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git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1493 331e1502-861f-0410-8da2-ba01fb791d7f

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wcancino 2009-03-11 11:07:24 +00:00
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/***************************************************************************
* Copyright (C) 2008 by Waldo Cancino *
* wcancino@icmc.usp.br *
* *
* This program is free software; you can redistribute it and/or modify *
* it under the terms of the GNU General Public License as published by *
* the Free Software Foundation; either version 2 of the License, or *
* (at your option) any later version. *
* *
* This program is distributed in the hope that it will be useful, *
* but WITHOUT ANY WARRANTY; without even the implied warranty of *
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
* GNU General Public License for more details. *
* *
* You should have received a copy of the GNU General Public License *
* along with this program; if not, write to the *
* Free Software Foundation, Inc., *
* 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA. *
***************************************************************************/
#ifndef PHYLOMOEO_H_
#define PHYLOMOEO_H_
#include "phylotreeIND.h"
#include <iostream>
class ObjectiveVectorTraits : public moeoObjectiveVectorTraits
{
public:
static bool minimizing (int i)
{
return true;
}
static bool maximizing (int i)
{
return false;
}
static unsigned int nObjectives ()
{
return 2;
}
};
typedef moeoRealObjectiveVector < ObjectiveVectorTraits > ObjectiveVector;
class PhyloMOEO : public MOEO< ObjectiveVector, double, double >
{
private:
phylotreeIND *tree;
void copy(const PhyloMOEO &other)
{
if(tree!=NULL)delete tree;
tree=NULL;
if(other.tree!=NULL)tree = new phylotreeIND(other.get_tree());
if(!other.invalidObjectiveVector())this->objectiveVector( other.objectiveVector() );
if(!other.invalidFitness())this->fitness( other.fitness() );
if(!other.invalidDiversity())this->diversity( other.diversity() );
}
public:
PhyloMOEO() : MOEO < ObjectiveVector, double, double >() { tree = NULL; }
PhyloMOEO(const PhyloMOEO &other) : MOEO < ObjectiveVector, double, double >(other) {
tree=NULL;
if(other.tree!=NULL)tree = new phylotreeIND(other.get_tree());
}
void set_tree_template(phylotreeIND &other) { if(tree!=NULL)delete tree; tree = other.clone(); };
void set_random_tree(phylotreeIND &other) { if(tree!=NULL)delete tree; tree = other.randomClone(); };
PhyloMOEO& operator= (const PhyloMOEO& other) {
copy(other);
return *this;
}
void readFrom (std::istream &_is)
{
string s;
_is >> s;
tree->read_newick2( s );
}
phylotreeIND & get_tree() const { return *tree; }
~PhyloMOEO() { if(tree!=NULL)delete tree; }
};
#endif