git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@482 331e1502-861f-0410-8da2-ba01fb791d7f
This commit is contained in:
atantar
parent
445f5fcb94
commit
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8 changed files with 494 additions and 30 deletions
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## miscallenous parameters
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--debug=false
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## deployment schema
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--schema=../schema.xml
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## parameters
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--inst=../../examples/tsp/benchs/eil101.tsp
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<?xml version="1.0"?>
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<schema>
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<group scheduler="0">
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<node name="0" num_workers="0">
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</node>
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<node name="1" num_workers="0">
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<runner>1</runner>
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</node>
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<node name="2" num_workers="1">
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</node>
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<node name="3" num_workers="1">
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</node>
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</group>
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</schema>
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16
trunk/paradiseo-peo/tutorial/Lesson3/CMakeLists.txt
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16
trunk/paradiseo-peo/tutorial/Lesson3/CMakeLists.txt
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######################################################################################
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### 0) Need lesson1 directory
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######################################################################################
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SET(TUTORIAL_LESSON3_DIR ${CMAKE_CURRENT_SOURCE_DIR})
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######################################################################################
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######################################################################################
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### 1) Where must cmake go now ?
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######################################################################################
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SUBDIRS(src)
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######################################################################################
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@ -4,7 +4,7 @@
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## deployment schema
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## deployment schema
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--schema=../schema.xml
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--schema=schema.xml
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## parameters
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## parameters
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@ -7,6 +7,7 @@
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<node name="1" num_workers="0">
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<node name="1" num_workers="0">
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<runner>1</runner>
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<runner>1</runner>
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<runner>2</runner>
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</node>
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</node>
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<node name="2" num_workers="1">
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<node name="2" num_workers="1">
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75
trunk/paradiseo-peo/tutorial/Lesson3/src/CMakeLists.txt
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75
trunk/paradiseo-peo/tutorial/Lesson3/src/CMakeLists.txt
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######################################################################################
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### 0) Set the compiler
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######################################################################################
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SET (CMAKE_CXX_COMPILER mpicxx)
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######################################################################################
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######################################################################################
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### 1) Include the sources
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######################################################################################
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INCLUDE_DIRECTORIES(${EO_SRC_DIR})
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INCLUDE_DIRECTORIES(${MO_SRC_DIR})
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INCLUDE_DIRECTORIES(${PEO_SRC_DIR})
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INCLUDE_DIRECTORIES(${TSP_EXAMPLE_DIR}/src)
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######################################################################################
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######################################################################################
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### 2) Specify where CMake can find the libraries (mandatory: before 3) )
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######################################################################################
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LINK_DIRECTORIES( ${EO_SRC_DIR}
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${EO_SRC_DIR}/utils
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${PEO_DIR}/build
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${TSP_EXAMPLE_DIR}/build)
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######################################################################################
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######################################################################################
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### 3) Define your target(s): just an executable here
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######################################################################################
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# no matter what is the OS, hopefully
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ADD_EXECUTABLE(tspExample main.cpp)
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ADD_DEPENDENCIES(tspExample tsp)
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ADD_DEPENDENCIES(tspExample peo)
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ADD_DEPENDENCIES(tspExample rmc_mpi)
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SET(EXECUTABLE_OUTPUT_PATH ${TUTORIAL_LESSON3_DIR}/build)
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######################################################################################
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######################################################################################
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### 4) Optionnal: define your target(s)'s version: no effect for windows
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######################################################################################
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SET(LESSON3_VERSION "1.0.beta")
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SET_TARGET_PROPERTIES(tspExample PROPERTIES VERSION "${LESSON3_VERSION}")
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######################################################################################
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######################################################################################
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### 5) Link the librairies
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######################################################################################
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TARGET_LINK_LIBRARIES(tspExample ${XML2_LIBS}) # define in CMakeLists.txt at PEO root dir
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TARGET_LINK_LIBRARIES(tspExample tsp)
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TARGET_LINK_LIBRARIES(tspExample peo)
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TARGET_LINK_LIBRARIES(tspExample rmc_mpi)
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TARGET_LINK_LIBRARIES(tspExample eo)
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TARGET_LINK_LIBRARIES(tspExample eoutils)
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######################################################################################
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160
trunk/paradiseo-peo/tutorial/Lesson3/src/main.cpp
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160
trunk/paradiseo-peo/tutorial/Lesson3/src/main.cpp
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// "main.cpp"
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// (c) OPAC Team, LIFL, January 2006
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/*
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Contact: paradiseo-help@lists.gforge.inria.fr
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*/
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#include "route.h"
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#include "route_init.h"
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#include "route_eval.h"
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#include "order_xover.h"
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#include "city_swap.h"
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#include "param.h"
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#include <paradiseo>
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#define POP_SIZE 10
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#define NUM_GEN 100
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#define CROSS_RATE 1.0
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#define MUT_RATE 0.01
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#define MIG_FREQ 10
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#define MIG_SIZE 5
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int main( int __argc, char** __argv ) {
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// initializing the ParadisEO-PEO environment
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peo :: init( __argc, __argv );
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// processing the command line specified parameters
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loadParameters( __argc, __argv );
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// init, eval operators, EA operators -------------------------------------------------------------------------------------------------------------
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RouteInit route_init; // random init object - creates random Route objects
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RouteEval full_eval; // evaluator object - offers a fitness value for a specified Route object
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OrderXover crossover; // crossover operator - creates two offsprings out of two specified parents
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CitySwap mutation; // mutation operator - randomly mutates one gene for a specified individual
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// ------------------------------------------------------------------------------------------------------------------------------------------------
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// evolutionary algorithm components --------------------------------------------------------------------------------------------------------------
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eoPop< Route > population( POP_SIZE, route_init ); // initial population for the algorithm having POP_SIZE individuals
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peoParaPopEval< Route > eaPopEval( full_eval ); // evaluator object - to be applied at each iteration on the entire population
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eoGenContinue< Route > eaCont( NUM_GEN ); // continuation criterion - the algorithm will iterate for NUM_GEN generations
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eoCheckPoint< Route > eaCheckpointContinue( eaCont ); // checkpoint object - verify at each iteration if the continuation criterion is met
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eoRankingSelect< Route > selectionStrategy; // selection strategy - applied at each iteration for selecting parent individuals
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eoSelectNumber< Route > eaSelect( selectionStrategy, POP_SIZE ); // selection object - POP_SIZE individuals are selected at each iteration
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// transform operator - includes the crossover and the mutation operators with a specified associated rate
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eoSGATransform< Route > transform( crossover, CROSS_RATE, mutation, MUT_RATE );
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peoSeqTransform< Route > eaTransform( transform ); // ParadisEO transform operator (please remark the peo prefix) - wraps an e EO transform object
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eoPlusReplacement< Route > eaReplace; // replacement strategy - for replacing the initial population with offspring individuals
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// ------------------------------------------------------------------------------------------------------------------------------------------------
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RingTopology topology;
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// migration policy and components ----------------------------------------------------------------------------------------------------------------
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eoPeriodicContinue< Route > mig_cont( MIG_FREQ ); // migration occurs periodically
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eoRandomSelect< Route > mig_select_one; // emigrants are randomly selected
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eoSelectNumber< Route > mig_select( mig_select_one, MIG_SIZE );
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eoPlusReplacement< Route > mig_replace; // immigrants replace the worse individuals
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peoSyncIslandMig< Route > mig( MIG_FREQ, mig_select, mig_replace, topology, population, population );
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//peoAsyncIslandMig< Route > mig( mig_cont, mig_select, mig_replace, topology, population, population );
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eaCheckpointContinue.add( mig );
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// ------------------------------------------------------------------------------------------------------------------------------------------------
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// ParadisEO-PEO evolutionary algorithm -----------------------------------------------------------------------------------------------------------
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peoEA< Route > eaAlg( eaCheckpointContinue, eaPopEval, eaSelect, eaTransform, eaReplace );
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mig.setOwner( eaAlg );
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eaAlg( population ); // specifying the initial population for the algorithm, to be iteratively evolved
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// ------------------------------------------------------------------------------------------------------------------------------------------------
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// evolutionary algorithm components --------------------------------------------------------------------------------------------------------------
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eoPop< Route > population2( POP_SIZE, route_init ); // initial population for the algorithm having POP_SIZE individuals
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peoParaPopEval< Route > eaPopEval2( full_eval ); // evaluator object - to be applied at each iteration on the entire population
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eoGenContinue< Route > eaCont2( NUM_GEN ); // continuation criterion - the algorithm will iterate for NUM_GEN generations
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eoCheckPoint< Route > eaCheckpointContinue2( eaCont2 ); // checkpoint object - verify at each iteration if the continuation criterion is met
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eoRankingSelect< Route > selectionStrategy2; // selection strategy - applied at each iteration for selecting parent individuals
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eoSelectNumber< Route > eaSelect2( selectionStrategy2, POP_SIZE ); // selection object - POP_SIZE individuals are selected at each iteration
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// transform operator - includes the crossover and the mutation operators with a specified associated rate
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eoSGATransform< Route > transform2( crossover, CROSS_RATE, mutation, MUT_RATE );
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peoSeqTransform< Route > eaTransform2( transform2 ); // ParadisEO transform operator (please remark the peo prefix) - wraps an e EO transform object
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eoPlusReplacement< Route > eaReplace2; // replacement strategy - for replacing the initial population with offspring individuals
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// ------------------------------------------------------------------------------------------------------------------------------------------------
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// migration policy and components ----------------------------------------------------------------------------------------------------------------
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eoPeriodicContinue< Route > mig_cont2( MIG_FREQ ); // migration occurs periodically
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eoRandomSelect< Route > mig_select_one2; // emigrants are randomly selected
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eoSelectNumber< Route > mig_select2( mig_select_one2, MIG_SIZE );
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eoPlusReplacement< Route > mig_replace2; // immigrants replace the worse individuals
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peoSyncIslandMig< Route > mig2( MIG_FREQ, mig_select2, mig_replace2, topology, population2, population2 );
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//peoAsyncIslandMig< Route > mig2( mig_cont2, mig_select2, mig_replace2, topology, population2, population2 );
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eaCheckpointContinue2.add( mig2 );
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// ------------------------------------------------------------------------------------------------------------------------------------------------
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// ParadisEO-PEO evolutionary algorithm -----------------------------------------------------------------------------------------------------------
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peoEA< Route > eaAlg2( eaCheckpointContinue2, eaPopEval2, eaSelect2, eaTransform2, eaReplace2 );
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mig2.setOwner( eaAlg2 );
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eaAlg2( population2 ); // specifying the initial population for the algorithm, to be iteratively evolved
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// ------------------------------------------------------------------------------------------------------------------------------------------------
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peo :: run( );
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peo :: finalize( );
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// shutting down the ParadisEO-PEO environment
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return 0;
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}
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@ -0,0 +1,241 @@
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# Doxyfile 1.4.7
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||||||
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#---------------------------------------------------------------------------
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# Project related configuration options
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||||||
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#---------------------------------------------------------------------------
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||||||
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PROJECT_NAME = "ParadisEO-PEO Lesson2"
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||||||
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PROJECT_NUMBER = 0.1
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||||||
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OUTPUT_DIRECTORY = ../../docs/html/lesson2
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||||||
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CREATE_SUBDIRS = NO
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||||||
|
OUTPUT_LANGUAGE = English
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||||||
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USE_WINDOWS_ENCODING = NO
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||||||
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BRIEF_MEMBER_DESC = YES
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||||||
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REPEAT_BRIEF = YES
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||||||
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ABBREVIATE_BRIEF = "The $name class" \
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||||||
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"The $name widget" \
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||||||
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"The $name file" \
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||||||
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is \
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||||||
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provides \
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||||||
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specifies \
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||||||
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contains \
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||||||
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represents \
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||||||
|
a \
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||||||
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an \
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||||||
|
the
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||||||
|
ALWAYS_DETAILED_SEC = NO
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||||||
|
INLINE_INHERITED_MEMB = NO
|
||||||
|
FULL_PATH_NAMES = NO
|
||||||
|
STRIP_FROM_PATH =
|
||||||
|
STRIP_FROM_INC_PATH =
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||||||
|
SHORT_NAMES = NO
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||||||
|
JAVADOC_AUTOBRIEF = YES
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||||||
|
MULTILINE_CPP_IS_BRIEF = NO
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||||||
|
DETAILS_AT_TOP = NO
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||||||
|
INHERIT_DOCS = YES
|
||||||
|
SEPARATE_MEMBER_PAGES = NO
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||||||
|
TAB_SIZE = 8
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||||||
|
ALIASES =
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||||||
|
OPTIMIZE_OUTPUT_FOR_C = NO
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||||||
|
OPTIMIZE_OUTPUT_JAVA = NO
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||||||
|
BUILTIN_STL_SUPPORT = NO
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||||||
|
DISTRIBUTE_GROUP_DOC = NO
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||||||
|
SUBGROUPING = YES
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||||||
|
#---------------------------------------------------------------------------
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||||||
|
# Build related configuration options
|
||||||
|
#---------------------------------------------------------------------------
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||||||
|
EXTRACT_ALL = NO
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||||||
|
EXTRACT_PRIVATE = YES
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||||||
|
EXTRACT_STATIC = YES
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||||||
|
EXTRACT_LOCAL_CLASSES = YES
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||||||
|
EXTRACT_LOCAL_METHODS = NO
|
||||||
|
HIDE_UNDOC_MEMBERS = YES
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||||||
|
HIDE_UNDOC_CLASSES = YES
|
||||||
|
HIDE_FRIEND_COMPOUNDS = NO
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||||||
|
HIDE_IN_BODY_DOCS = NO
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||||||
|
INTERNAL_DOCS = NO
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||||||
|
CASE_SENSE_NAMES = YES
|
||||||
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HIDE_SCOPE_NAMES = NO
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||||||
|
SHOW_INCLUDE_FILES = YES
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||||||
|
INLINE_INFO = YES
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||||||
|
SORT_MEMBER_DOCS = NO
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||||||
|
SORT_BRIEF_DOCS = NO
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||||||
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SORT_BY_SCOPE_NAME = NO
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||||||
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GENERATE_TODOLIST = YES
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||||||
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GENERATE_TESTLIST = YES
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||||||
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GENERATE_BUGLIST = YES
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||||||
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GENERATE_DEPRECATEDLIST= YES
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||||||
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ENABLED_SECTIONS =
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||||||
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MAX_INITIALIZER_LINES = 30
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||||||
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SHOW_USED_FILES = YES
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||||||
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SHOW_DIRECTORIES = NO
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||||||
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FILE_VERSION_FILTER =
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||||||
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#---------------------------------------------------------------------------
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||||||
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# configuration options related to warning and progress messages
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||||||
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#---------------------------------------------------------------------------
|
||||||
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QUIET = YES
|
||||||
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WARNINGS = YES
|
||||||
|
WARN_IF_UNDOCUMENTED = YES
|
||||||
|
WARN_IF_DOC_ERROR = YES
|
||||||
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WARN_NO_PARAMDOC = NO
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||||||
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WARN_FORMAT = "$file:$line: $text"
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||||||
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WARN_LOGFILE =
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||||||
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#---------------------------------------------------------------------------
|
||||||
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# configuration options related to the input files
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||||||
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#---------------------------------------------------------------------------
|
||||||
|
INPUT = .
|
||||||
|
FILE_PATTERNS = *.cpp \
|
||||||
|
*.h \
|
||||||
|
NEWS \
|
||||||
|
README
|
||||||
|
RECURSIVE = YES
|
||||||
|
EXCLUDE =
|
||||||
|
EXCLUDE_SYMLINKS = NO
|
||||||
|
EXCLUDE_PATTERNS =
|
||||||
|
EXAMPLE_PATH =
|
||||||
|
EXAMPLE_PATTERNS = *
|
||||||
|
EXAMPLE_RECURSIVE = NO
|
||||||
|
IMAGE_PATH = ../../docs/images
|
||||||
|
INPUT_FILTER =
|
||||||
|
FILTER_PATTERNS =
|
||||||
|
FILTER_SOURCE_FILES = NO
|
||||||
|
#---------------------------------------------------------------------------
|
||||||
|
# configuration options related to source browsing
|
||||||
|
#---------------------------------------------------------------------------
|
||||||
|
SOURCE_BROWSER = YES
|
||||||
|
INLINE_SOURCES = NO
|
||||||
|
STRIP_CODE_COMMENTS = YES
|
||||||
|
REFERENCED_BY_RELATION = YES
|
||||||
|
REFERENCES_RELATION = YES
|
||||||
|
REFERENCES_LINK_SOURCE = YES
|
||||||
|
USE_HTAGS = NO
|
||||||
|
VERBATIM_HEADERS = YES
|
||||||
|
#---------------------------------------------------------------------------
|
||||||
|
# configuration options related to the alphabetical class index
|
||||||
|
#---------------------------------------------------------------------------
|
||||||
|
ALPHABETICAL_INDEX = YES
|
||||||
|
COLS_IN_ALPHA_INDEX = 3
|
||||||
|
IGNORE_PREFIX = peo
|
||||||
|
#---------------------------------------------------------------------------
|
||||||
|
# configuration options related to the HTML output
|
||||||
|
#---------------------------------------------------------------------------
|
||||||
|
GENERATE_HTML = YES
|
||||||
|
HTML_OUTPUT = html
|
||||||
|
HTML_FILE_EXTENSION = .html
|
||||||
|
HTML_HEADER =
|
||||||
|
HTML_FOOTER =
|
||||||
|
HTML_STYLESHEET =
|
||||||
|
HTML_ALIGN_MEMBERS = YES
|
||||||
|
GENERATE_HTMLHELP = NO
|
||||||
|
CHM_FILE =
|
||||||
|
HHC_LOCATION =
|
||||||
|
GENERATE_CHI = NO
|
||||||
|
BINARY_TOC = NO
|
||||||
|
TOC_EXPAND = NO
|
||||||
|
DISABLE_INDEX = NO
|
||||||
|
ENUM_VALUES_PER_LINE = 4
|
||||||
|
GENERATE_TREEVIEW = YES
|
||||||
|
TREEVIEW_WIDTH = 250
|
||||||
|
#---------------------------------------------------------------------------
|
||||||
|
# configuration options related to the LaTeX output
|
||||||
|
#---------------------------------------------------------------------------
|
||||||
|
GENERATE_LATEX = YES
|
||||||
|
LATEX_OUTPUT = latex
|
||||||
|
LATEX_CMD_NAME = latex
|
||||||
|
MAKEINDEX_CMD_NAME = makeindex
|
||||||
|
COMPACT_LATEX = NO
|
||||||
|
PAPER_TYPE = a4wide
|
||||||
|
EXTRA_PACKAGES =
|
||||||
|
LATEX_HEADER =
|
||||||
|
PDF_HYPERLINKS = YES
|
||||||
|
USE_PDFLATEX = YES
|
||||||
|
LATEX_BATCHMODE = NO
|
||||||
|
LATEX_HIDE_INDICES = NO
|
||||||
|
#---------------------------------------------------------------------------
|
||||||
|
# configuration options related to the RTF output
|
||||||
|
#---------------------------------------------------------------------------
|
||||||
|
GENERATE_RTF = NO
|
||||||
|
RTF_OUTPUT = rtf
|
||||||
|
COMPACT_RTF = NO
|
||||||
|
RTF_HYPERLINKS = NO
|
||||||
|
RTF_STYLESHEET_FILE =
|
||||||
|
RTF_EXTENSIONS_FILE =
|
||||||
|
#---------------------------------------------------------------------------
|
||||||
|
# configuration options related to the man page output
|
||||||
|
#---------------------------------------------------------------------------
|
||||||
|
GENERATE_MAN = YES
|
||||||
|
MAN_OUTPUT = man
|
||||||
|
MAN_EXTENSION = .3
|
||||||
|
MAN_LINKS = NO
|
||||||
|
#---------------------------------------------------------------------------
|
||||||
|
# configuration options related to the XML output
|
||||||
|
#---------------------------------------------------------------------------
|
||||||
|
GENERATE_XML = NO
|
||||||
|
XML_OUTPUT = xml
|
||||||
|
XML_SCHEMA =
|
||||||
|
XML_DTD =
|
||||||
|
XML_PROGRAMLISTING = YES
|
||||||
|
#---------------------------------------------------------------------------
|
||||||
|
# configuration options for the AutoGen Definitions output
|
||||||
|
#---------------------------------------------------------------------------
|
||||||
|
GENERATE_AUTOGEN_DEF = NO
|
||||||
|
#---------------------------------------------------------------------------
|
||||||
|
# configuration options related to the Perl module output
|
||||||
|
#---------------------------------------------------------------------------
|
||||||
|
GENERATE_PERLMOD = NO
|
||||||
|
PERLMOD_LATEX = NO
|
||||||
|
PERLMOD_PRETTY = YES
|
||||||
|
PERLMOD_MAKEVAR_PREFIX =
|
||||||
|
#---------------------------------------------------------------------------
|
||||||
|
# Configuration options related to the preprocessor
|
||||||
|
#---------------------------------------------------------------------------
|
||||||
|
ENABLE_PREPROCESSING = YES
|
||||||
|
MACRO_EXPANSION = NO
|
||||||
|
EXPAND_ONLY_PREDEF = NO
|
||||||
|
SEARCH_INCLUDES = YES
|
||||||
|
INCLUDE_PATH =
|
||||||
|
INCLUDE_FILE_PATTERNS =
|
||||||
|
PREDEFINED =
|
||||||
|
EXPAND_AS_DEFINED =
|
||||||
|
SKIP_FUNCTION_MACROS = YES
|
||||||
|
#---------------------------------------------------------------------------
|
||||||
|
# Configuration::additions related to external references
|
||||||
|
#---------------------------------------------------------------------------
|
||||||
|
TAGFILES = ../../../paradiseo-mo/docs/eo.doxytag=../../../../../paradiseo-mo/docs/html \
|
||||||
|
../../../paradiseo-mo/docs/mo.doxytag=../../../../../paradiseo-mo/docs/html \
|
||||||
|
../../docs/paradiseo-peo.doxytag=../../ \
|
||||||
|
../shared/paradiseo-peo-lsn-shared.doxytag=../../lsnshared/html
|
||||||
|
GENERATE_TAGFILE = ../../docs/paradiseo-peo-lsn.doxytag
|
||||||
|
ALLEXTERNALS = NO
|
||||||
|
EXTERNAL_GROUPS = YES
|
||||||
|
PERL_PATH = /usr/bin/perl
|
||||||
|
#---------------------------------------------------------------------------
|
||||||
|
# Configuration options related to the dot tool
|
||||||
|
#---------------------------------------------------------------------------
|
||||||
|
CLASS_DIAGRAMS = YES
|
||||||
|
HIDE_UNDOC_RELATIONS = YES
|
||||||
|
HAVE_DOT = NO
|
||||||
|
CLASS_GRAPH = YES
|
||||||
|
COLLABORATION_GRAPH = YES
|
||||||
|
GROUP_GRAPHS = YES
|
||||||
|
UML_LOOK = NO
|
||||||
|
TEMPLATE_RELATIONS = NO
|
||||||
|
INCLUDE_GRAPH = YES
|
||||||
|
INCLUDED_BY_GRAPH = YES
|
||||||
|
CALL_GRAPH = NO
|
||||||
|
CALLER_GRAPH = NO
|
||||||
|
GRAPHICAL_HIERARCHY = YES
|
||||||
|
DIRECTORY_GRAPH = YES
|
||||||
|
DOT_IMAGE_FORMAT = png
|
||||||
|
DOT_PATH =
|
||||||
|
DOTFILE_DIRS =
|
||||||
|
MAX_DOT_GRAPH_WIDTH = 1024
|
||||||
|
MAX_DOT_GRAPH_HEIGHT = 1024
|
||||||
|
MAX_DOT_GRAPH_DEPTH = 0
|
||||||
|
DOT_TRANSPARENT = NO
|
||||||
|
DOT_MULTI_TARGETS = NO
|
||||||
|
GENERATE_LEGEND = YES
|
||||||
|
DOT_CLEANUP = YES
|
||||||
|
#---------------------------------------------------------------------------
|
||||||
|
# Configuration::additions related to the search engine
|
||||||
|
#---------------------------------------------------------------------------
|
||||||
|
SEARCHENGINE = YES
|
||||||
Loading…
Add table
Add a link
Reference in a new issue