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git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@2696 331e1502-861f-0410-8da2-ba01fb791d7f
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boufaras 2012-01-30 09:43:10 +00:00
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13
tags/ParadisEO-GPU-1.1/AUTHORS Normal file
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Jean-Charles Boisson
Sébastien Cahon
Clive Canape
Laetitia Jourdan
Thomas Legrand
Arnaud Liefooghe
Nouredine Melab
El-Ghazali Talbi
Alexandru-Adrian Tantar
Sebastien Verel
Jérémie Humeau
Karima Boufaras
Thé van Luong

319635
tags/ParadisEO-GPU-1.1/downloads/cudatoolkit_3.2.16_linux_32_ubuntu10.04.run Executable file
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tags/ParadisEO-GPU-1.1/downloads/devdriver_3.2_linux_32_260.19.26.run Executable file
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tags/ParadisEO-GPU-1.1/installParadiseo-gpu.sh Normal file
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#!/bin/sh
#########################################################################################
#
# Project : paradisEO-GPU full package install
# File : installParadiseo-gpu.sh
# Comment : # This file attempts to install ParadisEO-GPU #
#
#########################################################################################
# global variables
installStartTime=$SECONDS
resourceKitPath=$PWD
TAR_MSG=" "
DIE=0
PROG=ParadisEO-GPU
CMAKE_PRIMARY_CONFIG_FILE=install.cmake
HOME_PATH=$HOME
CUDA=" " #****
bash_path='$PATH'
library_path='$LD_LIBRARY_PATH'
# generator types available on Unix platforms
P_UNIX_MAKEFILES=1
G_UNIX_MAKEFILES="Unix Makefiles"
# should we compile ParadisEO ?
COMPILE_PARADISEO=1
# Build types
DEFAULT_BUILD_TYPE=Release
BUILD_TYPE=$DEFAULT_BUILD_TYPE
# CMake/CTest/Dart flags
CTEST_DEFAULT_CONFIG="-D ExperimentalStart -D ExperimentalBuild -D ExperimentalTest"
CTEST_CONFIG=$CTEST_DEFAULT_CONFIG
# What are the tests that should be always run ?
MIN_CMAKE_FLAGS='-DENABLE_MINIMAL_CMAKE_TESTING=TRUE'
# install types to select in the main menu
P_FULL_INSTALL=1
P_RM_PREVIOUS_INSTALLL=2
P_EXIT_INSTALL=3
IS_CUDA_INSTALLED=1
# install steps
S_INTRODUCTION=1000
S_UNPACK_EO=1001
S_INSTALL_EO=1002
S_INSTALL_MO=1003
S_INSTALL_CUDA=1004 #****
S_INSTALL_GPU=1005 #****
S_CONFIGURE_ENV=1006
S_REMOVE_INSTALL=1007
S_END=1008
#S_CHECK_AUTOTOOLS=1018
#### define what are the possible installs and their content
# full install
FULL_INSTALL="$S_INTRODUCTION $S_INSTALL_EO $S_INSTALL_MO $S_INSTALL_CUDA $S_INSTALL_GPU $S_END"
# remove a previous install
RM_PREVIOUS_INSTALL="$S_REMOVE_INSTALL"
#others
LIBS_PATH=lib
# errors
SUCCESSFUL_STEP=0
EO_UNPACKING_ERROR=100
EO_INSTALL_ERROR=104
MO_INSTALL_ERROR=108
GPU_INSTALL_ERROR=112 #****
CUDA_INSTALLING_ERROR=116 #****
REMOVE_TEMP_DIRECTORY_ERROR=113
VAR_CONFIG_ERROR=114
RM_PARADISEO_EO_ERROR=119
DART_SUBMISSION_ERROR=64
#Date
DATE=`/bin/date '+%Y%m%d%H%M%S'`
# create log file
SPY=$PWD/logs/install-paradiseo-gpu.${DATE}.log
#------------------------------------------------------#
#-- FUNCTION : execute_cmd ---#
#------------------------------------------------------#
#-- PARAMETERS : ---#
#-- $1 : cmd line ---#
#-- $2 : comment ---#
#-- $3 : spy file ---#
#-- $4 : output std file ---#
#-- $5 : error log file ---#
#-- ---#
#------------------------------------------------------#
#-- CODE RETURN : 0 : OK ---#
#-- CODE RETURN : 1 : NOK ---#
#------------------------------------------------------#
function execute_cmd
{
COMMAND=${1}
COMMENT=${2}
FIC_ESP=${3}
FIC_OUT=${4}
FIC_ERR=${5}
if [ `echo ${FIC_OUT} | wc -c` -eq 1 ]
then
FIC_OUT=${FIC_ESP}
fi
if [ `echo ${FIC_ERR} | wc -c` -eq 1 ]
then
FIC_ERR=${FIC_ESP}
fi
echo "" >> ${FIC_ESP}
echo "[execute_cmd][Begin][`/bin/date +%H:%M:%S`]" >> ${FIC_ESP}
echo "------------------------------------------------------------------------------------------------------------" >> ${FIC_ESP}
echo "${COMMENT}" >> ${FIC_ESP}
echo "------------------------------------------------------------------------------------------------------------" >> ${FIC_ESP}
echo "${COMMAND}" >> ${FIC_ESP}
${COMMAND} >> ${FIC_OUT} 2>> ${FIC_ERR}
RETURN_CODE=$?
echo "RETURN_CODE : ${RETURN_CODE}" >> ${FIC_ESP}
if [ ${RETURN_CODE} -eq 0 ]
then
echo " ${COMMENT} OK" >> ${FIC_ESP}
echo "[execute_cmd][End][`/bin/date +%H:%M:%S`]" >> ${FIC_ESP}
return 0
else
echo " $ERROR_TAG ${COMMENT} NOK" >> ${FIC_ESP}
return ${RETURN_CODE}
fi
}
#------------------------------------------------------#
#-- FUNCTION : on_error ---#
#------------------------------------------------------#
#-- PARAMETERS : ---#
#-- Error number ---#
#------------------------------------------------------#
#-- RETURN: ---#
#------------------------------------------------------#
function on_error()
{
case $1 in
$CUDA_INSTALLING_ERROR)
echo
echo " An error has occured : impossible to install CudaToolkit.See $SPY for more details"
echo "If you need help, please contact paradiseo-help@lists.gforge.inria.fr and join $SPY"
echo
echo
kill $$;;
$EO_INSTALL_ERROR)
echo
echo " An error has occured : impossible to install Paradiseo-EO.See $SPY for more details"
echo "If you need help, please contact paradiseo-help@lists.gforge.inria.fr and join $SPY"
echo
echo
kill $$;;
$MO_INSTALL_ERROR)
echo
echo " An error has occured : impossible to install Paradiseo-MO.See $SPY for more details"
echo " => To report any problem or for help, please contact paradiseo-help@lists.gforge.inria.fr and join $SPY"
echo
kill $$;;
$MOEO_INSTALL_ERROR)
echo
echo " An error has occured : impossible to install Paradiseo-MOEO.See $SPY for more details"
echo " => To report any problem or for help, please contact paradiseo-help@lists.gforge.inria.fr and join $SPY"
echo
kill $$;;
$RM_PARADISEO_EO_ERROR)
echo
echo " An error has occured : impossible to remove ParadisEO-EO. See $SPY for more details"
echo " You may not have a previous ParadisEO install available in the current directory"
echo " => To report any problem or for help, please contact paradiseo-help@lists.gforge.inria.fr and join $SPY"
echo
kill $$;;
$SUCCESSFUL_STEP)
;;
*)
echo
;;
esac
}
#------------------------------------------------------#
#-- FUNCTION : run_install_step ---#
#------------------------------------------------------#
#-- PARAMETERS : ---#
#-- install path ---#
#-- step to launch (0,1 ...) ---#
#-- counter for loop ---#
#-- Major function for install ---#
#------------------------------------------------------#
#-- RETURN: 0 if install OK ---#
#------------------------------------------------------#
function run_install_step()
{
installKitPath=$1
stepToRun=$2
currentStepCounter=$3
RETURN=0
case "$stepToRun" in
$S_INTRODUCTION)
########## Introduction #########
clear
echo ""
echo -e ' \033[40m\033[1;33m### ParadisEO-GPU install starting .... ### \033[0m '
echo
echo "Installing the environment for ParadisEO-GPU... To avoid build and test reports to be sent to our repository, please stop the program and restart it using the --skipdart option."
sleep 6
echo
echo
return $SUCCESSFUL_STEP
;;
$S_INSTALL_EO)
########## installing paradiseo-eo ##########
echo -e " \033[40m\033[1;34m# STEP $currentStepCounter \033[0m "
echo ' --> Installing Paradiseo-EO. Please wait ...'
if [ ! "$installKitPath" = "$resourceKitPath" ]
then
cp -Rf $resourceKitPath/paradiseo-eo/ $installKitPath/
rm -Rf $installKitPath/paradiseo-eo/build
fi
execute_cmd "mkdir $installKitPath/paradiseo-eo/build" "[$currentStepCounter-1] Create build directory" $SPY
execute_cmd "cd $installKitPath/paradiseo-eo/build" "[$currentStepCounter-2] Go in Paradiseo-EO build dir" $SPY
RETURN=`expr $RETURN + $?`
execute_cmd " echo \"cmake ../ -G$BUILD_PROCESS_TYPE $MIN_CMAKE_FLAGS $OPTIONNAL_CMAKE_FLAGS\" " "[$currentStepCounter-3] Run CMake using generator $BUILD_PROCESS_TYPE" $SPY
cmake ../ -G"$BUILD_PROCESS_TYPE" -DCMAKE_BUILD_TYPE=$BUILD_TYPE $MIN_CMAKE_FLAGS $OPTIONNAL_CMAKE_FLAGS >> ${SPY} 2>> ${SPY}
RETURN=`expr $RETURN + $?`
if [ "$COMPILE_PARADISEO" = "1" ]
then
execute_cmd "ctest $CTEST_CONFIG" "[$currentStepCounter-4] Compile ParadisEO-EO using CTest" $SPY
LAST_RETURN=$?
# don't consider a submission error as a "right error"
if [ ! "$LAST_RETURN" = "$DART_SUBMISSION_ERROR" ]
then
RETURN=`expr $RETURN + $LAST_RETURN`
fi
fi
if [ ! $(($RETURN)) = 0 ]
then
echo ''
echo " --> Error when installing Paradiseo-EO"
echo -e ' \033[40m\033[1;33m### END ### \033[0m '
return $EO_INSTALL_ERROR
else
echo -e " \033[40m\033[1;34m# STEP $currentStepCounter OK \033[0m"
echo
return $SUCCESSFUL_STEP
fi
;;
$S_INSTALL_MO)
########## installing paradiseo-mo ##########
echo -e " \033[40m\033[1;34m# STEP $currentStepCounter \033[0m "
echo ' --> Installing Paradiseo-MO. Please wait ...'
if [ ! "$installKitPath" = "$resourceKitPath" ]
then
cp -Rf $resourceKitPath/paradiseo-mo/ $installKitPath/
cp $resourceKitPath/install.cmake $installKitPath/
rm -Rf $installKitPath/paradiseo-mo/build/*
fi
execute_cmd "cd $installKitPath/paradiseo-mo/build" "[$currentStepCounter-1] Go in Paradiseo-MO dir" $SPY
RETURN=$?
execute_cmd " echo \"cmake ../ -Dconfig=$installKitPath/$CMAKE_PRIMARY_CONFIG_FILE -G\"$BUILD_PROCESS_TYPE\" $MIN_CMAKE_FLAGS $OPTIONNAL_CMAKE_FLAGS -DCMAKE_BUILD_TYPE=$BUILD_TYPE\" " "[$currentStepCounter-2] Run CMake using generator $BUILD_PROCESS_TYPE -Dconfig=$installKitPath/$CMAKE_PRIMARY_CONFIG_FILE" $SPY
cmake ../ -Dconfig=$installKitPath/$CMAKE_PRIMARY_CONFIG_FILE -G"$BUILD_PROCESS_TYPE" -DCMAKE_BUILD_TYPE=$BUILD_TYPE $MIN_CMAKE_FLAGS $OPTIONNAL_CMAKE_FLAGS>> ${SPY} 2>> ${SPY}
RETURN=`expr $RETURN + $?`
if [ "$COMPILE_PARADISEO" = "1" ]
then
execute_cmd "ctest $CTEST_CONFIG" "[$currentStepCounter-3] Compile ParadisEO-MO using CTest" $SPY
LAST_RETURN=$?
# don't consider a submission error as a "right error"
if [ ! "$LAST_RETURN" = "$DART_SUBMISSION_ERROR" ]
then
RETURN=`expr $RETURN + $LAST_RETURN`
fi
fi
if [ ! $(($RETURN)) = 0 ]
then
echo ''
echo " --> Error when installing Paradiseo-MO"
echo -e ' \033[40m\033[1;33m### END ### \033[0m '
return $MO_INSTALL_ERROR
else
echo -e " \033[40m\033[1;34m# STEP $currentStepCounter OK \033[0m"
echo
return $SUCCESSFUL_STEP
fi
;;
$S_INSTALL_CUDA)
########## installing cudaToolkit 3.2##########
echo -e " \033[40m\033[1;34m# STEP $currentStepCounter \033[0m "
echo ' --> installing cudaToolkit (required for ParadisEO-GPU) ...'
execute_cmd "cd $installKitPath/downloads/" "[$currentStepCounter-2] Go in downloads dir" $SPY
sudo ./cudatoolkit_3.2.16_linux_32_ubuntu10.04.run
RETURN=$?
if [ ! "$?" = "0" ]
then
echo ''
echo " --> Error when installing cudaToolkit"
echo -e ' \033[40m\033[1;33m### END ### \033[0m '
return $CUDA_INSTALLING_ERROR
else
echo -e " \033[40m\033[1;34m# STEP $currentStepCounter OK \033[0m"
echo
return $SUCCESSFUL_STEP
fi
kill $?;;
$S_INSTALL_GPU)
########## installing paradiseo-gpu ##########
echo -e " \033[40m\033[1;34m# STEP $currentStepCounter \033[0m "
echo ' --> Installing Paradiseo-GPU. Please wait ...'
if [ ! "$installKitPath" = "$resourceKitPath" ]
then
cp -Rf $resourceKitPath/paradiseo-gpu/ $installKitPath/
cp $resourceKitPath/install.cmake $installKitPath/
rm -Rf $installKitPath/paradiseo-gpu/build/*
fi
execute_cmd "cd $installKitPath/paradiseo-gpu/build" "[$currentStepCounter-1] Go in Paradiseo-GPU dir" $SPY
RETURN=$?
execute_cmd " echo \"cmake ../ -G\"$BUILD_PROCESS_TYPE\" $MIN_CMAKE_FLAGS $OPTIONNAL_CMAKE_FLAGS -DCMAKE_BUILD_TYPE=$BUILD_TYPE\" " "[$currentStepCounter-2] Run CMake using generator $BUILD_PROCESS_TYPE" $SPY
cmake ../ -Dconfig=$installKitPath/$CMAKE_PRIMARY_CONFIG_FILE -G"$BUILD_PROCESS_TYPE" -DCMAKE_BUILD_TYPE=$BUILD_TYPE $MIN_CMAKE_FLAGS $OPTIONNAL_CMAKE_FLAGS>> ${SPY} 2>> ${SPY}
RETURN=`expr $RETURN + $?`
if [ "$COMPILE_PARADISEO" = "1" ]
then
execute_cmd "ctest $CTEST_CONFIG" "[$currentStepCounter-3] Compile ParadisEO-GPU using CTest" $SPY
LAST_RETURN=$?
# don't consider a submission error as a "right error"
if [ ! "$LAST_RETURN" = "$DART_SUBMISSION_ERROR" ]
then
RETURN=`expr $RETURN + $LAST_RETURN`
fi
fi
if [ ! $(($RETURN)) = 0 ]
then
echo ''
echo " --> Error when installing Paradiseo-GPU"
echo -e ' \033[40m\033[1;33m### END ### \033[0m '
return $GPU_INSTALL_ERROR
else
echo -e " \033[40m\033[1;34m# STEP $currentStepCounter OK \033[0m"
echo
return $SUCCESSFUL_STEP
fi
;;
$S_REMOVE_INSTALL)
########## removing a previous install of EO ##########
echo -e " \033[40m\033[1;34m# STEP $currentStepCounter \033[0m "
echo ' --> Removing your previous install of ParadisEO-GPU ...'
execute_cmd "rm -Rf $installKitPath/paradiseo-eo/build/*" "[$currentStepCounter] Remove $installKitPath/paradiseo-eo/build/*" $SPY
idx=$?
execute_cmd "rm -Rf $installKitPath/paradiseo-mo/build/*" "[$currentStepCounter] Remove $installKitPath/paradiseo-mo/build/*" $SPY
idx=`expr $idx + $?`
execute_cmd "rm -Rf $installKitPath/paradiseo-gpu/build/*" "[$currentStepCounter] Remove $installKitPath/paradiseo-gpu/build/*" $SPY
idx=`expr $idx + $?`
if [ ! $(($idx)) = 0 ]
then
echo ''
echo " --> Error when removing previous install of ParadisEO"
echo -e ' \033[40m\033[1;33m### END ### \033[0m '
return $RM_UTIL_ERROR
else
echo -e " \033[40m\033[1;34m# STEP $currentStepCounter OK \033[0m"
echo -e "Please \033[40m\033[1;33m CLOSE YOUR TERMINAL OR OPEN A NEW ONE \033[0m before proceeding with a new installation."
echo
return $SUCCESSFUL_STEP
fi
;;
$S_END)
echo
echo
echo -e " \033[40m\033[1;34m# SUCCESSFULL INSTALLATION. \033[0m"
echo
return $SUCCESSFUL_STEP
;;
*)
;;
esac
}
########################################################
######### BODY ########
#########################################################
(cmake --version) < /dev/null > /dev/null 2>&1 ||
{
echo "You must have CMake installed to compile $PROG. Please update your system to get it before installing $PROG."
execute_cmd "echo \"You must have CMake installed to compile $PROG. Please update your system to get it before installing $PROG.\"" "[0-3] Check autoconf" $SPY
DIE=1
}
if [ "$DIE" = "1" ]
then
exit 1
fi
########################################################################
# Simple menu
# The options are :
# --prefix
# --debug
# --skipdart
# --help
#######################################################################
INSTALL_TREATENED=0
INSTALL_PATH=$PWD
for i in $*
do
if [ "${i%=*}" = "--help" ] || [ "${i%=*}" = "-h" ]
then
clear
echo "installParadiseo-gpu.sh"
echo
echo -e "\033[1mNAME\033[0m"
echo ' installParadiseo-gpu.sh - Install ParadisEO-GPU'
echo
echo -e "\033[1mSYNOPSIS\033[0m"
echo -e ' \033[1m./installParadiseo-gpu.sh\033[0m or \033[1mbash installParadiseo-gpu.sh\033[0m'
echo -e ' [\033[1m--prefix=\033[0m\033[4mPATH\033[0m] [\033[1m--debug\033[0m] [\033[1m--skipdart\033[0m] [\033[1m--home=\033[0m\033[4mHOME\033[0m] [\033[1m-h\033[0m] [\033[1m--help\033[0m]'
echo
echo -e "\033[1mDESCRIPTION\033[0m"
echo -e " \033[1m--prefix=\033[0m\033[4mPATH\033[0m"
echo -e " ParadisEO-GPU will be installed in the directory \033[0m\033[4mPATH\033[0m. The current directory is used by default."
echo
echo -e " \033[1m--debug\033[0m"
echo ' Debug mode, set warning compiler flags and run tests.'
echo
echo -e " \033[1m--skipdart\033[0m"
echo ' Use this option to avoid build/test report submission to our Dart server.'
echo
echo -e " \033[1m--home=\033[0m\033[4mHOME\033[0m"
echo -e " Using \033[0m\033[4mHOME\033[0m as your home directory. Should be used when ~ doesnt reference your home. "
echo
echo -e " \033[1m-h, --help\033[0m"
echo ' Print these useful lines.'
echo
echo -e "\033[1mAUTHOR\033[0m"
echo " Written by Karima Boufaras."
echo
echo -e "\033[1mBUGS\033[0m"
echo " Report bugs to paradiseo-bugs@lists.gforge.inria.fr."
echo
echo -e "\033[1mCOPYRIGHT\033[0m"
echo " This software is governed by the CeCILL license under French law and"
echo " abiding by the rules of distribution of free software. You can use,"
echo " modify and/ or redistribute the software under the terms of the CeCILL"
echo " license as circulated by CEA, CNRS and INRIA at the following URL"
echo " http://www.cecill.info. "
echo
echo -e "\033[1mSEE ALSO\033[0m"
echo " For further help, please contact paradiseo-help@lists.gforge.inria.fr."
echo
exit
fi
if [ "${i%=*}" = "--prefix" ]
then
INSTALL_PATH=${i#*=}
fi
if [ "${i%=*}" = "--debug" ]
then
BUILD_TYPE=Debug
OPTIONNAL_CMAKE_FLAGS='-DENABLE_CMAKE_TESTING=TRUE'
CTEST_CONFIG="$CTEST_CONFIG -D ExperimentalTest"
fi
if [ "${i%=*}" = "--skipdart" ]
then
SKIP_DART="1"
fi
if [ "${i%=*}" = "--home" ]
then
HOME_PATH=${i#*=}
fi
done
#######################################################################
### Do we have a valid home path ?
if [ ! -d $HOME_PATH ]
then
echo " Please give a valid path for your home directory (use --help for further information)"
fi
### Add a CTest flag depending on the "skipdart" option.
if [ ! "$SKIP_DART" = "1" ]
then
CTEST_CONFIG="$CTEST_CONFIG -D ExperimentalSubmit"
fi
### Need the generator
BUILD_PROCESS_TYPE="$G_UNIX_MAKEFILES"
GENERATOR_TREATENED=1
while [ ! "$INSTALL_TREATENED" = "1" ]
do
case "$INSTALL_TYPE" in
$P_FULL_INSTALL)
counter=0
for step in $FULL_INSTALL
do
run_install_step $INSTALL_PATH $step $counter
on_error $?
counter=`expr $counter + 1`
done
INSTALL_TREATENED=1
;;
$P_RM_PREVIOUS_INSTALLL)
counter=0
for step in $RM_PREVIOUS_INSTALL
do
run_install_step $INSTALL_PATH $step $counter
on_error $?
counter=`expr $counter + 1`
done
INSTALL_TREATENED=1
;;
$P_EXIT_INSTALL)
INSTALL_TREATENED=1
;;
*)
echo
echo -e ' \033[40m\033[1;33m### Please select your install for ParadisEO : ### \033[0m '
echo
echo " 1 : Full install (all the components : EO,MO and GPU)"
echo " 2 : Remove a previous install of ParadisEO located in $INSTALL_PATH"
echo " 3 : Exit install"
read INSTALL_TYPE
;;
esac
done

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tags/ParadisEO-GPU-1.1/paradiseo-eo/AUTHORS Normal file
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Pedro Angel Castillo Valdivieso
Juan Julian Merelo Guervos
Victor Manuel Rivas Santos
Gustavo Romero Lopez
Maarten Keijzer
Marc Schoenauer
Jeroen Eggermont
Jochen K<>pper
Thomas Legrand
Clive Canape
Johann Dréo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>

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tags/ParadisEO-GPU-1.1/paradiseo-eo/BuildConfig.cmake Normal file
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# the user should choose the build type on windows environments,excepted under cygwin (default=none)
#SET(CMAKE_DEFAULT_BUILD_TYPE "Release" CACHE STRING "Variable that stores the default CMake build type" FORCE)
#SET(CMAKE_BUILD_TYPE Debug) # allows to enable assert calls and -g flag
FIND_PROGRAM(MEMORYCHECK_COMMAND
NAMES purify valgrind
PATHS
"/usr/local/bin /usr/bin [HKEY_LOCAL_MACHINE\\SOFTWARE\\Rational Software\\Purify\\Setup;InstallFolder]"
DOC "Path to the memory checking command, used for memory error detection.")
IF(NOT CMAKE_BUILD_TYPE)
SET( CMAKE_BUILD_TYPE
${CMAKE_DEFAULT_BUILD_TYPE} CACHE STRING
"Choose the type of build, options are: Debug Release RelWithDebInfo MinSizeRel."
FORCE)
ENDIF(NOT CMAKE_BUILD_TYPE)
IF(WIN32 AND NOT CYGWIN)
IF(CMAKE_CXX_COMPILER MATCHES cl)
IF(NOT WITH_SHARED_LIBS)
IF(CMAKE_GENERATOR STREQUAL "Visual Studio 8 2005" OR CMAKE_GENERATOR STREQUAL "Visual Studio 9 2008")
SET(CMAKE_CXX_FLAGS "/nologo /Gy")
SET(CMAKE_CXX_FLAGS_DEBUG "/W3 /MTd /Z7 /Od")
SET(CMAKE_CXX_FLAGS_RELEASE "/w /MT /O2 /wd4530")
SET(CMAKE_CXX_FLAGS_MINSIZEREL "/MT /O2")
SET(CMAKE_CXX_FLAGS_RELWITHDEBINFO "/MTd /Z7 /Od")
SET(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} /SUBSYSTEM:CONSOLE")
ENDIF(CMAKE_GENERATOR STREQUAL "Visual Studio 8 2005" OR CMAKE_GENERATOR STREQUAL "Visual Studio 9 2008")
ENDIF(NOT WITH_SHARED_LIBS)
ENDIF(CMAKE_CXX_COMPILER MATCHES cl)
ELSE(WIN32 AND NOT CYGWIN)
IF(CMAKE_COMPILER_IS_GNUCXX)
# SET(CMAKE_CXX_FLAGS_DEBUG "${CMAKE_CXX_FLAGS_DEBUG} -O0 -g -fprofile-arcs -ftest-coverage -Wall -Wextra -Wno-unused-parameter")
SET(CMAKE_CXX_FLAGS_DEBUG "${CMAKE_CXX_FLAGS_DEBUG} -O0 -g -Wall -Wextra -Wno-unused-parameter")
SET(CMAKE_CXX_FLAGS_RELEASE "${CMAKE_CXX_FLAGS_RELEASE} -O3")
SET(CMAKE_CXX_FLAGS_MINSIZEREL "${CMAKE_CXX_FLAGS_MINSIZEREL} -O6")
ENDIF(CMAKE_COMPILER_IS_GNUCXX)
ENDIF(WIN32 AND NOT CYGWIN)
IF(CMAKE_BUILD_TYPE MATCHES Debug)
ADD_DEFINITIONS(-DCMAKE_VERBOSE_MAKEFILE=ON)
ENDIF(CMAKE_BUILD_TYPE MATCHES Debug)

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tags/ParadisEO-GPU-1.1/paradiseo-eo/CHANGELOG Normal file
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tags/ParadisEO-GPU-1.1/paradiseo-eo/CMakeLists.txt Normal file
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######################################################################################
### 0) If you want to set your variables in eo-conf.cmake and avoid the cmd line
######################################################################################
INCLUDE(eo-conf.cmake OPTIONAL)
######################################################################################
######################################################################################
### 1) Main project config
######################################################################################
# set the project name and other variables
PROJECT(EO)
#SET(PROJECT_VERSION_MAJOR 1)
#SET(PROJECT_VERSION_MINOR 1)
#SET(PROJECT_VERSION_PATCH 1)
SET(PROJECT_VERSION "${PROJECT_VERSION_MAJOR}.${PROJECT_VERSION_MINOR}.${PROJECT_VERSION_PATCH}" CACHE STRING "Package version" FORCE)
SET(VERSION "${PROJECT_VERSION_MAJOR}.${PROJECT_VERSION_MINOR}${PROJECT_VERSION_MISC}" CACHE STRING "Global version" FORCE)
SET(GLOBAL_VERSION "${VERSION}")
SET(PACKAGE_BUGREPORT "eodev-help@sourceforge.net" CACHE STRING "Package bug report" FORCE)
SET(PACKAGE_NAME "Evolving Objects" CACHE STRING "Package name" FORCE)
SET(PACKAGE_STRING "${PACKAGE_NAME} ${PACKAGE_VERSION}"CACHE STRING "Package string full name" FORCE)
SET(PACKAGE_TARNAME "eo" CACHE STRING "Package tar name" FORCE)
# check cmake version compatibility
CMAKE_MINIMUM_REQUIRED(VERSION 2.6)
# regular expression checking
INCLUDE_REGULAR_EXPRESSION("^.*$" "^$")
# set a language for the entire project.
ENABLE_LANGUAGE(CXX)
ENABLE_LANGUAGE(C)
######################################################################################
#####################################################################################
### 2) Include required modules / configuration files
#####################################################################################
FIND_PACKAGE(OpenMP REQUIRED)
IF(OPENMP_FOUND)
SET(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} ${OpenMP_C_FLAGS}")
SET(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${OpenMP_CXX_FLAGS}")
ENDIF()
INCLUDE(CMakeBackwardCompatibilityCXX)
INCLUDE(FindDoxygen)
INCLUDE(FindGnuplot)
INCLUDE(CheckLibraryExists)
IF(UNIX)
INCLUDE(ConfigureChecks.cmake)
ENDIF(UNIX)
INCLUDE(Dart OPTIONNAL)
# now create config headers
CONFIGURE_FILE(config.h.cmake ${CMAKE_CURRENT_BINARY_DIR}/config.h)
# now create config install_symlink script file
CONFIGURE_FILE(install_symlink.py.cmake ${CMAKE_CURRENT_BINARY_DIR}/install_symlink.py)
# Set a special flag if the environment is windows (should do the same in a config.g file)
IF (WIN32)
ADD_DEFINITIONS(-D_WINDOWS=1)
ENDIF (WIN32)
######################################################################################
#####################################################################################
### 3) Manage the build type
#####################################################################################
INCLUDE(BuildConfig.cmake)
######################################################################################
######################################################################################
### compilation of examples?
######################################################################################
SET(ENABLE_CMAKE_EXAMPLE TRUE CACHE BOOL "Enable copy of benchs and parameters file?")
######################################################################################
######################################################################################
### 4) Test config
######################################################################################
IF (ENABLE_CMAKE_TESTING)
ENABLE_TESTING()
ENDIF (ENABLE_CMAKE_TESTING)
######################################################################################
######################################################################################
### 5) Where must cmake go now ?
######################################################################################
#ADD_SUBDIRECTORY(app)
ADD_SUBDIRECTORY(doc)
ADD_SUBDIRECTORY(src)
ADD_SUBDIRECTORY(test)
ADD_SUBDIRECTORY(tutorial)
######################################################################################
######################################################################################
### 6) Install pkg-config config file for EO
######################################################################################
SET(PCPREFIX "/usr")
SET(PCFLAGS "-leoutils -leo -les -lga -lcma -lgcov")
SET(PCINCLUDEDIR "eo")
CONFIGURE_FILE(pc.cmake ${CMAKE_CURRENT_BINARY_DIR}/eo.pc)
INSTALL(FILES ${CMAKE_CURRENT_BINARY_DIR}/eo.pc DESTINATION lib/pkgconfig COMPONENT headers)
######################################################################################
######################################################################################
### 7) Include packaging
######################################################################################
INCLUDE(Packaging.cmake)
######################################################################################

502
tags/ParadisEO-GPU-1.1/paradiseo-eo/COPYING Normal file
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@ -0,0 +1,502 @@
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That's all there is to it!

7
tags/ParadisEO-GPU-1.1/paradiseo-eo/CTestConfig.cmake Normal file
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@ -0,0 +1,7 @@
set(CTEST_PROJECT_NAME "ParadisEO")
set(CTEST_NIGHTLY_START_TIME "00:00:00 EST")
set(CTEST_DROP_METHOD "http")
set(CTEST_DROP_SITE "cdash.inria.fr")
set(CTEST_DROP_LOCATION "/CDash/submit.php?project=ParadisEO")
set(CTEST_DROP_SITE_CDASH TRUE)

29
tags/ParadisEO-GPU-1.1/paradiseo-eo/ConfigureChecks.cmake Normal file
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@ -0,0 +1,29 @@
# NOTE: only add something here if it is really needed by EO
INCLUDE(CheckIncludeFile)
INCLUDE(CheckIncludeFiles)
INCLUDE(CheckSymbolExists)
INCLUDE(CheckFunctionExists)
INCLUDE(CheckLibraryExists)
CHECK_LIBRARY_EXISTS(m cos "/usr/lib" HAVE_LIBM)
CHECK_INCLUDE_FILES(math.h "math.h" HAVE_MATH_H)
CHECK_INCLUDE_FILES(stdio.h "stdio.h" HAVE_STDIO_H)
CHECK_INCLUDE_FILES(stdlib.h "stdlib.h" HAVE_STDLIB_H)
CHECK_INCLUDE_FILES(string.h "string.h" HAVE_STRING_H)
CHECK_INCLUDE_FILES(strings.h "strings.h" HAVE_STRINGS_H)
CHECK_INCLUDE_FILES(malloc.h "malloc.h" HAVE_MALLOC_H)
CHECK_INCLUDE_FILES(limits.h "limits.h" HAVE_LIMITS_H)
CHECK_INCLUDE_FILES(unistd.h "unistd.h" HAVE_UNISTD_H)
CHECK_INCLUDE_FILES(stdint.h "stdint.h" HAVE_STDINT_H)
# Use check_symbol_exists to check for symbols in a reliable
# cross-platform manner. It accounts for different calling
# conventions and the possibility that the symbol is defined as a
# macro. Note that some symbols require multiple includes in a
# specific order. Refer to the man page for each symbol for which a
# check is to be added to get the proper set of headers. Example :
#check_symbol_exists(asymbol "symbole.h" HAVE_SYMBOLE)

13
tags/ParadisEO-GPU-1.1/paradiseo-eo/ForRelease Normal file
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@ -0,0 +1,13 @@
In order to create a new release from the current repository, perform the
following steps:
- Create a branch named "eo_x.y.z"
- Set version number in eo-conf.cmake
- Check/update NEWS file, set release date and version in NEWS.
- use the "archive_current.sh" script to create the source archive
- Build the packages
- Put source archive and packages files at SourceForge
- Post news on SourceForge project-page
- Send announcement to mailing lists
- Bump version number to next "x.y.z-edge" in eo-conf.cmake

86
tags/ParadisEO-GPU-1.1/paradiseo-eo/INSTALL Normal file
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Basic Installation
==================
The simplest way to compile the libraries or the provided softwares is to run
one of the script beginnig with "build_". Each script permits to build different
parts of the framework, with different options.
To compile EO you will need CMake and a compiler for your system.
So far the available scripts for posix systems using g++ are the following:
* build_gcc_linux_release : the most usefull script, build the core libraries in release mode
* build_gcc_linux_debug : build the core libraries with debugging informations in the binaries
* build_gcc_linux_tutorial : build the core libraries and the tutorials
* build_gcc_linux_unittest : build the core libraries and the tests executables
* build_gcc_linux_stl_parallel : build the core libraries enabling STL parallel algorithms (like sorting)
* build_gcc_linux_pyeo : build the core libraries and the python module
* distclean : remove the "release/" and "debug/" directories where the build scripts put the binaries
For Windows systems using Visual Studio:
* build_vs2008_release.bat
You may need to adapt the ID to your version of Visual Studio, edit
the "Visual Studio 9 2008" string accordingly.
The libraries are in the "release/lib/" or "debug/lib/" directories.
Compilers and Options
=====================
The build scripts are really simple, take a look at them to see how to use the
build system.
Basically, the steps are:
0. remove any old build directory that's on the way:
rm -rf build/
1. create a directory in which to put build files:
mkdir build/
2. go in this directory:
cd build/
3. call cmake with the options you want, using the "-D" option and passing the
EO directory as an argument, for example:
cmake -DCMAKE_BUILD_TYPE=Debug -DENABLE_CMAKE_TESTING =1 ..
4. now type your favorite "make" command, like:
make -j # use several processors at once when possible
5. enjoy:
./debug/test/t-eofitness
Some of the available options are:
* CMAKE_BUILD_TYPE :
* "Debug" : embed debugging informations in the binaries) or
* "Release" : no debugging info and some optimizations (the default)
* ENABLE_EO_TUTORIAL : build the tutorial ("no" by default)
* ENABLE_CMAKE_TESTING : build the tests executables ("no" by default)
* ENABLE_PYEO : build the python module ("no" by default)
You can pass generic options to the compiler, like:
* _GLIBCXX_PARALLEL : use the parallel version of the STL
Installation using packages
===========================
To construct a dummy template of the EO package you will need CPack. Be warned
that those do not guarantee correct dependencies and version management.
Use the "package_*" scripts:
* package_deb : for debian-like systems
* package_rpm : for red-hat-like systems
Or go through the following steps:
1. go in the build directory where your binaries are:
cd build/
2. call CPack specifying the desired package system:
cpack -G DEB
3. install the package:
sudo apt-get install EO-1.1.1-Linux.deb
Basic installation
==================
To install the framework system-wide, copy the "eo/" directory somewhere in your
path. The "lib/" directory should be reachable for the linker and the "src/"
directory must be in the compiler include path.

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That's all there is to it!

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* release 1.2 (10. May. 2011)
- fixed the incremental allocation issue in the variation operator which were
taking too much time for big population sizes
- new class eoParallel enabling parallelization in EO using OpenMP. At this
time, it only concerns the evaluation operator, for advanced details go to
the file test/t-eoParallel.cpp. The default parallelization mode is off, to
switch it on, see the parameters prefixed by --parallelize-*
- pyeo compatible with the last version of Boost and Python libraries
- script installing EO manually in using symbolic links
- evaluators that throw an exception if a maximum time has been reached
(wallclock and CPU user time for POSIX systems), independently of the number of generations
* release 1.1 (8. Nov. 2010)
- provide cmake build system, remove the old autotools one
- package generation system
- GCC 4.3 compatibility
- new versatile log system with several nested verbose levels
- classes using intern verbose parameters marked as deprecated, please update your code accordingly if you use one of the following files:
eo/src/eoCombinedInit.h
eo/src/eoGenContinue.h
eo/src/eoProportionalCombinedOp.h
eo/src/utils/eoData.h
eo/src/utils/eoStdoutMonitor.h
- an evaluator that throw an exception if a maximum eval numbers has been reached, independently of the number of generations
- new monitor that can write on any ostream
- new continuator that can catch POSIX system user signals
- dual fitness class to handle feasibility of individual with guarantee that feasible fitness will always be better than unfeasible one
- feasible fitness ratio stat
- interquartile range stat
- average size of individuals stat
- uniform(min,max) random function
- compatibility macros for compiling paradiseo with CUDACC
- removed old multi-objective classes, deprecated by the Paradiseo-MOEO project
- new website, switch from CVS to GIT, and a cool logo!
* release 1.0.1 (23. Jan. 2006)
- Templates/ improvements
* release 1.0 (29. Dec. 2006)
- Implement CMA-ES.
- Update introductory pages of documentation and webpage.
- Add Microsoft Visual C++ project support files (for Visual Studio 2003 and 2005)
- Upgrade Teamplates/ script to create a complete standalone EO project (using autotools)
- Remove support for pre-standard C++ compiler (i.e. gcc-2.x), which allows to
clean up the code considerably.
Assume availability of sstream and limits.
* release 0.9.3z.1 (1. Oct. 2005)
- Support gcc-3.4 and gcc.4.x.
- Provide full automake/autoconf/configure support.

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######################################################################################
### 1) Check dependencies
######################################################################################
IF (NOT DEFINED PROJECT_NAME OR
NOT DEFINED PROJECT_VERSION_MAJOR OR
NOT DEFINED PROJECT_VERSION_MINOR OR
NOT DEFINED PROJECT_VERSION_PATCH OR
NOT DEFINED PROJECT_VERSION)
MESSAGE(FATAL_ERROR "Be sure you have defined PROJECT_NAME and PROJECT_VERSION*.")
ENDIF()
######################################################################################
######################################################################################
### 2) Set up components
######################################################################################
SET(CPACK_COMPONENTS_ALL libraries test examples)
SET(CPACK_ALL_INSTALL_TYPES Minimal Full)
SET(CPACK_COMPONENT_LIBRARIES_DISPLAY_NAME "${PACKAGE_NAME}")
SET(CPACK_COMPONENT_LIBRARIES_DESCRIPTION "${PACKAGE_NAME} library")
SET(CPACK_COMPONENT_LIBRARIES_GROUP "Devel")
SET(CPACK_COMPONENT_LIBRARIES_INSTALL_TYPES Minimal Full)
SET(CPACK_COMPONENT_TEST_DISPLAY_NAME "${PACKAGE_NAME}")
SET(CPACK_COMPONENT_TEST_DESCRIPTION "${PACKAGE_NAME} test")
SET(CPACK_COMPONENT_TEST_GROUP "Devel")
SET(CPACK_COMPONENT_TEST_INSTALL_TYPES Full)
SET(CPACK_COMPONENT_EXAMPLES_DISPLAY_NAME "${PACKAGE_NAME}")
SET(CPACK_COMPONENT_EXAMPLES_DESCRIPTION "${PACKAGE_NAME} examples")
SET(CPACK_COMPONENT_EXAMPLES_GROUP "Devel")
SET(CPACK_COMPONENT_EXAMPLES_INSTALL_TYPES Full)
######################################################################################
######################################################################################
### 3) Set up general information about packaging
######################################################################################
# For more details: http://www.cmake.org/Wiki/CMake:Component_Install_With_CPack
#cpack package information
SET(CPACK_PACKAGE_DESCRIPTION_FILE "${CMAKE_CURRENT_SOURCE_DIR}/README")
SET(CPACK_PACKAGE_DESCRIPTION "${PACKAGE_NAME}")
SET(CPACK_RESOURCE_FILE_LICENSE "${CMAKE_CURRENT_SOURCE_DIR}/LICENSE")
SET(CPACK_PACKAGE_DESCRIPTION_SUMMARY "${PACKAGE_NAME}")
SET(CPACK_PACKAGE_VENDOR "${PACKAGE_NAME}")
SET(CPACK_PACKAGE_CONTACT "${PACKAGE_BUGREPORT}")
SET(CPACK_PACKAGE_VERSION ${PROJECT_VERSION})
SET(CPACK_STRIP_FILES ${PROJECT_NAME})
SET(CPACK_SOURCE_STRIP_FILES "bin/${PROJECT_NAME}")
SET(CPACK_PACKAGE_EXECUTABLES "${PROJECT_NAME}" "${PROJECT_NAME}")
SET(CPACK_PACKAGE_VERSION_MAJOR "${PROJECT_VERSION_MAJOR}")
SET(CPACK_PACKAGE_VERSION_MINOR "${PROJECT_VERSION_MINOR}")
SET(CPACK_PACKAGE_VERSION_PATCH "${PROJECT_VERSION_PATCH}")
SET(CPACK_PACKAGE_INSTALL_DIRECTORY "${PROJECT_NAME} ${PROJECT_VERSION_MAJOR}.${PROJECT_VERSION_MINOR}")
######################################################################################
######################################################################################
### 4) Set up debian packaging information
######################################################################################
SET(CPACK_DEBIAN_PACKAGE_DEPENDS "libstdc++6, libgcc1, libc6, g++")
SET(CPACK_DEBIAN_PACKAGE_SECTION "devel")
SET(CPACK_DEBIAN_PACKAGE_PRIORITY "optional")
######################################################################################
######################################################################################
### 5) And finally, include cpack, this is the last thing to do.
######################################################################################
INCLUDE(CPack)
######################################################################################

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EO README FILE
=======================================================================
check latest news at http://eodev.sourceforge.net/
=======================================================================
Welcome to EO, the Evolving Objects library.
The latest news about EO can be found on the sourceforge repository at
http://eodev.sourceforge.net/
In case of any problem, please e-mail us at
eodev-main@lists.sourceforge.net
To get started, take a look at the tutorial, starting with
./tutorial/html/eoTutorial.html
The easiest way to start programming a new genome with all EO
evolution engines handy is to create a new standalone EO project from
the tutorial/Templates/ directory. Read Lesson 5 of the tutorial for
an introduction ;)
==================================================================
BUILDING EO
==================================================================
The basic installation procedure goes the following:
Go to the "eo/" and run one of the "build_*" script. 
Using the "build_gcc_linux_release" script is generally what you want. The
binaries are then located in the "release/" directory.
Now you should probably go to the tutorial and start learning about EO
features and programming.
In case of problems or if you want advanced options, you can read the INSTALL file.
===================================================================
DIRECTORY STRUCTURE
===================================================================
After unpacking the archive file, you should end up with the following
structure:
.../ the MAIN EO dir, created when unpacking
|
+-- src SOURCE dir. Contains most EO .h files
| |
| +- utils general utilities (e.g. RNG-related source files)
| |
| +- ga bistring-genotypes source files
| |
| +- es real-valued-genotypes source files
| |
| +- gp Genetic Programming source files
| |
| +- obsolete files from old versions - for upward compatibility
|
|
|
+-- tutorial TUTORIAL dir (indeed :-)
| |
| +- html all html files - start by browsing index.html
| |
| +- LessonX for X=1, 2, 3, ... : example of increasing complexity
|
|
|
+-- doc DOCUMENTATION dir (generated by Doxygen)
| |
| +- html HTML files - start at index.html (see also tutorial)
| |
| +- latex latex files - use to generate Poatscript doc.
| |
| +- man Unix man format documentation
|
|
+-- test TEST files - for debugging purposes only
|
|
+-- app APPLICATIONS - one dir per separate application
| |
| +- gprop GA/backpropagation for neural nets
| |
| +- mastermind the wellknown MasterMind game
|
|
+-- win WINDOWS dir: project files for MS/VC5+

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See the code-documentation for details.
General ToDos should be documented at the end of doc/index.h.

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######################################################################################
### 1) Where must cmake go now ?
######################################################################################
#ADD_SUBDIRECTORY(gprop)
#ADD_SUBDIRECTORY(gpsymreg)
ADD_SUBDIRECTORY(mastermind)
######################################################################################

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