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Add experimental scripts for irace/fastga

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This commit is contained in:
Alix ZHENG 2021-08-30 09:44:06 +02:00
commit 6febf4cceb
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34
eo/contrib/irace/expe/beta/planA/r_iA.sh Executable file
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#!/bin/bash
#run once each problem
echo "-------------------------Start the JOB : $(date --iso-8601=seconds)"
. /etc/profile.d/modules.sh
export MODULEPATH=${MODULEPATH}${MODULEPATH:+:}/opt/dev/Modules/Anaconda:/opt/dev/Modules/Compilers:/opt/dev/Modules/Frameworks:/opt/dev/Modules/Libraries:/opt/dev/Modules/Tools:/opt/dev/Modules/IDEs:/opt/dev/Modules/MPI
module load LLVM/clang-llvm-10.0
module load R
dir=$1
run=$2
budget_irace=$3
buckets=$4
myhome=$5
cp -r ${myhome}/R .
cp -r ${myhome}/irace_files_pA .
#cp -r /scratchbeta/zhenga/irace_files .
#chmod u+x ./fastga
outdir="${run}_$(date --iso-8601=seconds)_results_irace"
rundir=${dir}/${outdir}
mkdir -p ${rundir}
# Fore some reason, irace absolutely need those files...
cp ${myhome}/code/paradiseo/eo/contrib/irace/release/fastga ${rundir}
cat ./irace_files_pA/example.scen | sed "s%\".%\"${rundir}%g" | sed "s/maxExperiments = 0/maxExperiments=${budget_irace}/" > ${rundir}/example.scen
cp ./irace_files_pA/default.instances ${rundir}
cp ./irace_files_pA/fastga.param ${rundir}
cp ./irace_files_pA/forbidden.txt ${rundir}
cat ./irace_files_pA/target-runner | sed "s/buckets=0/buckets=${buckets}/" > ${rundir}/target-runner
chmod u+x ${rundir}/target-runner
echo "---start $(date)"
time -p ./R/x86_64-pc-linux-gnu-library/3.6/irace/bin/irace --scenario ${rundir}/example.scen > ${rundir}/irace.log
echo "---end $(date)"
echo "End the JOB : $(date --iso-8601=seconds)------------------------------"

25
eo/contrib/irace/expe/beta/planA/riaA.sh Executable file
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#!/bin/bashi
myhome=$1
scratchpath=$2
mexp=$3
mevals=$4
date -Iseconds
echo "STARTS"
dir=${scratchpath}/dataFAR/dataA
#dir=${HOME}/plan4/${name}
#cat ${HOME}/irace_files_pA/example.scen |sed "s/maxExperiments = 0/maxExperiments = ${mexp}/" > ${HOME}/irace_files_pA/example.scen
mkdir -p ${dir}
outdir="${dir}/dataA_maxExp=${mexp}_maxEv=${mevals}_$(date --iso-8601=seconds)"
mkdir -p ${outdir}
for r in $(seq 2); do
echo "Run $r/15";
cmd="qsub -N iraceA_maxEv_${r} -q beta -l select=1:ncpus=1 -l walltime=00:30:00 -- ${scratchpath}/planA/r_iA.sh ${outdir} ${r} ${mexp} ${mevals} ${myhome}"
#cmd="bash ./r_iA_buckets.sh ${outdir} ${r} ${mexp} ${mevals}"
echo $cmd
time -p $cmd
done
echo "DONE"
#cat ${HOME}/irace_files_pA/example.scen |sed "s/maxExperiments = ${mexp}/maxExperiments = 0/" > ${HOME}/irace_files_pA/example.scen
date -Iseconds