEX_OUTPUT = latex
|
||||||
|
LATEX_CMD_NAME = latex
|
||||||
|
MAKEINDEX_CMD_NAME = makeindex
|
||||||
|
COMPACT_LATEX = NO
|
||||||
|
PAPER_TYPE = a4wide
|
||||||
|
EXTRA_PACKAGES =
|
||||||
|
LATEX_HEADER =
|
||||||
|
PDF_HYPERLINKS = YES
|
||||||
|
USE_PDFLATEX = YES
|
||||||
|
LATEX_BATCHMODE = NO
|
||||||
|
LATEX_HIDE_INDICES = NO
|
||||||
|
#---------------------------------------------------------------------------
|
||||||
|
# configuration options related to the RTF output
|
||||||
|
#---------------------------------------------------------------------------
|
||||||
|
GENERATE_RTF = NO
|
||||||
|
RTF_OUTPUT = rtf
|
||||||
|
COMPACT_RTF = NO
|
||||||
|
RTF_HYPERLINKS = NO
|
||||||
|
RTF_STYLESHEET_FILE =
|
||||||
|
RTF_EXTENSIONS_FILE =
|
||||||
|
#---------------------------------------------------------------------------
|
||||||
|
# configuration options related to the man page output
|
||||||
|
#---------------------------------------------------------------------------
|
||||||
|
GENERATE_MAN = YES
|
||||||
|
MAN_OUTPUT = man
|
||||||
|
MAN_EXTENSION = .3
|
||||||
|
MAN_LINKS = NO
|
||||||
|
#---------------------------------------------------------------------------
|
||||||
|
# configuration options related to the XML output
|
||||||
|
#---------------------------------------------------------------------------
|
||||||
|
GENERATE_XML = NO
|
||||||
|
XML_OUTPUT = xml
|
||||||
|
XML_SCHEMA =
|
||||||
|
XML_DTD =
|
||||||
|
XML_PROGRAMLISTING = YES
|
||||||
|
#---------------------------------------------------------------------------
|
||||||
|
# configuration options for the AutoGen Definitions output
|
||||||
|
#---------------------------------------------------------------------------
|
||||||
|
GENERATE_AUTOGEN_DEF = NO
|
||||||
|
#---------------------------------------------------------------------------
|
||||||
|
# configuration options related to the Perl module output
|
||||||
|
#---------------------------------------------------------------------------
|
||||||
|
GENERATE_PERLMOD = NO
|
||||||
|
PERLMOD_LATEX = NO
|
||||||
|
PERLMOD_PRETTY = YES
|
||||||
|
PERLMOD_MAKEVAR_PREFIX =
|
||||||
|
#---------------------------------------------------------------------------
|
||||||
|
# Configuration options related to the preprocessor
|
||||||
|
#---------------------------------------------------------------------------
|
||||||
|
ENABLE_PREPROCESSING = YES
|
||||||
|
MACRO_EXPANSION = NO
|
||||||
|
EXPAND_ONLY_PREDEF = NO
|
||||||
|
SEARCH_INCLUDES = YES
|
||||||
|
INCLUDE_PATH =
|
||||||
|
INCLUDE_FILE_PATTERNS =
|
||||||
|
PREDEFINED =
|
||||||
|
EXPAND_AS_DEFINED =
|
||||||
|
SKIP_FUNCTION_MACROS = YES
|
||||||
|
#---------------------------------------------------------------------------
|
||||||
|
# Configuration::additions related to external references
|
||||||
|
#---------------------------------------------------------------------------
|
||||||
|
TAGFILES = ../../../paradiseo-mo/docs/eo.doxytag=../../../../../paradiseo-mo/docs/html \
|
||||||
|
../../../paradiseo-mo/docs/mo.doxytag=../../../../../paradiseo-mo/docs/html \
|
||||||
|
../../docs/paradiseo-peo.doxytag=../../ \
|
||||||
|
../shared/paradiseo-peo-lsn-shared.doxytag=../../lsnshared/html
|
||||||
|
GENERATE_TAGFILE = ../../docs/paradiseo-peo-lsn.doxytag
|
||||||
|
ALLEXTERNALS = NO
|
||||||
|
EXTERNAL_GROUPS = YES
|
||||||
|
PERL_PATH = /usr/bin/perl
|
||||||
|
#---------------------------------------------------------------------------
|
||||||
|
# Configuration options related to the dot tool
|
||||||
|
#---------------------------------------------------------------------------
|
||||||
|
CLASS_DIAGRAMS = YES
|
||||||
|
HIDE_UNDOC_RELATIONS = YES
|
||||||
|
HAVE_DOT = NO
|
||||||
|
CLASS_GRAPH = YES
|
||||||
|
COLLABORATION_GRAPH = YES
|
||||||
|
GROUP_GRAPHS = YES
|
||||||
|
UML_LOOK = NO
|
||||||
|
TEMPLATE_RELATIONS = NO
|
||||||
|
INCLUDE_GRAPH = YES
|
||||||
|
INCLUDED_BY_GRAPH = YES
|
||||||
|
CALL_GRAPH = NO
|
||||||
|
CALLER_GRAPH = NO
|
||||||
|
GRAPHICAL_HIERARCHY = YES
|
||||||
|
DIRECTORY_GRAPH = YES
|
||||||
|
DOT_IMAGE_FORMAT = png
|
||||||
|
DOT_PATH =
|
||||||
|
DOTFILE_DIRS =
|
||||||
|
MAX_DOT_GRAPH_WIDTH = 1024
|
||||||
|
MAX_DOT_GRAPH_HEIGHT = 1024
|
||||||
|
MAX_DOT_GRAPH_DEPTH = 0
|
||||||
|
DOT_TRANSPARENT = NO
|
||||||
|
DOT_MULTI_TARGETS = NO
|
||||||
|
GENERATE_LEGEND = YES
|
||||||
|
DOT_CLEANUP = YES
|
||||||
|
#---------------------------------------------------------------------------
|
||||||
|
# Configuration::additions related to the search engine
|
||||||
|
#---------------------------------------------------------------------------
|
||||||
|
SEARCHENGINE = YES
|
||||||
18
trunk/paradiseo-peo/tutorial/Lesson6/schema.xml
Normal file
18
trunk/paradiseo-peo/tutorial/Lesson6/schema.xml
Normal file
|
|
@ -0,0 +1,18 @@
|
||||||
|
<?xml version="1.0"?>
|
||||||
|
|
||||||
|
<schema>
|
||||||
|
<group scheduler="0">
|
||||||
|
<node name="0" num_workers="0">
|
||||||
|
</node>
|
||||||
|
|
||||||
|
<node name="1" num_workers="0">
|
||||||
|
<runner>1</runner>
|
||||||
|
</node>
|
||||||
|
|
||||||
|
<node name="2" num_workers="1">
|
||||||
|
</node>
|
||||||
|
<node name="3" num_workers="1">
|
||||||
|
</node>
|
||||||
|
</group>
|
||||||
|
</schema>
|
||||||
|
|
||||||
Loading…
Add table
Add a link
Reference in a new issue