Migration from SVN

moeo/tutorial/Lesson4/CMakeLists.txt

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+# Lesson 4
+
+######################################################################################
+### 0) Define files
+######################################################################################
+
+set(files FlowShopDMLS)
+    
+######################################################################################
+### 1) Create the lesson 
+######################################################################################
+
+add_lesson(moeo Lesson4 "${files}")
+
+include_directories(${EO_SRC_DIR}/src)
+include_directories(${MOEO_SRC_DIR}/src)
+include_directories(${FLOWSHOP_SRC_DIR})
+
+######################################################################################
+### 2) Include dependencies
+######################################################################################
+
+target_link_libraries(FlowShopDMLS moeo flowshop eo eoutils)

moeo/tutorial/Lesson4/FlowShopDMLS.cpp

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+/*
+* <FlowShopDMLS.cpp>
+* Copyright (C) DOLPHIN Project-Team, INRIA Futurs, 2006-2007
+* (C) OPAC Team, LIFL, 2002-2007
+*
+* Arnaud Liefooghe
+* Jérémie Humeau
+*
+* This software is governed by the CeCILL license under French law and
+* abiding by the rules of distribution of free software.  You can  use,
+* modify and/ or redistribute the software under the terms of the CeCILL
+* license as circulated by CEA, CNRS and INRIA at the following URL
+* "http://www.cecill.info".
+*
+* As a counterpart to the access to the source code and  rights to copy,
+* modify and redistribute granted by the license, users are provided only
+* with a limited warranty  and the software's author,  the holder of the
+* economic rights,  and the successive licensors  have only  limited liability.
+*
+* In this respect, the user's attention is drawn to the risks associated
+* with loading,  using,  modifying and/or developing or reproducing the
+* software by the user in light of its specific status of free software,
+* that may mean  that it is complicated to manipulate,  and  that  also
+* therefore means  that it is reserved for developers  and  experienced
+* professionals having in-depth computer knowledge. Users are therefore
+* encouraged to load and test the software's suitability as regards their
+* requirements in conditions enabling the security of their systems and/or
+* data to be ensured and,  more generally, to use and operate it in the
+* same conditions as regards security.
+* The fact that you are presently reading this means that you have had
+* knowledge of the CeCILL license and that you accept its terms.
+*
+* ParadisEO WebSite : http://paradiseo.gforge.inria.fr
+* Contact: paradiseo-help@lists.gforge.inria.fr
+*
+*/
+//-----------------------------------------------------------------------------
+
+
+// moeo general include
+#include <moeo>
+// for the creation of an evaluator
+#include <make_eval_FlowShop.h>
+// for the creation of an initializer
+#include <make_genotype_FlowShop.h>
+// for the creation of the variation operators
+#include <make_op_FlowShop.h>
+// how to initialize the population
+#include <do/make_pop.h>
+// checks for help demand, and writes the status file and make_help; in libutils
+void make_help(eoParser & _parser);
+// definition of the representation
+#include <FlowShop.h>
+
+#include <problems/permutation/moShiftNeighbor.h>
+#include <neighborhood/moOrderNeighborhood.h>
+#include <utils/moeoFullEvalByCopy.h>
+
+using namespace std;
+
+
+int main(int argc, char* argv[])
+{
+    try
+    {
+
+    	//define a neighbor
+        typedef moShiftNeighbor<FlowShop, FlowShopObjectiveVector> Neighbor;
+
+        eoParser parser(argc, argv);  // for user-parameter reading
+        eoState state;                // to keep all things allocated
+
+        unsigned int maxGen = parser.createParam((unsigned int)(100), "maxGen", "Maximum number of gen.",'G',"Stopping criterion").value();
+        unsigned int nhSize = parser.createParam((unsigned int)(20), "nhSize", "neighborhood size",'G',"Evolution Engine").value();
+
+        /*** the representation-dependent things ***/
+
+        // The fitness evaluation
+        eoEvalFuncCounter<FlowShop>& eval = do_make_eval(parser, state);
+        // the genotype (through a genotype initializer)
+        eoInit<FlowShop>& init = do_make_genotype(parser, state);
+
+        /*** the representation-independent things ***/
+
+        // initialization of the population
+        eoPop<FlowShop>& pop = do_make_pop(parser, state, init);
+        // definition of the archive
+        moeoUnboundedArchive<FlowShop> arch;
+        // stopping criteria
+
+        //Continuator
+        eoGenContinue<FlowShop> term(maxGen);
+
+        // checkpointing
+        eoCheckPoint<FlowShop> checkpoint(term);
+        moeoArchiveUpdater < FlowShop > updater(arch, pop);
+        checkpoint.add(updater);
+
+        //neighborhood
+        moOrderNeighborhood<Neighbor> neighborhood((nhSize-1) * (nhSize-1));
+        //neighbor Evaluation function
+        moeoFullEvalByCopy<Neighbor> moEval(eval);
+
+        //Selection in the archive
+        moeoNumberUnvisitedSelect<FlowShop> select(1);
+        //explorer
+        moeoFirstImprovingNeighborhoodExplorer<Neighbor> explor(neighborhood, moEval);
+
+        //DMLS(1.1>)
+        moeoUnifiedDominanceBasedLS<Neighbor> algo(checkpoint, eval, arch, explor, select);
+
+
+        /*** Go ! ***/
+
+        // help ?
+        make_help(parser);
+
+        // first evalution (for printing)
+        apply<FlowShop>(eval, pop);
+        for(unsigned int i=0; i<pop.size(); i++)
+        	pop[i].fitness(0);
+
+
+        // printing of the initial population
+        cout << "Initial Population\n";
+        pop.sortedPrintOn(cout);
+        cout << endl;
+
+        // run the algo
+        algo(pop);
+
+        // printing of the final archive
+        cout << "Final Archive\n";
+        arch.sortedPrintOn(cout);
+        cout << endl;
+
+
+    }
+    catch (exception& e)
+    {
+        cout << e.what() << endl;
+    }
+    return EXIT_SUCCESS;
+}

moeo/tutorial/Lesson4/FlowShopDMLS.param

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+
+######                 General    ######
+# --help=0                                 # -h : Prints this message
+# --stopOnUnknownParam=1                   # Stop if unkown param entered
+# --seed=1275660123                        # -S : Random number seed
+
+######    Evolution Engine        ######
+# --nhSize=20                              # -G : neighborhood size
+# --popSize=20                             # -P : Population Size
+
+######    Persistence             ######
+# --Load=                                  # -L : A save file to restart from
+# --recomputeFitness=0                     # -r : Recompute the fitness after re-loading the pop.?
+# --status=./FlowShopDMLS.status           # Status file
+
+######    Representation          ######
+# --BenchmarkFile=../examples/flowshop/benchs/020_20_01.txt # -B : Benchmark file name
+
+######    Stopping criterion      ######
+# --maxGen=100                             # -G : Maximum number of gen.