diff --git a/CVSROOT/checkoutlist b/CVSROOT/checkoutlist deleted file mode 100644 index b04b3501f..000000000 --- a/CVSROOT/checkoutlist +++ /dev/null @@ -1,13 +0,0 @@ -# The "checkoutlist" file is used to support additional version controlled -# administrative files in $CVSROOT/CVSROOT, such as template files. -# -# The first entry on a line is a filename which will be checked out from -# the corresponding RCS file in the $CVSROOT/CVSROOT directory. -# The remainder of the line is an error message to use if the file cannot -# be checked out. -# -# File format: -# -# [] -# -# comment lines begin with '#' diff --git a/CVSROOT/commitinfo b/CVSROOT/commitinfo deleted file mode 100644 index b19e7b7a6..000000000 --- a/CVSROOT/commitinfo +++ /dev/null @@ -1,15 +0,0 @@ -# The "commitinfo" file is used to control pre-commit checks. -# The filter on the right is invoked with the repository and a list -# of files to check. A non-zero exit of the filter program will -# cause the commit to be aborted. -# -# The first entry on a line is a regular expression which is tested -# against the directory that the change is being committed to, relative -# to the $CVSROOT. For the first match that is found, then the remainder -# of the line is the name of the filter to run. -# -# If the repository name does not match any of the regular expressions in this -# file, the "DEFAULT" line is used, if it is specified. -# -# If the name "ALL" appears as a regular expression it is always used -# in addition to the first matching regex or "DEFAULT". diff --git a/CVSROOT/config b/CVSROOT/config deleted file mode 100644 index 8069cad5d..000000000 --- a/CVSROOT/config +++ /dev/null @@ -1,11 +0,0 @@ -# Set this to "no" if pserver shouldn't check system users/passwords -#SystemAuth=no - -# Set `PreservePermissions' to `yes' to save file status information -# in the repository. -#PreservePermissions=no - -# Set `TopLevelAdmin' to `yes' to create a CVS directory at the top -# level of the new working directory when using the `cvs checkout' -# command. -#TopLevelAdmin=no diff --git a/CVSROOT/cvswrappers b/CVSROOT/cvswrappers deleted file mode 100644 index 0accaf1b1..000000000 --- a/CVSROOT/cvswrappers +++ /dev/null @@ -1,23 +0,0 @@ -# This file affects handling of files based on their names. -# -# The -t/-f options allow one to treat directories of files -# as a single file, or to transform a file in other ways on -# its way in and out of CVS. -# -# The -m option specifies whether CVS attempts to merge files. -# -# The -k option specifies keyword expansion (e.g. -kb for binary). -# -# Format of wrapper file ($CVSROOT/CVSROOT/cvswrappers or .cvswrappers) -# -# wildcard [option value][option value]... -# -# where option is one of -# -f from cvs filter value: path to filter -# -t to cvs filter value: path to filter -# -m update methodology value: MERGE or COPY -# -k expansion mode value: b, o, kkv, &c -# -# and value is a single-quote delimited value. -# For example: -#*.gif -k 'b' diff --git a/CVSROOT/editinfo b/CVSROOT/editinfo deleted file mode 100644 index d78886c15..000000000 --- a/CVSROOT/editinfo +++ /dev/null @@ -1,21 +0,0 @@ -# The "editinfo" file is used to allow verification of logging -# information. It works best when a template (as specified in the -# rcsinfo file) is provided for the logging procedure. Given a -# template with locations for, a bug-id number, a list of people who -# reviewed the code before it can be checked in, and an external -# process to catalog the differences that were code reviewed, the -# following test can be applied to the code: -# -# Making sure that the entered bug-id number is correct. -# Validating that the code that was reviewed is indeed the code being -# checked in (using the bug-id number or a seperate review -# number to identify this particular code set.). -# -# If any of the above test failed, then the commit would be aborted. -# -# Actions such as mailing a copy of the report to each reviewer are -# better handled by an entry in the loginfo file. -# -# One thing that should be noted is the the ALL keyword is not -# supported. There can be only one entry that matches a given -# repository. diff --git a/CVSROOT/loginfo b/CVSROOT/loginfo deleted file mode 100644 index 5a59f0a54..000000000 --- a/CVSROOT/loginfo +++ /dev/null @@ -1,26 +0,0 @@ -# The "loginfo" file controls where "cvs commit" log information -# is sent. The first entry on a line is a regular expression which must match -# the directory that the change is being made to, relative to the -# $CVSROOT. If a match is found, then the remainder of the line is a filter -# program that should expect log information on its standard input. -# -# If the repository name does not match any of the regular expressions in this -# file, the "DEFAULT" line is used, if it is specified. -# -# If the name ALL appears as a regular expression it is always used -# in addition to the first matching regex or DEFAULT. -# -# You may specify a format string as part of the -# filter. The string is composed of a `%' followed -# by a single format character, or followed by a set of format -# characters surrounded by `{' and `}' as separators. The format -# characters are: -# -# s = file name -# V = old version number (pre-checkin) -# v = new version number (post-checkin) -# -# For example: -#DEFAULT (echo ""; id; echo %s; date; cat) >> $CVSROOT/CVSROOT/commitlog -# or -#DEFAULT (echo ""; id; echo %{sVv}; date; cat) >> $CVSROOT/CVSROOT/commitlog diff --git a/CVSROOT/modules b/CVSROOT/modules deleted file mode 100644 index cb9e9efc9..000000000 --- a/CVSROOT/modules +++ /dev/null @@ -1,26 +0,0 @@ -# Three different line formats are valid: -# key -a aliases... -# key [options] directory -# key [options] directory files... -# -# Where "options" are composed of: -# -i prog Run "prog" on "cvs commit" from top-level of module. -# -o prog Run "prog" on "cvs checkout" of module. -# -e prog Run "prog" on "cvs export" of module. -# -t prog Run "prog" on "cvs rtag" of module. -# -u prog Run "prog" on "cvs update" of module. -# -d dir Place module in directory "dir" instead of module name. -# -l Top-level directory only -- do not recurse. -# -# NOTE: If you change any of the "Run" options above, you'll have to -# release and re-checkout any working directories of these modules. -# -# And "directory" is a path to a directory relative to $CVSROOT. -# -# The "-a" option specifies an alias. An alias is interpreted as if -# everything on the right of the "-a" had been typed on the command line. -# -# You can encode a module within a module by using the special '&' -# character to interpose another module into the current module. This -# can be useful for creating a module that consists of many directories -# spread out over the entire source repository. diff --git a/CVSROOT/notify b/CVSROOT/notify deleted file mode 100644 index 34f0bc288..000000000 --- a/CVSROOT/notify +++ /dev/null @@ -1,12 +0,0 @@ -# The "notify" file controls where notifications from watches set by -# "cvs watch add" or "cvs edit" are sent. The first entry on a line is -# a regular expression which is tested against the directory that the -# change is being made to, relative to the $CVSROOT. If it matches, -# then the remainder of the line is a filter program that should contain -# one occurrence of %s for the user to notify, and information on its -# standard input. -# -# "ALL" or "DEFAULT" can be used in place of the regular expression. -# -# For example: -#ALL mail %s -s "CVS notification" diff --git a/CVSROOT/rcsinfo b/CVSROOT/rcsinfo deleted file mode 100644 index 49e59f4d0..000000000 --- a/CVSROOT/rcsinfo +++ /dev/null @@ -1,13 +0,0 @@ -# The "rcsinfo" file is used to control templates with which the editor -# is invoked on commit and import. -# -# The first entry on a line is a regular expression which is tested -# against the directory that the change is being made to, relative to the -# $CVSROOT. For the first match that is found, then the remainder of the -# line is the name of the file that contains the template. -# -# If the repository name does not match any of the regular expressions in this -# file, the "DEFAULT" line is used, if it is specified. -# -# If the name "ALL" appears as a regular expression it is always used -# in addition to the first matching regex or "DEFAULT". diff --git a/CVSROOT/taginfo b/CVSROOT/taginfo deleted file mode 100644 index 274a46dd5..000000000 --- a/CVSROOT/taginfo +++ /dev/null @@ -1,20 +0,0 @@ -# The "taginfo" file is used to control pre-tag checks. -# The filter on the right is invoked with the following arguments: -# -# $1 -- tagname -# $2 -- operation "add" for tag, "mov" for tag -F, and "del" for tag -d -# $3 -- repository -# $4-> file revision [file revision ...] -# -# A non-zero exit of the filter program will cause the tag to be aborted. -# -# The first entry on a line is a regular expression which is tested -# against the directory that the change is being committed to, relative -# to the $CVSROOT. For the first match that is found, then the remainder -# of the line is the name of the filter to run. -# -# If the repository name does not match any of the regular expressions in this -# file, the "DEFAULT" line is used, if it is specified. -# -# If the name "ALL" appears as a regular expression it is always used -# in addition to the first matching regex or "DEFAULT". diff --git a/CVSROOT/verifymsg b/CVSROOT/verifymsg deleted file mode 100644 index 86f747ce2..000000000 --- a/CVSROOT/verifymsg +++ /dev/null @@ -1,21 +0,0 @@ -# The "verifymsg" file is used to allow verification of logging -# information. It works best when a template (as specified in the -# rcsinfo file) is provided for the logging procedure. 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- -############################################################################### - -# Tell versions [3.59,3.63) of GNU make to not export all variables. -# Otherwise a system limit (for SysV at least) may be exceeded. -.NOEXPORT: diff --git a/eo/tutorial/html/index.html b/eo/tutorial/html/index.html deleted file mode 100644 index 00734f654..000000000 --- a/eo/tutorial/html/index.html +++ /dev/null @@ -1,199 +0,0 @@ - - - - - - Tutorial EO - - -Algorithm-Based - Component-Based -- Programming hints - EO -documentation -
-
Welcome to EO, the Evolving Objects library, -and to -  -

-EO Tutorial

- -
Version 0.92 - Jan. 5 2001
- -

The short term idea of this tutorial is to help you build -your own Evolutionary Algorithms using EO - while the long term -idea is that you will be able to contribute to EO, and ultimately write -our -EAs :-) -

- -
About this tutorial

-This tutorial can be used in 2 different ways: algorithm-based and component-based. -
    -
  • -Algorithm-Based means you start from a very -simple, ready-to-run algorithm, and gradually modify it, making -it both more powerful and more complex.
    • - -
  • -Component-Based means you start by examining -the -components of an EA one by one, down to -the level of complexity you feel comfortable with, and then build the whole -algorithm using those components you need (or the one you are mastering). -Such approach might be viewed as going through a simplified user guide, -too.
    • -
-However, it is strongly recommended -that you take some time on the first lesson of the Algorithm-Based approach -to get familiar with the basic concepts that are used throughout EO. Anyway, -as of today, December 19, the Component-Based is only very sparsely written -:-) -

-

Links and Related -documents -
    -
  • -There are of course a few (very few) programming -hints that you should know.
    • - -
  • -THe EO documentation - automatically -generated from the comments in the code - is very helpful to get an idea -of the inheritance diagrams of EO classes, -and to quickly reach some specific part of the code.
    • - -
    The top page of each class documentation is for instance the inheritance -diagram of the class, and you'll learn a lot by simply looking at it. -
  • -And, last but not least, we assume you know approximately that an Evolutionary -Algorithm looks like this, but otherwise you can try this very -brief introduction (not written yet, Jan. 2001, sorry).
    • -
- -


-

Colors and navigation: -

You will see this diagram in quite many places, as for instance at the -top of all examples - usually it will be clickable and will help you navigate -among the different parts of an EO program. See the brief -introduction to Evolutionary Computation for a detailed explanation. -

-

- -

But in the text itself, colors are important, -as they will be used throughout this tutorial to clearly mark which part -of the algorithm we are discussing. So please keep in mind that, whereas -orange -is for emphasis, -

    -
  • -Yellowish is for representation, -i.e. the choice of the genotype
    • - -
  • -Magenta is for the stochastic -operators that are representation-dependent, -i.e. initialisation and variation operators -(crossover, mutation -and the like).
    • - -
  • -Green is for the implementation of Darwinism, -i.e. the way the individuals are selected -for reproduction and survive.
    • - -
  • -Red is for evaluation, i.e. the computation -of the fitness of all individuals
    • - -
  • -Blue is for interactions of the user and the -program, as for instance choice of stopping criterion, -on-line display of nice statistics or initial -choice -of all program parameters.
    • - -
  • -Brown is for everything that is NOT part of -any of the above, i.e. random number generator, or basic C++/STL syntax -.
    • - -
  • -Note that pink will be used to describe the -syntax of compile orders (i.e. at the operating system level, see e.g. -below).
    • - -
  • -Last, but not least, all -links into EO documentation will use the Helvetica typeface, like this -line you are now reading.
    • -
- -
This tutorial is -not -
    -
  • -A course on Evolutionary Computation. You can find such things on the Internet, -maybe you can start here.
    • - -
  • -An interface that would allow you to build your Evolutionary Programs by -a few clicks; such a thing does exist, is called EASEA, -and is complementary to this tutorial as it helps the user to build some -simple EO programs from simple description. But there are things that EASEA -cannot do, and you will have to do it yourself and will need to increase -your knowledge about EO for that - hence this tutorial.
    • - -
  • -A coffee machine - though you might want to spend some time here when you're -tired of everything else, to improve your knowledge of EO slowly and gradually -rather than when you have something urgent to code :-)
    • -
- -
Before -you start -

You should of course have downloaded and installed the whole EO -library (how did you get this file if not???). -
So we'll assume that you are now in the Tutorial directory, and that -your prompt looks something like -

(myname@myhost) EOdir/Tutorial % -

so you should now type in -

make lesson1 -

and see something like -

(myname@myhost) -EOdir/Tutorial % make lesson1 -
c++ -DPACKAGE=\"eo\" -DVERSION=\"0.9.1\" --I. -I../../src -Wall -g -c FirstBitGA.cpp -
c++ -Wall -g -o FirstBitGA FirstBitGA.o -../../src/libeo.a ../../src/utils/libeoutils.a -
c++ -DPACKAGE=\"eo\" -DVERSION=\"0.9.1\" --I. -I../../src -Wall -g -c FirstRealGA.cpp -
c++ -Wall -g -o FirstRealGA FirstRealGA.o -../../src/libeo.a ../../src/utils/libeoutils.a -

and two now executable files should have appeared in the subdirectory -Lesson1, namely FirstBitGA -and FirstRealGA (see First -lesson to know more about these two ready-to-run programs). If this -doesn't work, please go back to the main EO directory and run the installation -program. -

You should also test that you can access the EO documentation in the -menu line below: you might not need to go there immediately, but just in -case you make rapid progress ... This menu bar should be on all pages of -this tutorial, allowing you to navigate easily. -

Last, but not least: EO is improving only  from the good will of -contributors. This is also true for this tutorial: If you find anything -that you think could be improved, you are welcome to e-mail -me. -

-

Enjoy! -

Algorithm-Based -- Component-Based - Programming -hints - EO -documentation
- -
-
-Marc Schoenauer
- -
Last -modified: Fri Nov 28 2000  - -