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git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1482 331e1502-861f-0410-8da2-ba01fb791d7f

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jhumeau 2009-03-06 15:43:48 +00:00
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24
tags/paradiseo1.2-patch1/paradiseo-peo/tutorial/CMakeLists.txt
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#
#####################################################################################
### 1) Definitions (required for tsp target)
######################################################################################
SET(TSP_SRC_DIR ${ParadisEO-PEO_SOURCE_DIR}/tutorial/examples/tsp)
SET(TSP_BINARY_DIR ${ParadisEO-PEO_BINARY_DIR}/tutorial/examples/tsp)
SET(FLOWSHOP_SRC_DIR "${MOEO_SRC_DIR}/tutorial/examples/flowshop" CACHE PATH "Flowshop source directory" FORCE)
SET(FLOWSHOP_BIN_DIR "${MOEO_BIN_DIR}/tutorial/examples/flowshop" CACHE PATH "Flowshop binary directory" FORCE)
######################################################################################
######################################################################################
### 2) Where must cmake go now ?
######################################################################################
ADD_SUBDIRECTORY(examples)
ADD_SUBDIRECTORY(Lesson1)
ADD_SUBDIRECTORY(Lesson2)
ADD_SUBDIRECTORY(Lesson3)
ADD_SUBDIRECTORY(Lesson4)
ADD_SUBDIRECTORY(Lesson5)
ADD_SUBDIRECTORY(Lesson6)
######################################################################################

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tags/paradiseo1.2-patch1/paradiseo-peo/tutorial/Lesson1/CMakeLists.txt
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######################################################################################
### 0) Set the compiler and define targets to easily run the lessons
######################################################################################
SET (CMAKE_CXX_COMPILER mpicxx)
#ADD_CUSTOM_TARGET(install DEPENDS ${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson1/param ${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson1/schema.xml)
#ADD_CUSTOM_COMMAND(
# TARGET install
# POST_BUILD
# COMMAND ${CMAKE_COMMAND}
# ARGS -E copy_if_different
# ${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson1/param
# ${ParadisEO-PEO_BINARY_DIR}/tutorial/Lesson1)
#ADD_CUSTOM_COMMAND(
# TARGET install
# POST_BUILD
# COMMAND ${CMAKE_COMMAND}
# ARGS -E copy_if_different
# ${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson1/schema.xml
# ${ParadisEO-PEO_BINARY_DIR}/tutorial/Lesson1)
EXECUTE_PROCESS(
COMMAND ${CMAKE_COMMAND} -E copy_if_different
${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson1/param
${ParadisEO-PEO_BINARY_DIR}/tutorial/Lesson1
COMMAND ${CMAKE_COMMAND} -E copy_if_different
${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson1/schema.xml
${ParadisEO-PEO_BINARY_DIR}/tutorial/Lesson1
)
######################################################################################
######################################################################################
### 1) Include the sources
######################################################################################
INCLUDE_DIRECTORIES(${EO_SRC_DIR}/src ${MOEO_SRC_DIR}/src ${MO_SRC_DIR}/src ${ParadisEO-PEO_SOURCE_DIR}/src)
######################################################################################
######################################################################################
### 2) Specify where CMake can find the libraries
######################################################################################
LINK_DIRECTORIES(${EO_BIN_DIR}/lib ${ParadisEO-PEO_BINARY_DIR}/lib)
######################################################################################
######################################################################################
### 3) Define your target(s): just an executable here
######################################################################################
ADD_EXECUTABLE(pso mainPSO.cpp)
ADD_DEPENDENCIES(pso peo rmc_mpi)
ADD_EXECUTABLE(ea mainEA.cpp)
ADD_DEPENDENCIES(ea peo rmc_mpi)
######################################################################################
######################################################################################
### 4) Optionnal: define properties
######################################################################################
SET(LESSON1_VERSION ${GLOBAL_VERSION})
SET_TARGET_PROPERTIES(pso PROPERTIES VERSION "${LESSON1_VERSION}")
SET_TARGET_PROPERTIES(ea PROPERTIES VERSION "${LESSON1_VERSION}")
######################################################################################
######################################################################################
### 5) Link the librairies
######################################################################################
TARGET_LINK_LIBRARIES(pso ${XML2_LIBS} peo rmc_mpi eo eoutils peo)
TARGET_LINK_LIBRARIES(ea ${XML2_LIBS} peo rmc_mpi eo eoutils peo)
######################################################################################

116
tags/paradiseo1.2-patch1/paradiseo-peo/tutorial/Lesson1/mainEA.cpp
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/*
* <mainEA.cpp>
* Copyright (C) DOLPHIN Project-Team, INRIA Futurs, 2006-2008
* (C) OPAC Team, INRIA, 2008
*
* Clive Canape
*
* This software is governed by the CeCILL license under French law and
* abiding by the rules of distribution of free software. You can use,
* modify and/ or redistribute the software under the terms of the CeCILL
* license as circulated by CEA, CNRS and INRIA at the following URL
* "http://www.cecill.info".
*
* As a counterpart to the access to the source code and rights to copy,
* modify and redistribute granted by the license, users are provided only
* with a limited warranty and the software's author, the holder of the
* economic rights, and the successive licensors have only limited liability.
*
* In this respect, the user's attention is drawn to the risks associated
* with loading, using, modifying and/or developing or reproducing the
* software by the user in light of its specific status of free software,
* that may mean that it is complicated to manipulate, and that also
* therefore means that it is reserved for developers and experienced
* professionals having in-depth computer knowledge. Users are therefore
* encouraged to load and test the software's suitability as regards their
* requirements in conditions enabling the security of their systems and/or
* data to be ensured and, more generally, to use and operate it in the
* same conditions as regards security.
* The fact that you are presently reading this means that you have had
* knowledge of the CeCILL license and that you accept its terms.
*
* ParadisEO WebSite : http://paradiseo.gforge.inria.fr
* Contact: paradiseo-help@lists.gforge.inria.fr
*
*/
#include <peo>
#include <es.h>
typedef eoReal<double> Indi;
//Evaluation function
double f (const Indi & _indi)
{
// Rosenbrock function f(x) = 100*(x[1]-x[0]^2)^2+(1-x[0])^2
// => optimal : f* = 0 , with x* =(1,1)
double sum;
sum=_indi[1]-pow(_indi[0],2);
sum=100*pow(sum,2);
sum+=pow((1-_indi[0]),2);
return (-sum);
}
int main (int __argc, char *__argv[])
{
// Initialization of the parallel environment : thanks this instruction, ParadisEO-PEO can initialize himself
peo :: init( __argc, __argv );
//Parameters
eoParser parser(__argc, __argv);
unsigned int POP_SIZE = parser.createParam((unsigned int)(20), "popSize", "Population size",'P',"Param").value();
unsigned int MAX_GEN = parser.createParam((unsigned int)(100), "maxGen", "Maximum number of generations",'G',"Param").value();
double EPSILON = parser.createParam(0.01, "mutEpsilon", "epsilon for mutation",'e',"Param").value();
double CROSS_RATE = parser.createParam(0.25, "pCross", "Crossover probability",'C',"Param").value();
double MUT_RATE = parser.createParam(0.35, "pMut", "Mutation probability",'M',"Param").value();
unsigned int VEC_SIZE = parser.createParam((unsigned int)(2), "vecSize", "Vector size",'V',"Param").value();
double INIT_POSITION_MIN = parser.createParam(-2.0, "pMin", "Init position min",'N',"Param").value();
double INIT_POSITION_MAX = parser.createParam(2.0, "pMax", "Init position max",'X',"Param").value();
rng.reseed (time(0));
// Stopping
eoGenContinue < Indi > genContPara (MAX_GEN);
eoCombinedContinue <Indi> continuatorPara (genContPara);
eoCheckPoint<Indi> checkpoint(continuatorPara);
// For a parallel evaluation
peoEvalFunc<Indi> plainEval(f);
peoPopEval <Indi> eval(plainEval);
// Initialization
eoUniformGenerator < double >uGen (INIT_POSITION_MIN, INIT_POSITION_MAX);
eoInitFixedLength < Indi > random (VEC_SIZE, uGen);
// Selection
eoRankingSelect<Indi> selectionStrategy;
eoSelectNumber<Indi> select(selectionStrategy,POP_SIZE);
// Transformation
eoSegmentCrossover<Indi> crossover;
eoUniformMutation<Indi> mutation(EPSILON);
eoSGATransform<Indi> transform(crossover,CROSS_RATE,mutation,MUT_RATE);
// Replacement
eoPlusReplacement<Indi> replace;
// Creation of the population
eoPop < Indi > pop;
pop.append (POP_SIZE, random);
// Algorithm
eoEasyEA< Indi > eaAlg( checkpoint, eval, select, transform, replace );
//Parallel algorithm
peoWrapper parallelEA( eaAlg, pop);
eval.setOwner(parallelEA);
peo :: run();
peo :: finalize();
if (getNodeRank()==1)
{
pop.sort();
std::cout << "Final population :\n" << pop << std::endl;
}
}

123
tags/paradiseo1.2-patch1/paradiseo-peo/tutorial/Lesson1/mainPSO.cpp
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@ -1,123 +0,0 @@
/*
* <mainPSO.cpp>
* Copyright (C) DOLPHIN Project-Team, INRIA Futurs, 2006-2008
* (C) OPAC Team, INRIA, 2008
*
* Clive Canape
*
* This software is governed by the CeCILL license under French law and
* abiding by the rules of distribution of free software. You can use,
* modify and/ or redistribute the software under the terms of the CeCILL
* license as circulated by CEA, CNRS and INRIA at the following URL
* "http://www.cecill.info".
*
* As a counterpart to the access to the source code and rights to copy,
* modify and redistribute granted by the license, users are provided only
* with a limited warranty and the software's author, the holder of the
* economic rights, and the successive licensors have only limited liability.
*
* In this respect, the user's attention is drawn to the risks associated
* with loading, using, modifying and/or developing or reproducing the
* software by the user in light of its specific status of free software,
* that may mean that it is complicated to manipulate, and that also
* therefore means that it is reserved for developers and experienced
* professionals having in-depth computer knowledge. Users are therefore
* encouraged to load and test the software's suitability as regards their
* requirements in conditions enabling the security of their systems and/or
* data to be ensured and, more generally, to use and operate it in the
* same conditions as regards security.
* The fact that you are presently reading this means that you have had
* knowledge of the CeCILL license and that you accept its terms.
*
* ParadisEO WebSite : http://paradiseo.gforge.inria.fr
* Contact: paradiseo-help@lists.gforge.inria.fr
*
*/
#include <peo>
typedef eoRealParticle < double >Indi;
//Evaluation function
double f (const Indi & _indi)
{
// Rosenbrock function f(x) = 100*(x[1]-x[0]^2)^2+(1-x[0])^2
// => optimal : f* = 0 , with x* =(1,1)
double sum;
sum=_indi[1]-pow(_indi[0],2);
sum=100*pow(sum,2);
sum+=pow((1-_indi[0]),2);
return (-sum);
}
int main (int __argc, char *__argv[])
{
// Initialization of the parallel environment : thanks this instruction, ParadisEO-PEO can initialize himself
peo :: init( __argc, __argv );
//Parameters
eoParser parser(__argc, __argv);
unsigned int POP_SIZE = parser.createParam((unsigned int)(20), "popSize", "Population size",'P',"Param").value();
unsigned int MAX_GEN = parser.createParam((unsigned int)(100), "maxGen", "Maximum number of generations",'G',"Param").value();
unsigned int VEC_SIZE = parser.createParam((unsigned int)(2), "vecSize", "Vector size",'V',"Param").value();
double INIT_POSITION_MIN = parser.createParam(-2.0, "pMin", "Init position min",'N',"Param").value();
double INIT_POSITION_MAX = parser.createParam(2.0, "pMax", "Init position max",'X',"Param").value();
double INIT_VELOCITY_MIN = parser.createParam(-1.0, "vMin", "Init velocity min",'n',"Param").value();
double INIT_VELOCITY_MAX = parser.createParam(1.0, "vMax", "Init velocity max",'x',"Param").value();
double weight = parser.createParam(1.0, "weight", "Weight",'w',"Param").value();
double C1 = parser.createParam(0.5, "c1", "C1",'1',"Param").value();
double C2 = parser.createParam(2.0, "c2t", "C2",'2',"Param").value();
unsigned int NEIGHBORHOOD_SIZE = parser.createParam((unsigned int)(6), "neighSize", "Neighborhood size",'H',"Param").value();
rng.reseed (time(0));
// Stopping
eoGenContinue < Indi > genContPara (MAX_GEN);
eoCombinedContinue <Indi> continuatorPara (genContPara);
eoCheckPoint<Indi> checkpoint(continuatorPara);
// For a parallel evaluation
peoEvalFunc<Indi, double, const Indi& > plainEval(f);
peoPopEval< Indi > eval(plainEval);
// Initialization
eoUniformGenerator < double >uGen (INIT_POSITION_MIN, INIT_POSITION_MAX);
eoInitFixedLength < Indi > random (VEC_SIZE, uGen);
// Velocity
eoUniformGenerator < double >sGen (INIT_VELOCITY_MIN, INIT_VELOCITY_MAX);
eoVelocityInitFixedLength < Indi > veloRandom (VEC_SIZE, sGen);
// Initializing the best
eoFirstIsBestInit < Indi > localInit;
// Flight
eoRealVectorBounds bndsFlight(VEC_SIZE,INIT_POSITION_MIN,INIT_POSITION_MAX);
eoStandardFlight < Indi > flight(bndsFlight);
// Creation of the population
eoPop < Indi > pop;
pop.append (POP_SIZE, random);
// Topology
eoLinearTopology<Indi> topology(NEIGHBORHOOD_SIZE);
eoRealVectorBounds bnds(VEC_SIZE,INIT_VELOCITY_MIN,INIT_VELOCITY_MAX);
eoStandardVelocity < Indi > velocity (topology,weight,C1,C2,bnds);
// Initialization
eoInitializer <Indi> init(eval,veloRandom,localInit,topology,pop);
//Parallel algorithm
eoSyncEasyPSO <Indi> psa(init,checkpoint,eval, velocity, flight);
peoWrapper parallelPSO( psa, pop);
eval.setOwner(parallelPSO);
peo :: run();
peo :: finalize();
if (getNodeRank()==1)
{
pop.sort();
std::cout << "Final population :\n" << pop << std::endl;
}
}

242
tags/paradiseo1.2-patch1/paradiseo-peo/tutorial/Lesson1/paradiseo-peo-lsn.doxyfile
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# Doxyfile 1.4.7
#---------------------------------------------------------------------------
# Project related configuration options
#---------------------------------------------------------------------------
PROJECT_NAME = "ParadisEO-PEO Lesson1"
PROJECT_NUMBER = 0.1
OUTPUT_DIRECTORY = ../../../doc/html/lesson1
CREATE_SUBDIRS = NO
OUTPUT_LANGUAGE = English
USE_WINDOWS_ENCODING = NO
BRIEF_MEMBER_DESC = YES
REPEAT_BRIEF = YES
ABBREVIATE_BRIEF = "The $name class" \
"The $name widget" \
"The $name file" \
is \
provides \
specifies \
contains \
represents \
a \
an \
the
ALWAYS_DETAILED_SEC = NO
INLINE_INHERITED_MEMB = NO
FULL_PATH_NAMES = NO
STRIP_FROM_PATH =
STRIP_FROM_INC_PATH =
SHORT_NAMES = NO
JAVADOC_AUTOBRIEF = YES
MULTILINE_CPP_IS_BRIEF = NO
DETAILS_AT_TOP = NO
INHERIT_DOCS = YES
SEPARATE_MEMBER_PAGES = NO
TAB_SIZE = 8
ALIASES =
OPTIMIZE_OUTPUT_FOR_C = NO
OPTIMIZE_OUTPUT_JAVA = NO
BUILTIN_STL_SUPPORT = NO
DISTRIBUTE_GROUP_DOC = NO
SUBGROUPING = YES
#---------------------------------------------------------------------------
# Build related configuration options
#---------------------------------------------------------------------------
EXTRACT_ALL = NO
EXTRACT_PRIVATE = YES
EXTRACT_STATIC = YES
EXTRACT_LOCAL_CLASSES = YES
EXTRACT_LOCAL_METHODS = NO
HIDE_UNDOC_MEMBERS = YES
HIDE_UNDOC_CLASSES = YES
HIDE_FRIEND_COMPOUNDS = NO
HIDE_IN_BODY_DOCS = NO
INTERNAL_DOCS = NO
CASE_SENSE_NAMES = YES
HIDE_SCOPE_NAMES = NO
SHOW_INCLUDE_FILES = YES
INLINE_INFO = YES
SORT_MEMBER_DOCS = NO
SORT_BRIEF_DOCS = NO
SORT_BY_SCOPE_NAME = NO
GENERATE_TODOLIST = YES
GENERATE_TESTLIST = YES
GENERATE_BUGLIST = YES
GENERATE_DEPRECATEDLIST= YES
ENABLED_SECTIONS =
MAX_INITIALIZER_LINES = 30
SHOW_USED_FILES = YES
SHOW_DIRECTORIES = NO
FILE_VERSION_FILTER =
#---------------------------------------------------------------------------
# configuration options related to warning and progress messages
#---------------------------------------------------------------------------
QUIET = YES
WARNINGS = YES
WARN_IF_UNDOCUMENTED = YES
WARN_IF_DOC_ERROR = YES
WARN_NO_PARAMDOC = NO
WARN_FORMAT = "$file:$line: $text"
WARN_LOGFILE =
#---------------------------------------------------------------------------
# configuration options related to the input files
#---------------------------------------------------------------------------
INPUT = .
FILE_PATTERNS = *.cpp \
*.h \
NEWS \
README
RECURSIVE = YES
EXCLUDE =
EXCLUDE_SYMLINKS = NO
EXCLUDE_PATTERNS =
EXAMPLE_PATH =
EXAMPLE_PATTERNS = *
EXAMPLE_RECURSIVE = NO
IMAGE_PATH = ../../docs/images
INPUT_FILTER =
FILTER_PATTERNS =
FILTER_SOURCE_FILES = NO
#---------------------------------------------------------------------------
# configuration options related to source browsing
#---------------------------------------------------------------------------
SOURCE_BROWSER = YES
INLINE_SOURCES = NO
STRIP_CODE_COMMENTS = YES
REFERENCED_BY_RELATION = YES
REFERENCES_RELATION = YES
REFERENCES_LINK_SOURCE = YES
USE_HTAGS = NO
VERBATIM_HEADERS = YES
#---------------------------------------------------------------------------
# configuration options related to the alphabetical class index
#---------------------------------------------------------------------------
ALPHABETICAL_INDEX = YES
COLS_IN_ALPHA_INDEX = 3
IGNORE_PREFIX = peo
#---------------------------------------------------------------------------
# configuration options related to the HTML output
#---------------------------------------------------------------------------
GENERATE_HTML = YES
HTML_OUTPUT = html
HTML_FILE_EXTENSION = .html
HTML_HEADER =
HTML_FOOTER =
HTML_STYLESHEET =
HTML_ALIGN_MEMBERS = YES
GENERATE_HTMLHELP = NO
CHM_FILE =
HHC_LOCATION =
GENERATE_CHI = NO
BINARY_TOC = NO
TOC_EXPAND = NO
DISABLE_INDEX = NO
ENUM_VALUES_PER_LINE = 4
GENERATE_TREEVIEW = YES
TREEVIEW_WIDTH = 250
#---------------------------------------------------------------------------
# configuration options related to the LaTeX output
#---------------------------------------------------------------------------
GENERATE_LATEX = YES
LATEX_OUTPUT = latex
LATEX_CMD_NAME = latex
MAKEINDEX_CMD_NAME = makeindex
COMPACT_LATEX = NO
PAPER_TYPE = a4wide
EXTRA_PACKAGES =
LATEX_HEADER =
PDF_HYPERLINKS = YES
USE_PDFLATEX = YES
LATEX_BATCHMODE = NO
LATEX_HIDE_INDICES = NO
#---------------------------------------------------------------------------
# configuration options related to the RTF output
#---------------------------------------------------------------------------
GENERATE_RTF = NO
RTF_OUTPUT = rtf
COMPACT_RTF = NO
RTF_HYPERLINKS = NO
RTF_STYLESHEET_FILE =
RTF_EXTENSIONS_FILE =
#---------------------------------------------------------------------------
# configuration options related to the man page output
#---------------------------------------------------------------------------
GENERATE_MAN = YES
MAN_OUTPUT = man
MAN_EXTENSION = .3
MAN_LINKS = NO
#---------------------------------------------------------------------------
# configuration options related to the XML output
#---------------------------------------------------------------------------
GENERATE_XML = NO
XML_OUTPUT = xml
XML_SCHEMA =
XML_DTD =
XML_PROGRAMLISTING = YES
#---------------------------------------------------------------------------
# configuration options for the AutoGen Definitions output
#---------------------------------------------------------------------------
GENERATE_AUTOGEN_DEF = NO
#---------------------------------------------------------------------------
# configuration options related to the Perl module output
#---------------------------------------------------------------------------
GENERATE_PERLMOD = NO
PERLMOD_LATEX = NO
PERLMOD_PRETTY = YES
PERLMOD_MAKEVAR_PREFIX =
#---------------------------------------------------------------------------
# Configuration options related to the preprocessor
#---------------------------------------------------------------------------
ENABLE_PREPROCESSING = YES
MACRO_EXPANSION = NO
EXPAND_ONLY_PREDEF = NO
SEARCH_INCLUDES = YES
INCLUDE_PATH =
INCLUDE_FILE_PATTERNS =
PREDEFINED =
EXPAND_AS_DEFINED =
SKIP_FUNCTION_MACROS = YES
#---------------------------------------------------------------------------
# Configuration::additions related to external references
#---------------------------------------------------------------------------
TAGFILES = ../../../paradiseo-mo/docs/eo.doxytag=../../../../../paradiseo-mo/docs/html \
../../../paradiseo-mo/docs/mo.doxytag=../../../../../paradiseo-mo/docs/html \
../../docs/paradiseo-peo.doxytag=../../ \
../shared/paradiseo-peo-lsn-shared.doxytag=../../lsnshared/html
GENERATE_TAGFILE = ../../docs/paradiseo-peo-lsn.doxytag
ALLEXTERNALS = NO
EXTERNAL_GROUPS = YES
PERL_PATH = /usr/bin/perl
#---------------------------------------------------------------------------
# Configuration options related to the dot tool
#---------------------------------------------------------------------------
CLASS_DIAGRAMS = YES
HIDE_UNDOC_RELATIONS = YES
HAVE_DOT = NO
CLASS_GRAPH = YES
COLLABORATION_GRAPH = YES
GROUP_GRAPHS = YES
UML_LOOK = NO
TEMPLATE_RELATIONS = NO
INCLUDE_GRAPH = YES
INCLUDED_BY_GRAPH = YES
CALL_GRAPH = NO
CALLER_GRAPH = NO
GRAPHICAL_HIERARCHY = YES
DIRECTORY_GRAPH = YES
DOT_IMAGE_FORMAT = png
DOT_PATH =
DOTFILE_DIRS =
MAX_DOT_GRAPH_WIDTH = 1024
MAX_DOT_GRAPH_HEIGHT = 1024
MAX_DOT_GRAPH_DEPTH = 0
DOT_TRANSPARENT = NO
DOT_MULTI_TARGETS = NO
GENERATE_LEGEND = YES
DOT_CLEANUP = YES
#---------------------------------------------------------------------------
# Configuration::additions related to the search engine
#---------------------------------------------------------------------------
SEARCHENGINE = YES

25
tags/paradiseo1.2-patch1/paradiseo-peo/tutorial/Lesson1/param
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@ -1,25 +0,0 @@
###### Param ######
--popSize=20 # -P : Population size
--maxGen=200 # -G : Maximum number of generations
--mutEpsilon=0.01 # -e : epsilon for mutation
--pCross=0.80 # -C : Crossover probability
--pMut=0.30 # -M : Mutation probability
--vecSize=2 # -V : Vector size
--pMin=-2.0 # -N : Init position min
--pMax=2.0 # -X : Init position max
--vMin=-1.0 # -n : Init velocity min
--vMax=1.0 # -x : Init velocity max
--neighSize=6 # -H : Neighborhood size
--weight=1.0 # -w : Weight
--c1=0.5 # -1 : C1
--c2=2.0 # -2 : C2
## miscallenous parameters
--debug=false
## deployment schema
--schema=schema.xml

19
tags/paradiseo1.2-patch1/paradiseo-peo/tutorial/Lesson1/schema.xml
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<?xml version="1.0"?>
<schema>
<group scheduler="0">
<node name="0" num_workers="0">
</node>
<node name="1" num_workers="0">
<runner>1</runner>
</node>
<node name="2" num_workers="1">
</node>
<node name="3" num_workers="1">
</node>
</group>
</schema>

79
tags/paradiseo1.2-patch1/paradiseo-peo/tutorial/Lesson2/CMakeLists.txt
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@ -1,79 +0,0 @@
######################################################################################
### 0) Set the compiler and define targets to easily run the lessons
######################################################################################
SET (CMAKE_CXX_COMPILER mpicxx)
#ADD_CUSTOM_TARGET(install DEPENDS ${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson2/param ${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson2/schema.xml)
#ADD_CUSTOM_COMMAND(
# TARGET install
# POST_BUILD
# COMMAND ${CMAKE_COMMAND}
# -E copy_if_different
# ${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson2/param
# ${ParadisEO-PEO_BINARY_DIR}/tutorial/Lesson2)
#ADD_CUSTOM_COMMAND(
# TARGET install
# POST_BUILD
# COMMAND ${CMAKE_COMMAND}
# ARGS -E copy_if_different
# ${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson2/schema.xml
# ${ParadisEO-PEO_BINARY_DIR}/tutorial/Lesson2)
EXECUTE_PROCESS(
COMMAND ${CMAKE_COMMAND} -E copy_if_different
${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson2/param
${ParadisEO-PEO_BINARY_DIR}/tutorial/Lesson2
COMMAND ${CMAKE_COMMAND} -E copy_if_different
${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson2/schema.xml
${ParadisEO-PEO_BINARY_DIR}/tutorial/Lesson2
)
######################################################################################
######################################################################################
### 1) Include the sources
######################################################################################
INCLUDE_DIRECTORIES(${EO_SRC_DIR}/src ${MOEO_SRC_DIR}/src ${MO_SRC_DIR}/src ${ParadisEO-PEO_SOURCE_DIR}/src)
######################################################################################
######################################################################################
### 2) Specify where CMake can find the libraries
######################################################################################
LINK_DIRECTORIES(${EO_BIN_DIR}/lib ${ParadisEO-PEO_BINARY_DIR}/lib)
######################################################################################
######################################################################################
### 3) Define your target(s): just an executable here
######################################################################################
ADD_EXECUTABLE(ea2 mainEA.cpp)
ADD_DEPENDENCIES(ea2 peo rmc_mpi)
######################################################################################
######################################################################################
### 4) Optionnal: define properties
######################################################################################
SET(LESSON2_VERSION ${GLOBAL_VERSION})
SET_TARGET_PROPERTIES(ea2 PROPERTIES VERSION "${LESSON2_VERSION}")
######################################################################################
######################################################################################
### 5) Link the librairies
######################################################################################
TARGET_LINK_LIBRARIES(ea2 ${XML2_LIBS} peo rmc_mpi eo eoutils peo)
######################################################################################

97
tags/paradiseo1.2-patch1/paradiseo-peo/tutorial/Lesson2/mainEA.cpp
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@ -1,97 +0,0 @@
/*
* <mainEA.cpp>
* Copyright (C) DOLPHIN Project-Team, INRIA Futurs, 2006-2008
* (C) OPAC Team, INRIA, 2008
*
* Clive Canape
*
* This software is governed by the CeCILL license under French law and
* abiding by the rules of distribution of free software. You can use,
* modify and/ or redistribute the software under the terms of the CeCILL
* license as circulated by CEA, CNRS and INRIA at the following URL
* "http://www.cecill.info".
*
* As a counterpart to the access to the source code and rights to copy,
* modify and redistribute granted by the license, users are provided only
* with a limited warranty and the software's author, the holder of the
* economic rights, and the successive licensors have only limited liability.
*
* In this respect, the user's attention is drawn to the risks associated
* with loading, using, modifying and/or developing or reproducing the
* software by the user in light of its specific status of free software,
* that may mean that it is complicated to manipulate, and that also
* therefore means that it is reserved for developers and experienced
* professionals having in-depth computer knowledge. Users are therefore
* encouraged to load and test the software's suitability as regards their
* requirements in conditions enabling the security of their systems and/or
* data to be ensured and, more generally, to use and operate it in the
* same conditions as regards security.
* The fact that you are presently reading this means that you have had
* knowledge of the CeCILL license and that you accept its terms.
*
* ParadisEO WebSite : http://paradiseo.gforge.inria.fr
* Contact: paradiseo-help@lists.gforge.inria.fr
*
*/
#include <peo>
#include <es.h>
typedef eoReal<double> Indi;
double f (const Indi & _indi)
{
double sum;
sum=_indi[1]-pow(_indi[0],2);
sum=100*pow(sum,2);
sum+=pow((1-_indi[0]),2);
return (-sum);
}
int main (int __argc, char *__argv[])
{
peo :: init( __argc, __argv );
eoParser parser(__argc, __argv);
unsigned int POP_SIZE = parser.createParam((unsigned int)(20), "popSize", "Population size",'P',"Param").value();
unsigned int MAX_GEN = parser.createParam((unsigned int)(100), "maxGen", "Maximum number of generations",'G',"Param").value();
double EPSILON = parser.createParam(0.01, "mutEpsilon", "epsilon for mutation",'e',"Param").value();
double CROSS_RATE = parser.createParam(0.25, "pCross", "Crossover probability",'C',"Param").value();
double MUT_RATE = parser.createParam(0.35, "pMut", "Mutation probability",'M',"Param").value();
unsigned int VEC_SIZE = parser.createParam((unsigned int)(2), "vecSize", "Vector size",'V',"Param").value();
double INIT_POSITION_MIN = parser.createParam(-2.0, "pMin", "Init position min",'N',"Param").value();
double INIT_POSITION_MAX = parser.createParam(2.0, "pMax", "Init position max",'X',"Param").value();
rng.reseed (time(0));
eoGenContinue < Indi > genContPara (MAX_GEN);
eoCombinedContinue <Indi> continuatorPara (genContPara);
eoCheckPoint<Indi> checkpoint(continuatorPara);
peoEvalFunc<Indi> plainEval(f);
peoPopEval <Indi> eval(plainEval);
eoUniformGenerator < double >uGen (INIT_POSITION_MIN, INIT_POSITION_MAX);
eoInitFixedLength < Indi > random (VEC_SIZE, uGen);
eoRankingSelect<Indi> selectionStrategy;
eoSelectNumber<Indi> select(selectionStrategy,POP_SIZE);
eoSegmentCrossover<Indi> crossover;
eoUniformMutation<Indi> mutation(EPSILON);
// Parallel transformation
peoTransform<Indi> transform(crossover,CROSS_RATE,mutation,MUT_RATE);
eoPlusReplacement<Indi> replace;
eoPop < Indi > pop;
pop.append (POP_SIZE, random);
eoEasyEA< Indi > eaAlg( checkpoint, eval, select, transform, replace );
peoWrapper parallelEA( eaAlg, pop);
eval.setOwner(parallelEA);
// setOwner
transform.setOwner (parallelEA);
peo :: run();
peo :: finalize();
if (getNodeRank()==1)
{
pop.sort();
std::cout << "Final population :\n" << pop << std::endl;
}
}

242
tags/paradiseo1.2-patch1/paradiseo-peo/tutorial/Lesson2/paradiseo-peo-lsn.doxyfile
View file

@ -1,242 +0,0 @@
# Doxyfile 1.4.7
#---------------------------------------------------------------------------
# Project related configuration options
#---------------------------------------------------------------------------
PROJECT_NAME = "ParadisEO-PEO Lesson2"
PROJECT_NUMBER = 0.1
OUTPUT_DIRECTORY = ../../../doc/html/lesson2
CREATE_SUBDIRS = NO
OUTPUT_LANGUAGE = English
USE_WINDOWS_ENCODING = NO
BRIEF_MEMBER_DESC = YES
REPEAT_BRIEF = YES
ABBREVIATE_BRIEF = "The $name class" \
"The $name widget" \
"The $name file" \
is \
provides \
specifies \
contains \
represents \
a \
an \
the
ALWAYS_DETAILED_SEC = NO
INLINE_INHERITED_MEMB = NO
FULL_PATH_NAMES = NO
STRIP_FROM_PATH =
STRIP_FROM_INC_PATH =
SHORT_NAMES = NO
JAVADOC_AUTOBRIEF = YES
MULTILINE_CPP_IS_BRIEF = NO
DETAILS_AT_TOP = NO
INHERIT_DOCS = YES
SEPARATE_MEMBER_PAGES = NO
TAB_SIZE = 8
ALIASES =
OPTIMIZE_OUTPUT_FOR_C = NO
OPTIMIZE_OUTPUT_JAVA = NO
BUILTIN_STL_SUPPORT = NO
DISTRIBUTE_GROUP_DOC = NO
SUBGROUPING = YES
#---------------------------------------------------------------------------
# Build related configuration options
#---------------------------------------------------------------------------
EXTRACT_ALL = NO
EXTRACT_PRIVATE = YES
EXTRACT_STATIC = YES
EXTRACT_LOCAL_CLASSES = YES
EXTRACT_LOCAL_METHODS = NO
HIDE_UNDOC_MEMBERS = YES
HIDE_UNDOC_CLASSES = YES
HIDE_FRIEND_COMPOUNDS = NO
HIDE_IN_BODY_DOCS = NO
INTERNAL_DOCS = NO
CASE_SENSE_NAMES = YES
HIDE_SCOPE_NAMES = NO
SHOW_INCLUDE_FILES = YES
INLINE_INFO = YES
SORT_MEMBER_DOCS = NO
SORT_BRIEF_DOCS = NO
SORT_BY_SCOPE_NAME = NO
GENERATE_TODOLIST = YES
GENERATE_TESTLIST = YES
GENERATE_BUGLIST = YES
GENERATE_DEPRECATEDLIST= YES
ENABLED_SECTIONS =
MAX_INITIALIZER_LINES = 30
SHOW_USED_FILES = YES
SHOW_DIRECTORIES = NO
FILE_VERSION_FILTER =
#---------------------------------------------------------------------------
# configuration options related to warning and progress messages
#---------------------------------------------------------------------------
QUIET = YES
WARNINGS = YES
WARN_IF_UNDOCUMENTED = YES
WARN_IF_DOC_ERROR = YES
WARN_NO_PARAMDOC = NO
WARN_FORMAT = "$file:$line: $text"
WARN_LOGFILE =
#---------------------------------------------------------------------------
# configuration options related to the input files
#---------------------------------------------------------------------------
INPUT = .
FILE_PATTERNS = *.cpp \
*.h \
NEWS \
README
RECURSIVE = YES
EXCLUDE =
EXCLUDE_SYMLINKS = NO
EXCLUDE_PATTERNS =
EXAMPLE_PATH =
EXAMPLE_PATTERNS = *
EXAMPLE_RECURSIVE = NO
IMAGE_PATH = ../../docs/images
INPUT_FILTER =
FILTER_PATTERNS =
FILTER_SOURCE_FILES = NO
#---------------------------------------------------------------------------
# configuration options related to source browsing
#---------------------------------------------------------------------------
SOURCE_BROWSER = YES
INLINE_SOURCES = NO
STRIP_CODE_COMMENTS = YES
REFERENCED_BY_RELATION = YES
REFERENCES_RELATION = YES
REFERENCES_LINK_SOURCE = YES
USE_HTAGS = NO
VERBATIM_HEADERS = YES
#---------------------------------------------------------------------------
# configuration options related to the alphabetical class index
#---------------------------------------------------------------------------
ALPHABETICAL_INDEX = YES
COLS_IN_ALPHA_INDEX = 3
IGNORE_PREFIX = peo
#---------------------------------------------------------------------------
# configuration options related to the HTML output
#---------------------------------------------------------------------------
GENERATE_HTML = YES
HTML_OUTPUT = html
HTML_FILE_EXTENSION = .html
HTML_HEADER =
HTML_FOOTER =
HTML_STYLESHEET =
HTML_ALIGN_MEMBERS = YES
GENERATE_HTMLHELP = NO
CHM_FILE =
HHC_LOCATION =
GENERATE_CHI = NO
BINARY_TOC = NO
TOC_EXPAND = NO
DISABLE_INDEX = NO
ENUM_VALUES_PER_LINE = 4
GENERATE_TREEVIEW = YES
TREEVIEW_WIDTH = 250
#---------------------------------------------------------------------------
# configuration options related to the LaTeX output
#---------------------------------------------------------------------------
GENERATE_LATEX = YES
LATEX_OUTPUT = latex
LATEX_CMD_NAME = latex
MAKEINDEX_CMD_NAME = makeindex
COMPACT_LATEX = NO
PAPER_TYPE = a4wide
EXTRA_PACKAGES =
LATEX_HEADER =
PDF_HYPERLINKS = YES
USE_PDFLATEX = YES
LATEX_BATCHMODE = NO
LATEX_HIDE_INDICES = NO
#---------------------------------------------------------------------------
# configuration options related to the RTF output
#---------------------------------------------------------------------------
GENERATE_RTF = NO
RTF_OUTPUT = rtf
COMPACT_RTF = NO
RTF_HYPERLINKS = NO
RTF_STYLESHEET_FILE =
RTF_EXTENSIONS_FILE =
#---------------------------------------------------------------------------
# configuration options related to the man page output
#---------------------------------------------------------------------------
GENERATE_MAN = YES
MAN_OUTPUT = man
MAN_EXTENSION = .3
MAN_LINKS = NO
#---------------------------------------------------------------------------
# configuration options related to the XML output
#---------------------------------------------------------------------------
GENERATE_XML = NO
XML_OUTPUT = xml
XML_SCHEMA =
XML_DTD =
XML_PROGRAMLISTING = YES
#---------------------------------------------------------------------------
# configuration options for the AutoGen Definitions output
#---------------------------------------------------------------------------
GENERATE_AUTOGEN_DEF = NO
#---------------------------------------------------------------------------
# configuration options related to the Perl module output
#---------------------------------------------------------------------------
GENERATE_PERLMOD = NO
PERLMOD_LATEX = NO
PERLMOD_PRETTY = YES
PERLMOD_MAKEVAR_PREFIX =
#---------------------------------------------------------------------------
# Configuration options related to the preprocessor
#---------------------------------------------------------------------------
ENABLE_PREPROCESSING = YES
MACRO_EXPANSION = NO
EXPAND_ONLY_PREDEF = NO
SEARCH_INCLUDES = YES
INCLUDE_PATH =
INCLUDE_FILE_PATTERNS =
PREDEFINED =
EXPAND_AS_DEFINED =
SKIP_FUNCTION_MACROS = YES
#---------------------------------------------------------------------------
# Configuration::additions related to external references
#---------------------------------------------------------------------------
TAGFILES = ../../../paradiseo-mo/docs/eo.doxytag=../../../../../paradiseo-mo/docs/html \
../../../paradiseo-mo/docs/mo.doxytag=../../../../../paradiseo-mo/docs/html \
../../docs/paradiseo-peo.doxytag=../../ \
../shared/paradiseo-peo-lsn-shared.doxytag=../../lsnshared/html
GENERATE_TAGFILE = ../../docs/paradiseo-peo-lsn.doxytag
ALLEXTERNALS = NO
EXTERNAL_GROUPS = YES
PERL_PATH = /usr/bin/perl
#---------------------------------------------------------------------------
# Configuration options related to the dot tool
#---------------------------------------------------------------------------
CLASS_DIAGRAMS = YES
HIDE_UNDOC_RELATIONS = YES
HAVE_DOT = NO
CLASS_GRAPH = YES
COLLABORATION_GRAPH = YES
GROUP_GRAPHS = YES
UML_LOOK = NO
TEMPLATE_RELATIONS = NO
INCLUDE_GRAPH = YES
INCLUDED_BY_GRAPH = YES
CALL_GRAPH = NO
CALLER_GRAPH = NO
GRAPHICAL_HIERARCHY = YES
DIRECTORY_GRAPH = YES
DOT_IMAGE_FORMAT = png
DOT_PATH =
DOTFILE_DIRS =
MAX_DOT_GRAPH_WIDTH = 1024
MAX_DOT_GRAPH_HEIGHT = 1024
MAX_DOT_GRAPH_DEPTH = 0
DOT_TRANSPARENT = NO
DOT_MULTI_TARGETS = NO
GENERATE_LEGEND = YES
DOT_CLEANUP = YES
#---------------------------------------------------------------------------
# Configuration::additions related to the search engine
#---------------------------------------------------------------------------
SEARCHENGINE = YES

19
tags/paradiseo1.2-patch1/paradiseo-peo/tutorial/Lesson2/param
View file

@ -1,19 +0,0 @@
###### Param ######
--popSize=20 # -P : Population size
--maxGen=300 # -G : Maximum number of generations
--mutEpsilon=0.01 # -e : epsilon for mutation
--pCross=0.80 # -C : Crossover probability
--pMut=0.30 # -M : Mutation probability
--vecSize=2 # -V : Vector size
--pMin=-2.0 # -N : Init position min
--pMax=2.0 # -X : Init position max
## miscallenous parameters
--debug=false
## deployment schema
--schema=schema.xml

19
tags/paradiseo1.2-patch1/paradiseo-peo/tutorial/Lesson2/schema.xml
View file

@ -1,19 +0,0 @@
<?xml version="1.0"?>
<schema>
<group scheduler="0">
<node name="0" num_workers="0">
</node>
<node name="1" num_workers="0">
<runner>1</runner>
</node>
<node name="2" num_workers="1">
</node>
<node name="3" num_workers="1">
</node>
</group>
</schema>

84
tags/paradiseo1.2-patch1/paradiseo-peo/tutorial/Lesson3/CMakeLists.txt
View file

@ -1,84 +0,0 @@
######################################################################################
### 0) Set the compiler and define targets to easily run the lessons
######################################################################################
SET (CMAKE_CXX_COMPILER mpicxx)
#ADD_CUSTOM_TARGET(install DEPENDS ${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson3/param ${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson3/schema.xml)
#ADD_CUSTOM_COMMAND(
# TARGET install
# POST_BUILD
# COMMAND ${CMAKE_COMMAND}
# ARGS -E copy_if_different
# ${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson3/param
# ${ParadisEO-PEO_BINARY_DIR}/tutorial/Lesson3)
#ADD_CUSTOM_COMMAND(
# TARGET install
# POST_BUILD
# COMMAND ${CMAKE_COMMAND}
# ARGS -E copy_if_different
# ${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson3/schema.xml
# ${ParadisEO-PEO_BINARY_DIR}/tutorial/Lesson3)
EXECUTE_PROCESS(
COMMAND ${CMAKE_COMMAND} -E copy_if_different
${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson3/param
${ParadisEO-PEO_BINARY_DIR}/tutorial/Lesson3
COMMAND ${CMAKE_COMMAND} -E copy_if_different
${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson3/schema.xml
${ParadisEO-PEO_BINARY_DIR}/tutorial/Lesson3
)
######################################################################################
######################################################################################
### 1) Include the sources
######################################################################################
INCLUDE_DIRECTORIES(${EO_SRC_DIR}/src ${MOEO_SRC_DIR}/src ${MO_SRC_DIR}/src ${ParadisEO-PEO_SOURCE_DIR}/src)
######################################################################################
######################################################################################
### 2) Specify where CMake can find the libraries
######################################################################################
LINK_DIRECTORIES(${EO_BIN_DIR}/lib ${ParadisEO-PEO_BINARY_DIR}/lib)
######################################################################################
######################################################################################
### 3) Define your target(s): just an executable here
######################################################################################
ADD_EXECUTABLE(pso3 mainPSO.cpp)
ADD_DEPENDENCIES(pso3 peo rmc_mpi)
ADD_EXECUTABLE(ea3 mainEA.cpp)
ADD_DEPENDENCIES(ea3 peo rmc_mpi)
######################################################################################
######################################################################################
### 4) Optionnal: define properties
######################################################################################
SET(LESSON3_VERSION ${GLOBAL_VERSION})
SET_TARGET_PROPERTIES(pso3 PROPERTIES VERSION "${LESSON3_VERSION}")
SET_TARGET_PROPERTIES(ea3 PROPERTIES VERSION "${LESSON3_VERSION}")
######################################################################################
######################################################################################
### 5) Link the librairies
######################################################################################
TARGET_LINK_LIBRARIES(pso3 ${XML2_LIBS} peo rmc_mpi eo eoutils peo)
TARGET_LINK_LIBRARIES(ea3 ${XML2_LIBS} peo rmc_mpi eo eoutils peo)
######################################################################################

150
tags/paradiseo1.2-patch1/paradiseo-peo/tutorial/Lesson3/mainEA.cpp
View file

@ -1,150 +0,0 @@
/*
* <mainEA.cpp>
* Copyright (C) DOLPHIN Project-Team, INRIA Futurs, 2006-2008
* (C) OPAC Team, INRIA, 2008
*
* Clive Canape
*
* This software is governed by the CeCILL license under French law and
* abiding by the rules of distribution of free software. You can use,
* modify and/ or redistribute the software under the terms of the CeCILL
* license as circulated by CEA, CNRS and INRIA at the following URL
* "http://www.cecill.info".
*
* As a counterpart to the access to the source code and rights to copy,
* modify and redistribute granted by the license, users are provided only
* with a limited warranty and the software's author, the holder of the
* economic rights, and the successive licensors have only limited liability.
*
* In this respect, the user's attention is drawn to the risks associated
* with loading, using, modifying and/syncor developing or reproducing the
* software by the user in light of its specific status of free software,
* that may mean that it is complicated to manipulate, and that also
* therefore means that it is reserved for developers and experienced
* professionals having in-depth computer knowledge. Users are therefore
* encouraged to load and test the software's suitability as regards their
* requirements in conditions enabling the security of their systems and/or
* data to be ensured and, more generally, to use and operate it in the
* same conditions as regards security.
* The fact that you are presently reading this means that you have had
* knowledge of the CeCILL license and that you accept its terms.
*
* ParadisEO WebSite : http://paradiseo.gforge.inria.fr
* Contact: paradiseo-help@lists.gforge.inria.fr
*
*/
#include <peo>
#include <es.h>
typedef eoReal<double> Indi;
double f (const Indi & _indi)
{
double sum;
sum=_indi[1]-pow(_indi[0],2);
sum=100*pow(sum,2);
sum+=pow((1-_indi[0]),2);
return (-sum);
}
int main (int __argc, char *__argv[])
{
peo :: init( __argc, __argv );
eoParser parser(__argc, __argv);
unsigned int POP_SIZE = parser.createParam((unsigned int)(20), "popSize", "Population size",'P',"Param").value();
unsigned int MAX_GEN = parser.createParam((unsigned int)(100), "maxGen", "Maximum number of generations",'G',"Param").value();
double EPSILON = parser.createParam(0.01, "mutEpsilon", "epsilon for mutation",'e',"Param").value();
double CROSS_RATE = parser.createParam(0.25, "pCross", "Crossover probability",'C',"Param").value();
double MUT_RATE = parser.createParam(0.35, "pMut", "Mutation probability",'M',"Param").value();
unsigned int VEC_SIZE = parser.createParam((unsigned int)(2), "vecSize", "Vector size",'V',"Param").value();
double INIT_POSITION_MIN = parser.createParam(-2.0, "pMin", "Init position min",'N',"Param").value();
double INIT_POSITION_MAX = parser.createParam(2.0, "pMax", "Init position max",'X',"Param").value();
unsigned int MIG_FREQ = parser.createParam((unsigned int)(10), "migFreq", "Migration frequency",'F',"Param").value();
unsigned int MIG_SIZE = parser.createParam((unsigned int)(5), "migSize", "Migration size",'S',"Param").value();
rng.reseed (time(0));
// Define the topology of your island model
RingTopology topology;
// First algorithm
/*****************************************************************************************/
eoGenContinue < Indi > genContPara (MAX_GEN);
eoCombinedContinue <Indi> continuatorPara (genContPara);
eoCheckPoint<Indi> checkpoint(continuatorPara);
peoEvalFunc<Indi> mainEval( f );
peoPopEval <Indi> eval(mainEval);
eoUniformGenerator < double >uGen (INIT_POSITION_MIN, INIT_POSITION_MAX);
eoInitFixedLength < Indi > random (VEC_SIZE, uGen);
eoRankingSelect<Indi> selectionStrategy;
eoSelectNumber<Indi> select(selectionStrategy,POP_SIZE);
eoSegmentCrossover<Indi> crossover;
eoUniformMutation<Indi> mutation(EPSILON);
peoTransform<Indi> transform(crossover,CROSS_RATE,mutation,MUT_RATE);
eoPop < Indi > pop;
pop.append (POP_SIZE, random);
// Define a synchronous island
// Seclection
eoRandomSelect<Indi> mig_select_one;
eoSelector <Indi, eoPop<Indi> > mig_select (mig_select_one,MIG_SIZE,pop);
// Replacement
eoPlusReplacement<Indi> replace;
eoReplace <Indi, eoPop<Indi> > mig_replace (replace,pop);
// Island
peoSyncIslandMig<eoPop<Indi>, eoPop<Indi> > mig(MIG_FREQ,mig_select,mig_replace,topology);
checkpoint.add(mig);
eoEasyEA< Indi > eaAlg( checkpoint, eval, select, transform, replace );
peoWrapper parallelEA( eaAlg, pop);
eval.setOwner(parallelEA);
transform.setOwner(parallelEA);
// setOwner
mig.setOwner(parallelEA);
/*****************************************************************************************/
// Second algorithm (on the same model but with others names)
/*****************************************************************************************/
eoGenContinue < Indi > genContPara2 (MAX_GEN);
eoCombinedContinue <Indi> continuatorPara2 (genContPara2);
eoCheckPoint<Indi> checkpoint2(continuatorPara2);
peoEvalFunc<Indi> mainEval2( f );
peoPopEval <Indi> eval2(mainEval2);
eoUniformGenerator < double >uGen2 (INIT_POSITION_MIN, INIT_POSITION_MAX);
eoInitFixedLength < Indi > random2 (VEC_SIZE, uGen2);
eoRankingSelect<Indi> selectionStrategy2;
eoSelectNumber<Indi> select2(selectionStrategy2,POP_SIZE);
eoSegmentCrossover<Indi> crossover2;
eoUniformMutation<Indi> mutation2(EPSILON);
peoTransform<Indi> transform2(crossover2,CROSS_RATE,mutation2,MUT_RATE);
eoPop < Indi > pop2;
pop2.append (POP_SIZE, random2);
eoPlusReplacement<Indi> replace2;
eoRandomSelect<Indi> mig_select_one2;
eoSelector <Indi, eoPop<Indi> > mig_select2 (mig_select_one2,MIG_SIZE,pop2);
eoReplace <Indi, eoPop<Indi> > mig_replace2 (replace2,pop2);
peoSyncIslandMig<eoPop<Indi>, eoPop<Indi> > mig2(MIG_FREQ,mig_select2,mig_replace2,topology);
checkpoint2.add(mig2);
eoEasyEA< Indi > eaAlg2( checkpoint2, eval2, select2, transform2, replace2 );
peoWrapper parallelEA2( eaAlg2, pop2);
eval2.setOwner(parallelEA2);
transform2.setOwner(parallelEA2);
mig2.setOwner(parallelEA2);
/*****************************************************************************************/
peo :: run();
peo :: finalize();
if (getNodeRank()==1)
{
pop.sort();
pop2.sort();
std::cout << "Final population 1 :\n" << pop << std::endl;
std::cout << "Final population 2 :\n" << pop2 << std::endl;
}
}

166
tags/paradiseo1.2-patch1/paradiseo-peo/tutorial/Lesson3/mainPSO.cpp
View file

@ -1,166 +0,0 @@
/*
* <mainPSO.cpp>
* Copyright (C) DOLPHIN Project-Team, INRIA Futurs, 2006-2008
* (C) OPAC Team, INRIA, 2008
*
* Clive Canape
*
* This software is governed by the CeCILL license under French law and
* abiding by the rules of distribution of free software. You can use,
* modify and/ or redistribute the software under the terms of the CeCILL
* license as circulated by CEA, CNRS and INRIA at the following URL
* "http://www.cecill.info".
*
* As a counterpart to the access to the source code and rights to copy,
* modify and redistribute granted by the license, users are provided only
* with a limited warranty and the software's author, the holder of the
* economic rights, and the successive licensors have only limited liability.
*
* In this respect, the user's attention is drawn to the risks associated
* with loading, using, modifying and/or developing or reproducing the
* software by the user in light of its specific status of free software,
* that may mean that it is complicated to manipulate, and that also
* therefore means that it is reserved for developers and experienced
* professionals having in-depth computer knowledge. Users are therefore
* encouraged to load and test the software's suitability as regards their
* requirements in conditions enabling the security of their systems and/or
* data to be ensured and, more generally, to use and operate it in the
* same conditions as regards security.
* The fact that you are presently reading this means that you have had
* knowledge of the CeCILL license and that you accept its terms.
*
* ParadisEO WebSite : http://paradiseo.gforge.inria.fr
* Contact: paradiseo-help@lists.gforge.inria.fr
*
*/
#include <peo>
typedef eoRealParticle < double >Indi;
double f (const Indi & _indi)
{
double sum;
sum=_indi[1]-pow(_indi[0],2);
sum=100*pow(sum,2);
sum+=pow((1-_indi[0]),2);
return (-sum);
}
int main (int __argc, char *__argv[])
{
peo :: init( __argc, __argv );
eoParser parser(__argc, __argv);
unsigned int POP_SIZE = parser.createParam((unsigned int)(20), "popSize", "Population size",'P',"Param").value();
unsigned int MAX_GEN = parser.createParam((unsigned int)(100), "maxGen", "Maximum number of generations",'G',"Param").value();
unsigned int VEC_SIZE = parser.createParam((unsigned int)(2), "vecSize", "Vector size",'V',"Param").value();
double INIT_POSITION_MIN = parser.createParam(-2.0, "pMin", "Init position min",'N',"Param").value();
double INIT_POSITION_MAX = parser.createParam(2.0, "pMax", "Init position max",'X',"Param").value();
double INIT_VELOCITY_MIN = parser.createParam(-1.0, "vMin", "Init velocity min",'n',"Param").value();
double INIT_VELOCITY_MAX = parser.createParam(1.0, "vMax", "Init velocity max",'x',"Param").value();
double omega = parser.createParam(1.0, "weight", "Weight",'w',"Param").value();
double C1 = parser.createParam(0.5, "c1", "C1",'1',"Param").value();
double C2 = parser.createParam(2.0, "c2t", "C2",'2',"Param").value();
unsigned int NEIGHBORHOOD_SIZE = parser.createParam((unsigned int)(6), "neighSize", "Neighborhood size",'H',"Param").value();
unsigned int MIG_FREQ = parser.createParam((unsigned int)(10), "migFreq", "Migration frequency",'F',"Param").value();
rng.reseed (time(0));
// Island model
RingTopology topologyMig;
// First
eoGenContinue < Indi > genContPara (MAX_GEN);
eoCombinedContinue <Indi> continuatorPara (genContPara);
eoCheckPoint<Indi> checkpoint(continuatorPara);
peoEvalFunc<Indi, double, const Indi& > plainEval(f);
peoPopEval< Indi > eval(plainEval);
eoUniformGenerator < double >uGen (INIT_POSITION_MIN, INIT_POSITION_MAX);
eoInitFixedLength < Indi > random (VEC_SIZE, uGen);
eoUniformGenerator < double >sGen (INIT_VELOCITY_MIN, INIT_VELOCITY_MAX);
eoVelocityInitFixedLength < Indi > veloRandom (VEC_SIZE, sGen);
eoFirstIsBestInit < Indi > localInit;
eoRealVectorBounds bndsFlight(VEC_SIZE,INIT_POSITION_MIN,INIT_POSITION_MAX);
eoStandardFlight < Indi > flight(bndsFlight);
eoPop < Indi > pop;
pop.append (POP_SIZE, random);
eoLinearTopology<Indi> topology(NEIGHBORHOOD_SIZE);
eoRealVectorBounds bnds(VEC_SIZE,INIT_VELOCITY_MIN,INIT_VELOCITY_MAX);
eoStandardVelocity < Indi > velocity (topology,omega,C1,C2,bnds);
eoInitializer <Indi> init(eval,veloRandom,localInit,topology,pop);
// Island model
eoPeriodicContinue< Indi > mig_cont( MIG_FREQ );
peoPSOSelect<Indi> mig_selec(topology);
peoWorstPositionReplacement<Indi> mig_replac;
// Specific implementation (peoData.h)
eoContinuator<Indi> cont(mig_cont, pop);
eoSelector <Indi, eoPop<Indi> > mig_select (mig_selec,1,pop);
eoReplace <Indi, eoPop<Indi> > mig_replace (mig_replac,pop);
// Second
eoGenContinue < Indi > genContPara2 (MAX_GEN);
eoCombinedContinue <Indi> continuatorPara2 (genContPara2);
eoCheckPoint<Indi> checkpoint2(continuatorPara2);
peoEvalFunc<Indi, double, const Indi& > plainEval2(f);
peoPopEval< Indi > eval2(plainEval2);
eoUniformGenerator < double >uGen2 (INIT_POSITION_MIN, INIT_POSITION_MAX);
eoInitFixedLength < Indi > random2 (VEC_SIZE, uGen2);
eoUniformGenerator < double >sGen2 (INIT_VELOCITY_MIN, INIT_VELOCITY_MAX);
eoVelocityInitFixedLength < Indi > veloRandom2 (VEC_SIZE, sGen2);
eoFirstIsBestInit < Indi > localInit2;
eoRealVectorBounds bndsFlight2(VEC_SIZE,INIT_POSITION_MIN,INIT_POSITION_MAX);
eoStandardFlight < Indi > flight2(bndsFlight2);
eoPop < Indi > pop2;
pop2.append (POP_SIZE, random2);
eoLinearTopology<Indi> topology2(NEIGHBORHOOD_SIZE);
eoRealVectorBounds bnds2(VEC_SIZE,INIT_VELOCITY_MIN,INIT_VELOCITY_MAX);
eoStandardVelocity < Indi > velocity2 (topology2,omega,C1,C2,bnds2);
eoInitializer <Indi> init2(eval2,veloRandom2,localInit2,topology2,pop2);
// Island model
eoPeriodicContinue< Indi > mig_cont2( MIG_FREQ );
peoPSOSelect<Indi> mig_selec2(topology2);
peoWorstPositionReplacement<Indi> mig_replac2;
// Specific implementation (peoData.h)
eoContinuator<Indi> cont2(mig_cont2,pop2);
eoSelector <Indi, eoPop<Indi> > mig_select2 (mig_selec2,1,pop2);
eoReplace <Indi, eoPop<Indi> > mig_replace2 (mig_replac2,pop2);
// Asynchronous island
peoAsyncIslandMig< eoPop<Indi>, eoPop<Indi> > mig(cont,mig_select, mig_replace, topologyMig);
checkpoint.add( mig );
peoAsyncIslandMig< eoPop<Indi>, eoPop<Indi> > mig2(cont2,mig_select2, mig_replace2, topologyMig);
checkpoint2.add( mig2 );
// Parallel algorithm
eoSyncEasyPSO <Indi> psa(init,checkpoint,eval, velocity, flight);
peoWrapper parallelPSO( psa, pop);
eval.setOwner(parallelPSO);
mig.setOwner(parallelPSO);
eoSyncEasyPSO <Indi> psa2(init2,checkpoint2,eval2, velocity2, flight2);
peoWrapper parallelPSO2( psa2, pop2);
eval2.setOwner(parallelPSO2);
mig2.setOwner(parallelPSO2);
peo :: run();
peo :: finalize();
if (getNodeRank()==1)
{
pop.sort();
pop2.sort();
std::cout << "Final population :\n" << pop << std::endl;
std::cout << "Final population :\n" << pop2 << std::endl;
}
}

242
tags/paradiseo1.2-patch1/paradiseo-peo/tutorial/Lesson3/paradiseo-peo-lsn.doxyfile
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@ -1,242 +0,0 @@
# Doxyfile 1.4.7
#---------------------------------------------------------------------------
# Project related configuration options
#---------------------------------------------------------------------------
PROJECT_NAME = "ParadisEO-PEO Lesson3"
PROJECT_NUMBER = 0.1
OUTPUT_DIRECTORY = ../../../doc/html/lesson3
CREATE_SUBDIRS = NO
OUTPUT_LANGUAGE = English
USE_WINDOWS_ENCODING = NO
BRIEF_MEMBER_DESC = YES
REPEAT_BRIEF = YES
ABBREVIATE_BRIEF = "The $name class" \
"The $name widget" \
"The $name file" \
is \
provides \
specifies \
contains \
represents \
a \
an \
the
ALWAYS_DETAILED_SEC = NO
INLINE_INHERITED_MEMB = NO
FULL_PATH_NAMES = NO
STRIP_FROM_PATH =
STRIP_FROM_INC_PATH =
SHORT_NAMES = NO
JAVADOC_AUTOBRIEF = YES
MULTILINE_CPP_IS_BRIEF = NO
DETAILS_AT_TOP = NO
INHERIT_DOCS = YES
SEPARATE_MEMBER_PAGES = NO
TAB_SIZE = 8
ALIASES =
OPTIMIZE_OUTPUT_FOR_C = NO
OPTIMIZE_OUTPUT_JAVA = NO
BUILTIN_STL_SUPPORT = NO
DISTRIBUTE_GROUP_DOC = NO
SUBGROUPING = YES
#---------------------------------------------------------------------------
# Build related configuration options
#---------------------------------------------------------------------------
EXTRACT_ALL = NO
EXTRACT_PRIVATE = YES
EXTRACT_STATIC = YES
EXTRACT_LOCAL_CLASSES = YES
EXTRACT_LOCAL_METHODS = NO
HIDE_UNDOC_MEMBERS = YES
HIDE_UNDOC_CLASSES = YES
HIDE_FRIEND_COMPOUNDS = NO
HIDE_IN_BODY_DOCS = NO
INTERNAL_DOCS = NO
CASE_SENSE_NAMES = YES
HIDE_SCOPE_NAMES = NO
SHOW_INCLUDE_FILES = YES
INLINE_INFO = YES
SORT_MEMBER_DOCS = NO
SORT_BRIEF_DOCS = NO
SORT_BY_SCOPE_NAME = NO
GENERATE_TODOLIST = YES
GENERATE_TESTLIST = YES
GENERATE_BUGLIST = YES
GENERATE_DEPRECATEDLIST= YES
ENABLED_SECTIONS =
MAX_INITIALIZER_LINES = 30
SHOW_USED_FILES = YES
SHOW_DIRECTORIES = NO
FILE_VERSION_FILTER =
#---------------------------------------------------------------------------
# configuration options related to warning and progress messages
#---------------------------------------------------------------------------
QUIET = YES
WARNINGS = YES
WARN_IF_UNDOCUMENTED = YES
WARN_IF_DOC_ERROR = YES
WARN_NO_PARAMDOC = NO
WARN_FORMAT = "$file:$line: $text"
WARN_LOGFILE =
#---------------------------------------------------------------------------
# configuration options related to the input files
#---------------------------------------------------------------------------
INPUT = .
FILE_PATTERNS = *.cpp \
*.h \
NEWS \
README
RECURSIVE = YES
EXCLUDE =
EXCLUDE_SYMLINKS = NO
EXCLUDE_PATTERNS =
EXAMPLE_PATH =
EXAMPLE_PATTERNS = *
EXAMPLE_RECURSIVE = NO
IMAGE_PATH = ../../docs/images
INPUT_FILTER =
FILTER_PATTERNS =
FILTER_SOURCE_FILES = NO
#---------------------------------------------------------------------------
# configuration options related to source browsing
#---------------------------------------------------------------------------
SOURCE_BROWSER = YES
INLINE_SOURCES = NO
STRIP_CODE_COMMENTS = YES
REFERENCED_BY_RELATION = YES
REFERENCES_RELATION = YES
REFERENCES_LINK_SOURCE = YES
USE_HTAGS = NO
VERBATIM_HEADERS = YES
#---------------------------------------------------------------------------
# configuration options related to the alphabetical class index
#---------------------------------------------------------------------------
ALPHABETICAL_INDEX = YES
COLS_IN_ALPHA_INDEX = 3
IGNORE_PREFIX = peo
#---------------------------------------------------------------------------
# configuration options related to the HTML output
#---------------------------------------------------------------------------
GENERATE_HTML = YES
HTML_OUTPUT = html
HTML_FILE_EXTENSION = .html
HTML_HEADER =
HTML_FOOTER =
HTML_STYLESHEET =
HTML_ALIGN_MEMBERS = YES
GENERATE_HTMLHELP = NO
CHM_FILE =
HHC_LOCATION =
GENERATE_CHI = NO
BINARY_TOC = NO
TOC_EXPAND = NO
DISABLE_INDEX = NO
ENUM_VALUES_PER_LINE = 4
GENERATE_TREEVIEW = YES
TREEVIEW_WIDTH = 250
#---------------------------------------------------------------------------
# configuration options related to the LaTeX output
#---------------------------------------------------------------------------
GENERATE_LATEX = YES
LATEX_OUTPUT = latex
LATEX_CMD_NAME = latex
MAKEINDEX_CMD_NAME = makeindex
COMPACT_LATEX = NO
PAPER_TYPE = a4wide
EXTRA_PACKAGES =
LATEX_HEADER =
PDF_HYPERLINKS = YES
USE_PDFLATEX = YES
LATEX_BATCHMODE = NO
LATEX_HIDE_INDICES = NO
#---------------------------------------------------------------------------
# configuration options related to the RTF output
#---------------------------------------------------------------------------
GENERATE_RTF = NO
RTF_OUTPUT = rtf
COMPACT_RTF = NO
RTF_HYPERLINKS = NO
RTF_STYLESHEET_FILE =
RTF_EXTENSIONS_FILE =
#---------------------------------------------------------------------------
# configuration options related to the man page output
#---------------------------------------------------------------------------
GENERATE_MAN = YES
MAN_OUTPUT = man
MAN_EXTENSION = .3
MAN_LINKS = NO
#---------------------------------------------------------------------------
# configuration options related to the XML output
#---------------------------------------------------------------------------
GENERATE_XML = NO
XML_OUTPUT = xml
XML_SCHEMA =
XML_DTD =
XML_PROGRAMLISTING = YES
#---------------------------------------------------------------------------
# configuration options for the AutoGen Definitions output
#---------------------------------------------------------------------------
GENERATE_AUTOGEN_DEF = NO
#---------------------------------------------------------------------------
# configuration options related to the Perl module output
#---------------------------------------------------------------------------
GENERATE_PERLMOD = NO
PERLMOD_LATEX = NO
PERLMOD_PRETTY = YES
PERLMOD_MAKEVAR_PREFIX =
#---------------------------------------------------------------------------
# Configuration options related to the preprocessor
#---------------------------------------------------------------------------
ENABLE_PREPROCESSING = YES
MACRO_EXPANSION = NO
EXPAND_ONLY_PREDEF = NO
SEARCH_INCLUDES = YES
INCLUDE_PATH =
INCLUDE_FILE_PATTERNS =
PREDEFINED =
EXPAND_AS_DEFINED =
SKIP_FUNCTION_MACROS = YES
#---------------------------------------------------------------------------
# Configuration::additions related to external references
#---------------------------------------------------------------------------
TAGFILES = ../../../paradiseo-mo/docs/eo.doxytag=../../../../../paradiseo-mo/docs/html \
../../../paradiseo-mo/docs/mo.doxytag=../../../../../paradiseo-mo/docs/html \
../../docs/paradiseo-peo.doxytag=../../ \
../shared/paradiseo-peo-lsn-shared.doxytag=../../lsnshared/html
GENERATE_TAGFILE = ../../docs/paradiseo-peo-lsn.doxytag
ALLEXTERNALS = NO
EXTERNAL_GROUPS = YES
PERL_PATH = /usr/bin/perl
#---------------------------------------------------------------------------
# Configuration options related to the dot tool
#---------------------------------------------------------------------------
CLASS_DIAGRAMS = YES
HIDE_UNDOC_RELATIONS = YES
HAVE_DOT = NO
CLASS_GRAPH = YES
COLLABORATION_GRAPH = YES
GROUP_GRAPHS = YES
UML_LOOK = NO
TEMPLATE_RELATIONS = NO
INCLUDE_GRAPH = YES
INCLUDED_BY_GRAPH = YES
CALL_GRAPH = NO
CALLER_GRAPH = NO
GRAPHICAL_HIERARCHY = YES
DIRECTORY_GRAPH = YES
DOT_IMAGE_FORMAT = png
DOT_PATH =
DOTFILE_DIRS =
MAX_DOT_GRAPH_WIDTH = 1024
MAX_DOT_GRAPH_HEIGHT = 1024
MAX_DOT_GRAPH_DEPTH = 0
DOT_TRANSPARENT = NO
DOT_MULTI_TARGETS = NO
GENERATE_LEGEND = YES
DOT_CLEANUP = YES
#---------------------------------------------------------------------------
# Configuration::additions related to the search engine
#---------------------------------------------------------------------------
SEARCHENGINE = YES

27
tags/paradiseo1.2-patch1/paradiseo-peo/tutorial/Lesson3/param
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@ -1,27 +0,0 @@
###### Param ######
--popSize=20 # -P : Population size
--maxGen=200 # -G : Maximum number of generations
--mutEpsilon=0.01 # -e : epsilon for mutation
--pCross=0.80 # -C : Crossover probability
--pMut=0.30 # -M : Mutation probability
--vecSize=2 # -V : Vector size
--pMin=-2.0 # -N : Init position min
--pMax=2.0 # -X : Init position max
--vMin=-1.0 # -n : Init velocity min
--vMax=1.0 # -x : Init velocity max
--neighSize=6 # -H : Neighborhood size
--weight=1.0 # -w : Weight
--c1=0.5 # -1 : C1
--c2=2.0 # -2 : C2
--migFreq=10 # -F : Migration frequency
--migSize=5 # -S : Migration size
## miscallenous parameters
--debug=false
## deployment schema
--schema=schema.xml

20
tags/paradiseo1.2-patch1/paradiseo-peo/tutorial/Lesson3/schema.xml
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@ -1,20 +0,0 @@
<?xml version="1.0"?>
<schema>
<group scheduler="0">
<node name="0" num_workers="0">
</node>
<node name="1" num_workers="0">
<runner>1</runner>
<runner>2</runner>
</node>
<node name="2" num_workers="1">
</node>
<node name="3" num_workers="1">
</node>
</group>
</schema>

81
tags/paradiseo1.2-patch1/paradiseo-peo/tutorial/Lesson4/CMakeLists.txt
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@ -1,81 +0,0 @@
######################################################################################
### 0) Set the compiler and define targets to easily run the lessons
######################################################################################
SET (CMAKE_CXX_COMPILER mpicxx)
#ADD_CUSTOM_TARGET(install DEPENDS ${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson4/param ${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson4/schema.xml)
#ADD_CUSTOM_COMMAND(
# TARGET install
# POST_BUILD
# COMMAND ${CMAKE_COMMAND}
# ARGS -E copy_if_different
# ${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson4/param
# ${ParadisEO-PEO_BINARY_DIR}/tutorial/Lesson4)
#ADD_CUSTOM_COMMAND(
# TARGET install
# POST_BUILD
# COMMAND ${CMAKE_COMMAND}
# ARGS -E copy_if_different
# ${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson4/schema.xml
# ${ParadisEO-PEO_BINARY_DIR}/tutorial/Lesson4)
EXECUTE_PROCESS(
COMMAND ${CMAKE_COMMAND} -E copy_if_different
${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson4/param
${ParadisEO-PEO_BINARY_DIR}/tutorial/Lesson4
COMMAND ${CMAKE_COMMAND} -E copy_if_different
${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson4/schema.xml
${ParadisEO-PEO_BINARY_DIR}/tutorial/Lesson4
)
######################################################################################
######################################################################################
### 1) Include the sources
######################################################################################
INCLUDE_DIRECTORIES(${EO_SRC_DIR}/src ${MOEO_SRC_DIR}/src ${MO_SRC_DIR}/src ${ParadisEO-PEO_SOURCE_DIR}/src ${TSP_SRC_DIR})
######################################################################################
######################################################################################
### 2) Specify where CMake can find the libraries
######################################################################################
LINK_DIRECTORIES(${EO_BIN_DIR}/lib ${MOEO_BIN_DIR}/lib ${ParadisEO-PEO_BINARY_DIR}/lib ${TSP_BINARY_DIR}/lib)
######################################################################################
######################################################################################
### 3) Define your target(s): just an executable here
######################################################################################
ADD_EXECUTABLE(eals mainEALS.cpp)
ADD_DEPENDENCIES(eals tsp peo rmc_mpi)
######################################################################################
######################################################################################
### 4) Optionnal: define properties
######################################################################################
SET(LESSON4_VERSION ${GLOBAL_VERSION})
SET_TARGET_PROPERTIES(eals PROPERTIES VERSION "${LESSON4_VERSION}")
######################################################################################
######################################################################################
### 5) Link the librairies
######################################################################################
TARGET_LINK_LIBRARIES(eals ${XML2_LIBS} tsp peo rmc_mpi eo eoutils peo)
######################################################################################

114
tags/paradiseo1.2-patch1/paradiseo-peo/tutorial/Lesson4/mainEALS.cpp
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@ -1,114 +0,0 @@
/*
* <mainEALS.cpp>
* Copyright (C) DOLPHIN Project-Team, INRIA Futurs, 2006-2008
* (C) OPAC Team, INRIA, 2008
*
* Clive Canape
*
* This software is governed by the CeCILL license under French law and
* abiding by the rules of distribution of free software. You can use,
* modify and/ or redistribute the software under the terms of the CeCILL
* license as circulated by CEA, CNRS and INRIA at the following URL
* "http://www.cecill.info".
*
* As a counterpart to the access to the source code and rights to copy,
* modify and redistribute granted by the license, users are provided only
* with a limited warranty and the software's author, the holder of the
* economic rights, and the successive licensors have only limited liability.
*
* In this respect, the user's attention is drawn to the risks associated
* with loading, using, modifying and/or developing or reproducing the
* software by the user in light of its specific status of free software,
* that may mean that it is complicated to manipulate, and that also
* therefore means that it is reserved for developers and experienced
* professionals having in-depth computer knowledge. Users are therefore
* encouraged to load and test the software's suitability as regards their
* requirements in conditions enabling the security of their systems and/or
* data to be ensured and, more generally, to use and operate it in the
* same conditions as regards security.
* The fact that you are presently reading this means that you have had
* knowledge of the CeCILL license and that you accept its terms.
*
* ParadisEO WebSite : http://paradiseo.gforge.inria.fr
* Contact: paradiseo-help@lists.gforge.inria.fr
*
*/
#include "param.h"
#include "route_init.h"
#include "route_eval.h"
#include "order_xover.h"
#include "edge_xover.h"
#include "partial_mapped_xover.h"
#include "city_swap.h"
#include "part_route_eval.h"
#include "merge_route_eval.h"
#include "two_opt_init.h"
#include "two_opt_next.h"
#include "two_opt_incr_eval.h"
#include <peo>
#define POP_SIZE 10
#define NUM_GEN 100
#define CROSS_RATE 1.0
#define MUT_RATE 0.01
int main (int __argc, char * * __argv)
{
peo :: init (__argc, __argv);
loadParameters (__argc, __argv);
RouteInit route_init;
RouteEval full_eval;
OrderXover order_cross;
PartialMappedXover pm_cross;
EdgeXover edge_cross;
CitySwap city_swap_mut;
// Initialization of the local search
TwoOptInit pmx_two_opt_init;
TwoOptNext pmx_two_opt_next;
TwoOptIncrEval pmx_two_opt_incr_eval;
moBestImprSelect <TwoOpt> pmx_two_opt_move_select;
moHC <TwoOpt> hc (pmx_two_opt_init, pmx_two_opt_next, pmx_two_opt_incr_eval, pmx_two_opt_move_select, full_eval);
// EA
eoPop <Route> pop (POP_SIZE, route_init);
eoGenContinue <Route> cont (NUM_GEN);
eoCheckPoint <Route> checkpoint (cont);
eoEvalFuncCounter< Route > eval(full_eval);
eoStochTournamentSelect <Route> select_one;
eoSelectNumber <Route> select (select_one, POP_SIZE);
eoSGATransform <Route> transform (order_cross, CROSS_RATE, city_swap_mut, MUT_RATE);
eoEPReplacement <Route> replace (2);
eoEasyEA< Route > eaAlg( checkpoint, eval, select, transform, replace );
peoWrapper parallelEA( eaAlg, pop);
peo :: run ();
peo :: finalize ();
if (getNodeRank()==1)
{
pop.sort();
std :: cout << "\nResult before the local search\n";
for (unsigned i=0;i<pop.size();i++)
std::cout<<"\n"<<pop[i].fitness();
}
// Local search
peo :: init (__argc, __argv);
peoMultiStart <Route> initParallelHC (hc);
peoWrapper parallelHC (initParallelHC, pop);
initParallelHC.setOwner(parallelHC);
peo :: run( );
peo :: finalize( );
if (getNodeRank()==1)
{
std :: cout << "\nResult after the local search\n";
pop.sort();
for (unsigned i=0;i<pop.size();i++)
std::cout<<"\n"<<pop[i].fitness();
}
}

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