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Added 'Viral' operators with test. Implements the Mobile Genetic Elements Technique

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jmerelo 2001-05-10 12:16:00 +00:00
commit 88f281b606
7 changed files with 500 additions and 26 deletions
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eo/src/MGE/eoInitVirus.h Normal file
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// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
//-----------------------------------------------------------------------------
// eoInit.h
// (c) Maarten Keijzer 2000, GeNeura Team, 2000
/*
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Contact: todos@geneura.ugr.es, http://geneura.ugr.es
Marc.Schoenauer@polytechnique.fr
mak@dhi.dk
*/
//-----------------------------------------------------------------------------
#ifndef _eoInitVirus_H
#define _eoInitVirus_H
#include <algorithm>
#include <eoOp.h>
#include <eoSTLFunctor.h>
#include <utils/eoRndGenerators.h>
#include <eoInit.h>
/**
Initializer for binary chromosome with MGE
*/
template <class FitT>
class eoInitVirus: public eoInit< eoVirus<FitT> > {
public:
eoInitVirus(unsigned _combien, eoRndGenerator<bool>& _generator)
: combien(_combien), generator(_generator) {}
virtual void operator()( eoVirus<FitT>& chrom)
{
chrom.resize(combien);
chrom.virResize(combien);
std::generate(chrom.begin(), chrom.end(), generator);
for ( unsigned i = 0; i < combien; i ++ ) {
chrom.virusBitSet(i, generator() );
}
chrom.invalidate();
}
private :
unsigned combien;
/// generic wrapper for eoFunctor (s), to make them have the function-pointer style copy semantics
eoSTLF<bool> generator;
};
#endif