Add experimental scripts for irace/fastga

eo/contrib/irace/expe/beta/planF/r_iF.sh

@@ -0,0 +1,37 @@
+#!/bin/bash
+#run once each problem
+dir=$1
+run=$2
+budget_irace=$3
+buckets=$4
+myhome=$5
+
+echo "---------------start JOB ${run} $(date --iso-8601=seconds)"
+. /etc/profile.d/modules.sh
+export MODULEPATH=${MODULEPATH}${MODULEPATH:+:}/opt/dev/Modules/Anaconda:/opt/dev/Modules/Compilers:/opt/dev/Modules/Frameworks:/opt/dev/Modules/Libraries:/opt/dev/Modules/Tools:/opt/dev/Modules/IDEs:/opt/dev/Modules/MPI
+module load LLVM/clang-llvm-10.0
+module load R
+
+cp -r ${myhome}/R .
+cp -r ${myhome}/irace_files_pF .
+#cp -r /scratchbeta/zhenga/irace_files .
+#chmod u+x ./fastga
+outdir="${run}_$(date --iso-8601=seconds)_results_irace"
+for pb in $(seq 0 18) ; do
+    echo "Problem ${pb}... "
+    res="results_problem_${pb}"
+    mkdir -p ${dir}/${outdir}/${res}
+    # Fore some reason, irace absolutely need those files...
+    cp ${myhome}/code/paradiseo/eo/contrib/irace/release/fastga  ${dir}/${outdir}/${res}
+    cat ./irace_files_pF/example.scen | sed "s%\".%\"${dir}/${outdir}/${res}%g" |  sed "s/maxExperiments = 0/maxExperiments=${budget_irace}/" > ${dir}/${outdir}/${res}/example.scen
+    cp ./irace_files_pF/default.instances ${dir}/${outdir}/${res}
+    cp ./irace_files_pF/fastga.param ${dir}/${outdir}/${res}
+    cp ./irace_files_pF/forbidden.txt ${dir}/${outdir}/${res}
+    cat ./irace_files_pF/target-runner | sed "s/--problem=0/--problem=${p}/" |  sed "s/buckets=0/buckets=${buckets}/" > ${dir}/${outdir}/${res}/target-runner
+    chmod u+x ${dir}/${outdir}/${res}/target-runner
+
+    echo "---start $(date)"
+    time -p ./R/x86_64-pc-linux-gnu-library/3.6/irace/bin/irace --scenario ${dir}/${outdir}/${res}/example.scen  > ${dir}/${outdir}/${res}/irace.log 
+    echo "---end $(date)"
+done
+echo "end JOB ${run} $(date --iso-8601=seconds)---------------"

eo/contrib/irace/expe/beta/planF/riaF.sh

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+#!/bin/bash
+
+date -Iseconds
+echo "STARTS"
+myhome=$1
+scratchpath=$2
+#dir=${HOME}/plan2/${name}
+mexp=$3 #budget irace
+mevals=$4 #budget fastga
+name="dataF_maxExp=${mexp}_maxEv=${mevals}_$(date --iso-8601=seconds)"
+dir=${scratchpath}/dataFAR/dataF/${name}
+mkdir -p ${dir}
+
+for r in $(seq 2); do
+    echo "Run $r/15";
+    #date -Iseconds 
+    #cmd="qsub -N irace_${runs}_${buckets}" -q beta -l select=1:ncpus=1 -l walltime=00:04:00 --${HOME}/run_irace.sh ${dir}
+    cmd="qsub -N iraceF_${mevals}_run=${r} -q beta -l select=1:ncpus=1 -l walltime=00:30:00 -- ${scratchpath}/planF/r_iF.sh ${dir} ${r} ${mexp} ${mevals} ${myhome}"
+    #time -p bash ${HOME}/plan2/run_irace2.sh ${dir} ${r} &> ${dir}/erreur_${r}.txt
+    #bash ${HOME}/test/r_i.sh
+    echo $cmd
+    $cmd
+    #date -Iseconds
+done
+
+#echo "DONE"
+#date -Iseconds
+#echo $(pwd)