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merge ParadisEO-MOEO v-1.0

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git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@400 331e1502-861f-0410-8da2-ba01fb791d7f
This commit is contained in:
liefooga 2007-06-26 13:28:59 +00:00
commit 8b7d5260fb
724 changed files with 63305 additions and 2757 deletions
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18
trunk/paradiseo-moeo/src/do/make_checkpoint_moeo.h
View file

@ -21,11 +21,11 @@
#include <utils/selectors.h>
#include <utils/eoParser.h>
#include <utils/eoState.h>
#include <moeoArchiveUpdater.h>
#include <moeoArchiveObjectiveVectorSavingUpdater.h>
#include <metric/moeoBinaryMetricSavingUpdater.h>
#include <metric/moeoContributionMetric.h>
#include <metric/moeoEntropyMetric.h>
#include <utils/moeoArchiveUpdater.h>
#include <utils/moeoArchiveObjectiveVectorSavingUpdater.h>
#include <utils/moeoBinaryMetricSavingUpdater.h>
bool testDirRes(std::string _dirName, bool _erase);
@ -44,16 +44,16 @@ eoCheckPoint < MOEOT > & do_make_checkpoint_moeo (eoParser & _parser, eoState &
eoCheckPoint < MOEOT > & checkpoint = _state.storeFunctor(new eoCheckPoint < MOEOT > (_continue));
/* the objective vector type */
typedef typename MOEOT::ObjectiveVector ObjectiveVector;
///////////////////
// Counters
//////////////////
// is nb Eval to be used as counter?
//bool useEval = _parser.getORcreateParam(true, "useEval", "Use nb of eval. as counter (vs nb of gen.)", '\0', "Output").value();
// Create anyway a generation-counter parameter
eoValueParam<unsigned> *generationCounter = new eoValueParam<unsigned>(0, "Gen.");
eoValueParam<unsigned int> *generationCounter = new eoValueParam<unsigned int>(0, "Gen.");
// Create an incrementor (sub-class of eoUpdater).
eoIncrementor<unsigned> & increment = _state.storeFunctor( new eoIncrementor<unsigned>(generationCounter->value()) );
eoIncrementor<unsigned int> & increment = _state.storeFunctor( new eoIncrementor<unsigned int>(generationCounter->value()) );
// Add it to the checkpoint
checkpoint.add(increment);
// dir for DISK output
@ -77,13 +77,13 @@ eoCheckPoint < MOEOT > & do_make_checkpoint_moeo (eoParser & _parser, eoState &
//////////////////////////////
// feed the state to state savers
// save state every N generation
eoValueParam<unsigned>& saveFrequencyParam = _parser.createParam(unsigned(0), "saveFrequency", "Save every F generation (0 = only final state, absent = never)", '\0', "Persistence" );
eoValueParam<unsigned int>& saveFrequencyParam = _parser.createParam((unsigned int)(0), "saveFrequency", "Save every F generation (0 = only final state, absent = never)", '\0', "Persistence" );
if (_parser.isItThere(saveFrequencyParam))
{
// first make sure dirName is OK
if (! dirOK )
dirOK = testDirRes(dirName, eraseParam.value()); // TRUE
unsigned freq = (saveFrequencyParam.value()>0 ? saveFrequencyParam.value() : UINT_MAX );
unsigned int freq = (saveFrequencyParam.value()>0 ? saveFrequencyParam.value() : UINT_MAX );
#ifdef _MSVC
std::string stmp = dirName + "\generations";
#else
@ -94,7 +94,7 @@ eoCheckPoint < MOEOT > & do_make_checkpoint_moeo (eoParser & _parser, eoState &
checkpoint.add(*stateSaver1);
}
// save state every T seconds
eoValueParam<unsigned>& saveTimeIntervalParam = _parser.getORcreateParam(unsigned(0), "saveTimeInterval", "Save every T seconds (0 or absent = never)", '\0',"Persistence" );
eoValueParam<unsigned int>& saveTimeIntervalParam = _parser.getORcreateParam((unsigned int)(0), "saveTimeInterval", "Save every T seconds (0 or absent = never)", '\0',"Persistence" );
if (_parser.isItThere(saveTimeIntervalParam) && saveTimeIntervalParam.value()>0)
{
// first make sure dirName is OK

6
trunk/paradiseo-moeo/src/do/make_continue_moeo.h
View file

@ -54,7 +54,7 @@ eoContinue<MOEOT> & do_make_continue_moeo(eoParser& _parser, eoState& _state, eo
eoCombinedContinue<MOEOT> *continuator = NULL;
// First the eoGenContinue - need a default value so you can run blind
// but we also need to be able to avoid it <--> 0
eoValueParam<unsigned>& maxGenParam = _parser.createParam(unsigned(100), "maxGen", "Maximum number of generations (0 = none)",'G',"Stopping criterion");
eoValueParam<unsigned int>& maxGenParam = _parser.createParam((unsigned int)(100), "maxGen", "Maximum number of generations (0 = none)",'G',"Stopping criterion");
if (maxGenParam.value()) // positive: -> define and store
{
eoGenContinue<MOEOT> *genCont = new eoGenContinue<MOEOT>(maxGenParam.value());
@ -63,7 +63,7 @@ eoContinue<MOEOT> & do_make_continue_moeo(eoParser& _parser, eoState& _state, eo
continuator = make_combinedContinue<MOEOT>(continuator, genCont);
}
// maxEval
eoValueParam<unsigned long>& maxEvalParam = _parser.getORcreateParam((unsigned long)0, "maxEval", "Maximum number of evaluations (0 = none)", 'E', "Stopping criterion");
eoValueParam<unsigned long>& maxEvalParam = _parser.getORcreateParam((unsigned long)(0), "maxEval", "Maximum number of evaluations (0 = none)", 'E', "Stopping criterion");
if (maxEvalParam.value())
{
eoEvalContinue<MOEOT> *evalCont = new eoEvalContinue<MOEOT>(_eval, maxEvalParam.value());
@ -72,7 +72,7 @@ eoContinue<MOEOT> & do_make_continue_moeo(eoParser& _parser, eoState& _state, eo
continuator = make_combinedContinue<MOEOT>(continuator, evalCont);
}
// maxTime
eoValueParam<unsigned long>& maxTimeParam = _parser.getORcreateParam((unsigned long)0, "maxTime", "Maximum running time in seconds (0 = none)", 'T', "Stopping criterion");
eoValueParam<unsigned long>& maxTimeParam = _parser.getORcreateParam((unsigned long)(0), "maxTime", "Maximum running time in seconds (0 = none)", 'T', "Stopping criterion");
if (maxTimeParam.value()) // positive: -> define and store
{
eoTimeContinue<MOEOT> *timeCont = new eoTimeContinue<MOEOT>(maxTimeParam.value());

127
trunk/paradiseo-moeo/src/do/make_ea_moeo.h
View file

@ -20,6 +20,7 @@
#include <eoGenOp.h>
#include <utils/eoParser.h>
#include <utils/eoState.h>
<<<<<<< .courant
#include <moeoArchive.h>
#include <moeoComparator.h>
#include <moeoCrowdingDistanceDiversityAssignment.h>
@ -37,7 +38,37 @@
#include <moeoReplacement.h>
#include <moeoSelectOne.h>
#include <moeoStochTournamentSelect.h>
=======
#include <algo/moeoEA.h>
#include <algo/moeoEasyEA.h>
#include <archive/moeoArchive.h>
#include <comparator/moeoAggregativeComparator.h>
#include <comparator/moeoComparator.h>
#include <comparator/moeoDiversityThenFitnessComparator.h>
#include <comparator/moeoFitnessThenDiversityComparator.h>
#include <diversity/moeoDiversityAssignment.h>
#include <diversity/moeoDummyDiversityAssignment.h>
#include <diversity/moeoFrontByFrontCrowdingDistanceDiversityAssignment.h>
#include <diversity/moeoFrontByFrontSharingDiversityAssignment.h>
#include <fitness/moeoFastNonDominatedSortingFitnessAssignment.h>
#include <fitness/moeoDummyFitnessAssignment.h>
#include <fitness/moeoFitnessAssignment.h>
#include <fitness/moeoIndicatorBasedFitnessAssignment.h>
#include <metric/moeoAdditiveEpsilonBinaryMetric.h>
#include <metric/moeoHypervolumeBinaryMetric.h>
>>>>>>> .fusion-droit.r399
#include <metric/moeoNormalizedSolutionVsSolutionBinaryMetric.h>
#include <replacement/moeoElitistReplacement.h>
#include <replacement/moeoEnvironmentalReplacement.h>
#include <replacement/moeoGenerationalReplacement.h>
#include <replacement/moeoReplacement.h>
#include <selection/moeoDetTournamentSelect.h>
#include <selection/moeoRandomSelect.h>
#include <selection/moeoStochTournamentSelect.h>
#include <selection/moeoSelectOne.h>
#include <selection/moeoSelectors.h>
/**
* This functions allows to build a moeoEA from the parser
@ -57,10 +88,10 @@ moeoEA < MOEOT > & do_make_ea_moeo(eoParser & _parser, eoState & _state, eoEvalF
/* the fitness assignment strategy */
string & fitnessParam = _parser.createParam(string("FastNonDominatedSorting"), "fitness",
std::string & fitnessParam = _parser.createParam(std::string("FastNonDominatedSorting"), "fitness",
"Fitness assignment scheme: Dummy, FastNonDominatedSorting or IndicatorBased", 'F',
"Evolution Engine").value();
string & indicatorParam = _parser.createParam(string("Epsilon"), "indicator",
std::string & indicatorParam = _parser.createParam(std::string("Epsilon"), "indicator",
"Binary indicator for IndicatorBased: Epsilon, Hypervolume", 'i',
"Evolution Engine").value();
double rho = _parser.createParam(1.1, "rho", "reference point for the hypervolume indicator", 'r',
@ -68,76 +99,96 @@ moeoEA < MOEOT > & do_make_ea_moeo(eoParser & _parser, eoState & _state, eoEvalF
double kappa = _parser.createParam(0.05, "kappa", "Scaling factor kappa for IndicatorBased", 'k',
"Evolution Engine").value();
moeoFitnessAssignment < MOEOT > * fitnessAssignment;
if (fitnessParam == string("Dummy"))
if (fitnessParam == std::string("Dummy"))
{
fitnessAssignment = new moeoDummyFitnessAssignment < MOEOT> ();
}
else if (fitnessParam == string("FastNonDominatedSorting"))
else if (fitnessParam == std::string("FastNonDominatedSorting"))
{
fitnessAssignment = new moeoFastNonDominatedSortingFitnessAssignment < MOEOT> ();
}
else if (fitnessParam == string("IndicatorBased"))
else if (fitnessParam == std::string("IndicatorBased"))
{
// metric
moeoNormalizedSolutionVsSolutionBinaryMetric < ObjectiveVector, double > *metric;
if (indicatorParam == string("Epsilon"))
if (indicatorParam == std::string("Epsilon"))
{
metric = new moeoAdditiveEpsilonBinaryMetric < ObjectiveVector >;
}
else if (indicatorParam == string("Hypervolume"))
else if (indicatorParam == std::string("Hypervolume"))
{
metric = new moeoHypervolumeBinaryMetric < ObjectiveVector > (rho);
}
else
{
string stmp = string("Invalid binary quality indicator: ") + indicatorParam;
std::string stmp = std::string("Invalid binary quality indicator: ") + indicatorParam;
throw std::runtime_error(stmp.c_str());
}
fitnessAssignment = new moeoIndicatorBasedFitnessAssignment < MOEOT> (metric, kappa);
fitnessAssignment = new moeoIndicatorBasedFitnessAssignment < MOEOT > (*metric, kappa);
}
else
{
string stmp = string("Invalid fitness assignment strategy: ") + fitnessParam;
std::string stmp = std::string("Invalid fitness assignment strategy: ") + fitnessParam;
throw std::runtime_error(stmp.c_str());
}
_state.storeFunctor(fitnessAssignment);
/* the diversity assignment strategy */
string & diversityParam = _parser.createParam(string("Dummy"), "diversity",
"Diversity assignment scheme: Dummy or CrowdingDistance", 'D', "Evolution Engine").value();
eoValueParam<eoParamParamType> & diversityParam = _parser.createParam(eoParamParamType("Dummy"), "diversity",
"Diversity assignment scheme: Dummy, Sharing(nicheSize) or Crowding", 'D', "Evolution Engine");
eoParamParamType & diversityParamValue = diversityParam.value();
moeoDiversityAssignment < MOEOT > * diversityAssignment;
if (diversityParam == string("CrowdingDistance"))
{
diversityAssignment = new moeoCrowdingDistanceDiversityAssignment < MOEOT> ();
}
else if (diversityParam == string("Dummy"))
if (diversityParamValue.first == std::string("Dummy"))
{
diversityAssignment = new moeoDummyDiversityAssignment < MOEOT> ();
}
else if (diversityParamValue.first == std::string("Sharing"))
{
double nicheSize;
if (!diversityParamValue.second.size()) // no parameter added
{
std::cerr << "WARNING, no niche size given for Sharing, using 0.5" << std::endl;
nicheSize = 0.5;
diversityParamValue.second.push_back(std::string("0.5"));
}
else
{
nicheSize = atoi(diversityParamValue.second[0].c_str());
}
diversityAssignment = new moeoFrontByFrontSharingDiversityAssignment < MOEOT> (nicheSize);
}
else if (diversityParamValue.first == std::string("Crowding"))
{
diversityAssignment = new moeoFrontByFrontCrowdingDistanceDiversityAssignment < MOEOT> ();
}
else
{
string stmp = string("Invalid diversity assignment strategy: ") + diversityParam;
std::string stmp = std::string("Invalid diversity assignment strategy: ") + diversityParamValue.first;
throw std::runtime_error(stmp.c_str());
}
_state.storeFunctor(diversityAssignment);
/* the comparator strategy */
string & comparatorParam = _parser.createParam(string("FitnessThenDiversity"), "comparator",
"Comparator scheme: FitnessThenDiversity or DiversityThenFitness", 'C', "Evolution Engine").value();
std::string & comparatorParam = _parser.createParam(std::string("FitnessThenDiversity"), "comparator",
"Comparator scheme: FitnessThenDiversity, DiversityThenFitness or Aggregative", 'C', "Evolution Engine").value();
moeoComparator < MOEOT > * comparator;
if (comparatorParam == string("FitnessThenDiversity"))
if (comparatorParam == std::string("FitnessThenDiversity"))
{
comparator = new moeoFitnessThenDiversityComparator < MOEOT> ();
}
else if (comparatorParam == string("DiversityThenFitness"))
else if (comparatorParam == std::string("DiversityThenFitness"))
{
comparator = new moeoDiversityThenFitnessComparator < MOEOT> ();
}
else if (comparatorParam == std::string("Aggregative"))
{
comparator = new moeoAggregativeComparator < MOEOT> ();
}
else
{
string stmp = string("Invalid comparator strategy: ") + comparatorParam;
std::string stmp = std::string("Invalid comparator strategy: ") + comparatorParam;
throw std::runtime_error(stmp.c_str());
}
_state.storeFunctor(comparator);
@ -148,15 +199,15 @@ moeoEA < MOEOT > & do_make_ea_moeo(eoParser & _parser, eoState & _state, eoEvalF
"Selection scheme: DetTour(T), StochTour(t) or Random", 'S', "Evolution Engine");
eoParamParamType & ppSelect = selectionParam.value();
moeoSelectOne < MOEOT > * select;
if (ppSelect.first == string("DetTour"))
if (ppSelect.first == std::string("DetTour"))
{
unsigned tSize;
unsigned int tSize;
if (!ppSelect.second.size()) // no parameter added
{
cerr << "WARNING, no parameter passed to DetTour, using 2" << endl;
std::cerr << "WARNING, no parameter passed to DetTour, using 2" << std::endl;
tSize = 2;
// put back 2 in parameter for consistency (and status file)
ppSelect.second.push_back(string("2"));
ppSelect.second.push_back(std::string("2"));
}
else // parameter passed by user as DetTour(T)
{
@ -164,15 +215,15 @@ moeoEA < MOEOT > & do_make_ea_moeo(eoParser & _parser, eoState & _state, eoEvalF
}
select = new moeoDetTournamentSelect < MOEOT > (*comparator, tSize);
}
else if (ppSelect.first == string("StochTour"))
else if (ppSelect.first == std::string("StochTour"))
{
double tRate;
if (!ppSelect.second.size()) // no parameter added
{
cerr << "WARNING, no parameter passed to StochTour, using 1" << endl;
std::cerr << "WARNING, no parameter passed to StochTour, using 1" << std::endl;
tRate = 1;
// put back 1 in parameter for consistency (and status file)
ppSelect.second.push_back(string("1"));
ppSelect.second.push_back(std::string("1"));
}
else // parameter passed by user as StochTour(T)
{
@ -180,42 +231,44 @@ moeoEA < MOEOT > & do_make_ea_moeo(eoParser & _parser, eoState & _state, eoEvalF
}
select = new moeoStochTournamentSelect < MOEOT > (*comparator, tRate);
}
/*
else if (ppSelect.first == string("Roulette"))
{
// TO DO !
// ...
}
else if (ppSelect.first == string("Random"))
*/
else if (ppSelect.first == std::string("Random"))
{
select = new moeoRandomSelect <MOEOT > ();
}
else
{
string stmp = string("Invalid selection strategy: ") + ppSelect.first;
std::string stmp = std::string("Invalid selection strategy: ") + ppSelect.first;
throw std::runtime_error(stmp.c_str());
}
_state.storeFunctor(select);
/* the replacement strategy */
string & replacementParam = _parser.createParam(string("Elitist"), "replacement",
std::string & replacementParam = _parser.createParam(std::string("Elitist"), "replacement",
"Replacement scheme: Elitist, Environmental or Generational", 'R', "Evolution Engine").value();
moeoReplacement < MOEOT > * replace;
if (replacementParam == string("Elitist"))
if (replacementParam == std::string("Elitist"))
{
replace = new moeoElitistReplacement < MOEOT> (*fitnessAssignment, *diversityAssignment, *comparator);
}
else if (replacementParam == string("Environmental"))
else if (replacementParam == std::string("Environmental"))
{
replace = new moeoEnvironmentalReplacement < MOEOT> (*fitnessAssignment, *diversityAssignment, *comparator);
}
else if (replacementParam == string("Generational"))
else if (replacementParam == std::string("Generational"))
{
replace = new moeoGenerationalReplacement < MOEOT> ();
}
else
{
string stmp = string("Invalid replacement strategy: ") + replacementParam;
std::string stmp = std::string("Invalid replacement strategy: ") + replacementParam;
throw std::runtime_error(stmp.c_str());
}
_state.storeFunctor(replace);