nojhan/paradiseo
1
0
Fork 0
Code Issues Pull requests Projects Releases Packages Wiki Activity

Adding lesson5 for peo

Browse source 
git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@743 331e1502-861f-0410-8da2-ba01fb791d7f
This commit is contained in:
canape 2007-10-23 13:41:33 +00:00
commit 6fd9843fa0
7 changed files with 533 additions and 1 deletions
Download patch file Download diff file Expand all files Collapse all files

1
trunk/paradiseo-peo/src/peo.h
View file

@ -344,5 +344,6 @@
#include "peoEvalFuncPSO.h"
#include "peoPSOSelect.h"
#include "peoPSOReplacement.h"
#include "peoPSOVelocity.h"
#endif

2
trunk/paradiseo-peo/tutorial/CMakeLists.txt
View file

@ -11,6 +11,6 @@ SET(TSP_BINARY_DIR ${ParadisEO-PEO_BINARY_DIR}/tutorial/examples/tsp)
### 2) Where must cmake go now ?
######################################################################################
SUBDIRS(examples Lesson1 Lesson2 Lesson3 Lesson4 Walkthrough)
SUBDIRS(examples Lesson1 Lesson2 Lesson3 Lesson4 Lesson5 Walkthrough)
######################################################################################

98
trunk/paradiseo-peo/tutorial/Lesson5/CMakeLists.txt Normal file
View file

@ -0,0 +1,98 @@
######################################################################################
### 0) Set the compiler and define targets to easily run the lessons
######################################################################################
SET (CMAKE_CXX_COMPILER mpicxx)
ADD_CUSTOM_TARGET(install DEPENDS ${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson5/lesson.param ${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson5/schema.xml)
ADD_CUSTOM_COMMAND(
TARGET install
POST_BUILD
COMMAND ${CMAKE_COMMAND}
ARGS -E copy_if_different
${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson5/lesson.param
${ParadisEO-PEO_BINARY_DIR}/tutorial/Lesson5)
ADD_CUSTOM_COMMAND(
TARGET install
POST_BUILD
COMMAND ${CMAKE_COMMAND}
ARGS -E copy_if_different
${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson5/schema.xml
${ParadisEO-PEO_BINARY_DIR}/tutorial/Lesson5)
######################################################################################
######################################################################################
### 1) Include the sources
######################################################################################
INCLUDE_DIRECTORIES(${EO_SRC_DIR}/src ${MO_SRC_DIR}/src ${ParadisEO-PEO_SOURCE_DIR}/src)
######################################################################################
######################################################################################
### 2) Specify where CMake can find the libraries
######################################################################################
IF(NOT WIN32 OR CYGWIN)
LINK_DIRECTORIES(${EO_BIN_DIR}/lib ${ParadisEO-PEO_BINARY_DIR}/lib)
ENDIF(NOT WIN32 OR CYGWIN)
# especially for Visual Studio
IF(WIN32 AND NOT CYGWIN)
LINK_DIRECTORIES(${EO_BIN_DIR}\\lib\\${CMAKE_BUILD_TYPE} ${ParadisEO-PEO_BINARY_DIR}\\lib\\${CMAKE_BUILD_TYPE})
ENDIF(WIN32 AND NOT CYGWIN)
######################################################################################
######################################################################################
### 3) Define your target(s): just an executable here
######################################################################################
ADD_EXECUTABLE(psoExample main.cpp)
ADD_DEPENDENCIES(psoExample peo rmc_mpi)
######################################################################################
######################################################################################
### 4) Optionnal: define properties
######################################################################################
SET(LESSON4_VERSION ${GLOBAL_VERSION})
SET_TARGET_PROPERTIES(psoExample PROPERTIES VERSION "${LESSON4_VERSION}")
######################################################################################
######################################################################################
### 5) Link the librairies
######################################################################################
TARGET_LINK_LIBRARIES(psoExample ${XML2_LIBS} peo rmc_mpi eo eoutils)
######################################################################################
######################################################################################
### 6) Windows advanced config - especially for Microsoft Visual Studio 8
######################################################################################
IF(CMAKE_CXX_COMPILER MATCHES cl)
IF(NOT WITH_SHARED_LIBS)
IF(CMAKE_GENERATOR STREQUAL "Visual Studio 8 2005")
SET(CMAKE_CXX_FLAGS "/nologo /W3 /Gy")
SET(CMAKE_CXX_FLAGS_DEBUG "/MTd /Z7 /Od")
SET(CMAKE_CXX_FLAGS_RELEASE "/MT /O2")
SET(CMAKE_CXX_FLAGS_MINSIZEREL "/MT /O2")
SET(CMAKE_CXX_FLAGS_RELWITHDEBINFO "/MTd /Z7 /Od")
SET(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} /SUBSYSTEM:CONSOLE")
ENDIF(CMAKE_GENERATOR STREQUAL "Visual Studio 8 2005")
ENDIF(NOT WITH_SHARED_LIBS)
ENDIF(CMAKE_CXX_COMPILER MATCHES cl)
######################################################################################

7
trunk/paradiseo-peo/tutorial/Lesson5/lesson.param Normal file
View file

@ -0,0 +1,7 @@
## miscallenous parameters
--debug=false
## deployment schema
--schema=schema.xml

166
trunk/paradiseo-peo/tutorial/Lesson5/main.cpp Normal file
View file

@ -0,0 +1,166 @@
/*
* <main.cpp>
* Copyright (C) DOLPHIN Project-Team, INRIA Futurs, 2006-2007
* (C) OPAC Team, LIFL, 2002-2007
*
* Clive Canape
*
* This software is governed by the CeCILL license under French law and
* abiding by the rules of distribution of free software. You can use,
* modify and/ or redistribute the software under the terms of the CeCILL
* license as circulated by CEA, CNRS and INRIA at the following URL
* "http://www.cecill.info".
*
* As a counterpart to the access to the source code and rights to copy,
* modify and redistribute granted by the license, users are provided only
* with a limited warranty and the software's author, the holder of the
* economic rights, and the successive licensors have only limited liability.
*
* In this respect, the user's attention is drawn to the risks associated
* with loading, using, modifying and/or developing or reproducing the
* software by the user in light of its specific status of free software,
* that may mean that it is complicated to manipulate, and that also
* therefore means that it is reserved for developers and experienced
* professionals having in-depth computer knowledge. Users are therefore
* encouraged to load and test the software's suitability as regards their
* requirements in conditions enabling the security of their systems and/or
* data to be ensured and, more generally, to use and operate it in the
* same conditions as regards security.
* The fact that you are presently reading this means that you have had
* knowledge of the CeCILL license and that you accept its terms.
*
* ParadisEO WebSite : http://paradiseo.gforge.inria.fr
* Contact: paradiseo-help@lists.gforge.inria.fr
* clive.canape@inria.fr
*/
#include <peo>
// You can choose : a replacement or an affectation on the velocity
#define REPLAC
typedef eoRealParticle < double >Indi;
//Evaluation function
double f (const Indi & _indi)
{
//Levy function f* = -21.502356 x*=(1,1,1,-9.752356 ) for vector size = 4
const double PI = 4.0 * atan(1.0);
double sum=0.;
for (unsigned i = 0; i < _indi.size()-1; i++)
sum+=pow((_indi[i]-1),2)*(1+pow(sin(3*PI*_indi[i+1]),2));
sum+=pow(sin(3*PI*_indi[0]),2);
sum+=(_indi[_indi.size()-1]-1)*(1+pow(sin(2*PI*_indi[_indi.size()-1]),2));
return (-sum);
}
int main (int __argc, char *__argv[])
{
//Initialization
peo :: init( __argc, __argv );
//Parameters
const unsigned int MIG_FREQ = 10; // 1 or 2 for peoPSOVelocity ...
const unsigned int VEC_SIZE = 4;
const unsigned int POP_SIZE = 10;
const unsigned int NEIGHBORHOOD_SIZE= 5;
const unsigned int MAX_GEN = 100;
const double INIT_POSITION_MIN = -10.0;
const double INIT_POSITION_MAX = 1.0;
const double INIT_VELOCITY_MIN = -1;
const double INIT_VELOCITY_MAX = 1;
const double C1 = 1;
const double C2 = 0.5;
// c3 is used to calculate of an affectation on the velocity
const double C3 = 2;
rng.reseed (time(0));
peoEvalFuncPSO<Indi, double, const Indi& > plainEval(f);
eoUniformGenerator < double >uGen (INIT_POSITION_MIN, INIT_POSITION_MAX);
eoInitFixedLength < Indi > random (VEC_SIZE, uGen);
eoUniformGenerator < double >sGen (INIT_VELOCITY_MIN, INIT_VELOCITY_MAX);
eoVelocityInitFixedLength < Indi > veloRandom (VEC_SIZE, sGen);
eoFirstIsBestInit < Indi > localInit;
eoRealVectorBounds bndsFlight(VEC_SIZE,INIT_POSITION_MIN,INIT_POSITION_MAX);
eoStandardFlight < Indi > flight(bndsFlight);
eoEvalFuncCounter < Indi > evalSeq (plainEval);
peoParaPopEval< Indi > eval(plainEval);
eoPop < Indi > pop;
pop.append (POP_SIZE, random);
apply(evalSeq, pop);
apply < Indi > (veloRandom, pop);
apply < Indi > (localInit, pop);
eoLinearTopology<Indi> topology(NEIGHBORHOOD_SIZE);
topology.setup(pop);
eoRealVectorBounds bnds(VEC_SIZE,INIT_VELOCITY_MIN,INIT_VELOCITY_MAX);
eoStandardVelocity < Indi > velocity (topology,C1,C2,bnds);
eoGenContinue < Indi > genContPara (MAX_GEN);
eoCheckPoint<Indi> checkpoint(genContPara);
RingTopology topologyMig;
/*******************************************************************/
eoPeriodicContinue< Indi > mig_cont( MIG_FREQ );
peoPSOSelect<Indi> mig_selec(topology);
eoSelectNumber< Indi > mig_select(mig_selec);
#ifndef REPLAC
peoPSOVelocity<Indi> mig_replace(C3,velocity);
#else
peoPSOReplacement<Indi> mig_replace;
#endif
/*****************************************************************/
peoEvalFuncPSO<Indi, double, const Indi& > plainEval2(f);
eoUniformGenerator < double >uGen2 (INIT_POSITION_MIN, INIT_POSITION_MAX);
eoInitFixedLength < Indi > random2 (VEC_SIZE, uGen);
eoUniformGenerator < double >sGen2 (INIT_VELOCITY_MIN, INIT_VELOCITY_MAX);
eoVelocityInitFixedLength < Indi > veloRandom2 (VEC_SIZE, sGen2);
eoFirstIsBestInit < Indi > localInit2;
eoRealVectorBounds bndsFlight2(VEC_SIZE,INIT_POSITION_MIN,INIT_POSITION_MAX);
eoStandardFlight < Indi > flight2(bndsFlight2);
eoEvalFuncCounter < Indi > evalSeq2 (plainEval2);
peoParaPopEval< Indi > eval2(plainEval2);
eoPop < Indi > pop2;
pop2.append (POP_SIZE, random2);
apply(evalSeq2, pop2);
apply < Indi > (veloRandom2, pop2);
apply < Indi > (localInit2, pop2);
eoLinearTopology<Indi> topology2(NEIGHBORHOOD_SIZE);
topology2.setup(pop2);
eoRealVectorBounds bnds2(VEC_SIZE,INIT_VELOCITY_MIN,INIT_VELOCITY_MAX);
eoStandardVelocity < Indi > velocity2 (topology2,C1,C2,bnds2);
eoGenContinue < Indi > genContPara2 (MAX_GEN);
eoCheckPoint<Indi> checkpoint2(genContPara2);
/*******************************************************************/
eoPeriodicContinue< Indi > mig_cont2( MIG_FREQ );
peoPSOSelect<Indi> mig_selec2(topology2);
eoSelectNumber< Indi > mig_select2(mig_selec2);
#ifndef REPLAC
peoPSOVelocity<Indi> mig_replace2(C3,velocity2);
#else
peoPSOReplacement<Indi> mig_replace2;
#endif
/*******************************************************************/
peoAsyncIslandMig< Indi > mig( mig_cont, mig_select, mig_replace, topologyMig, pop, pop2);
checkpoint.add( mig );
peoAsyncIslandMig< Indi > mig2( mig_cont2, mig_select2, mig_replace2, topologyMig, pop2, pop);
checkpoint.add( mig2 );
peoPSO < Indi > psa(checkpoint, eval, velocity, flight);
mig.setOwner( psa );
psa(pop);
peoPSO < Indi > psa2(checkpoint2, eval2, velocity2, flight2);
mig2.setOwner( psa2 );
psa2(pop2);
peo :: run();
peo :: finalize();
if(getNodeRank()==1)
{
std::cout << "Population 1 :\n" << pop << std::endl;
std::cout << "Population 2 :\n" << pop2 << std::endl;
}
}

241
trunk/paradiseo-peo/tutorial/Lesson5/paradiseo-peo.lsn.doxyfile Normal file
View file

@ -0,0 +1,241 @@
# Doxyfile 1.4.7
#---------------------------------------------------------------------------
# Project related configuration options
#---------------------------------------------------------------------------
PROJECT_NAME = "ParadisEO-PEO Lesson5"
PROJECT_NUMBER = 0.1
OUTPUT_DIRECTORY = ../../../doc/html/lesson5
CREATE_SUBDIRS = NO
OUTPUT_LANGUAGE = English
USE_WINDOWS_ENCODING = NO
BRIEF_MEMBER_DESC = YES
REPEAT_BRIEF = YES
ABBREVIATE_BRIEF = "The $name class" \
"The $name widget" \
"The $name file" \
is \
provides \
specifies \
contains \
represents \
a \
an \
the
ALWAYS_DETAILED_SEC = NO
INLINE_INHERITED_MEMB = NO
FULL_PATH_NAMES = NO
STRIP_FROM_PATH =
STRIP_FROM_INC_PATH =
SHORT_NAMES = NO
JAVADOC_AUTOBRIEF = YES
MULTILINE_CPP_IS_BRIEF = NO
DETAILS_AT_TOP = NO
INHERIT_DOCS = YES
SEPARATE_MEMBER_PAGES = NO
TAB_SIZE = 8
ALIASES =
OPTIMIZE_OUTPUT_FOR_C = NO
OPTIMIZE_OUTPUT_JAVA = NO
BUILTIN_STL_SUPPORT = NO
DISTRIBUTE_GROUP_DOC = NO
SUBGROUPING = YES
#---------------------------------------------------------------------------
# Build related configuration options
#---------------------------------------------------------------------------
EXTRACT_ALL = NO
EXTRACT_PRIVATE = YES
EXTRACT_STATIC = YES
EXTRACT_LOCAL_CLASSES = YES
EXTRACT_LOCAL_METHODS = NO
HIDE_UNDOC_MEMBERS = YES
HIDE_UNDOC_CLASSES = YES
HIDE_FRIEND_COMPOUNDS = NO
HIDE_IN_BODY_DOCS = NO
INTERNAL_DOCS = NO
CASE_SENSE_NAMES = YES
HIDE_SCOPE_NAMES = NO
SHOW_INCLUDE_FILES = YES
INLINE_INFO = YES
SORT_MEMBER_DOCS = NO
SORT_BRIEF_DOCS = NO
SORT_BY_SCOPE_NAME = NO
GENERATE_TODOLIST = YES
GENERATE_TESTLIST = YES
GENERATE_BUGLIST = YES
GENERATE_DEPRECATEDLIST= YES
ENABLED_SECTIONS =
MAX_INITIALIZER_LINES = 30
SHOW_USED_FILES = YES
SHOW_DIRECTORIES = NO
FILE_VERSION_FILTER =
#---------------------------------------------------------------------------
# configuration options related to warning and progress messages
#---------------------------------------------------------------------------
QUIET = YES
WARNINGS = YES
WARN_IF_UNDOCUMENTED = YES
WARN_IF_DOC_ERROR = YES
WARN_NO_PARAMDOC = NO
WARN_FORMAT = "$file:$line: $text"
WARN_LOGFILE =
#---------------------------------------------------------------------------
# configuration options related to the input files
#---------------------------------------------------------------------------
INPUT = .
FILE_PATTERNS = *.cpp \
*.h \
NEWS \
README
RECURSIVE = YES
EXCLUDE =
EXCLUDE_SYMLINKS = NO
EXCLUDE_PATTERNS =
EXAMPLE_PATH =
EXAMPLE_PATTERNS = *
EXAMPLE_RECURSIVE = NO
IMAGE_PATH = ../../docs/images
INPUT_FILTER =
FILTER_PATTERNS =
FILTER_SOURCE_FILES = NO
#---------------------------------------------------------------------------
# configuration options related to source browsing
#---------------------------------------------------------------------------
SOURCE_BROWSER = YES
INLINE_SOURCES = NO
STRIP_CODE_COMMENTS = YES
REFERENCED_BY_RELATION = YES
REFERENCES_RELATION = YES
REFERENCES_LINK_SOURCE = YES
USE_HTAGS = NO
VERBATIM_HEADERS = YES
#---------------------------------------------------------------------------
# configuration options related to the alphabetical class index
#---------------------------------------------------------------------------
ALPHABETICAL_INDEX = YES
COLS_IN_ALPHA_INDEX = 3
IGNORE_PREFIX = peo
#---------------------------------------------------------------------------
# configuration options related to the HTML output
#---------------------------------------------------------------------------
GENERATE_HTML = YES
HTML_OUTPUT = html
HTML_FILE_EXTENSION = .html
HTML_HEADER =
HTML_FOOTER =
HTML_STYLESHEET =
HTML_ALIGN_MEMBERS = YES
GENERATE_HTMLHELP = NO
CHM_FILE =
HHC_LOCATION =
GENERATE_CHI = NO
BINARY_TOC = NO
TOC_EXPAND = NO
DISABLE_INDEX = NO
ENUM_VALUES_PER_LINE = 4
GENERATE_TREEVIEW = YES
TREEVIEW_WIDTH = 250
#---------------------------------------------------------------------------
# configuration options related to the LaTeX output
#---------------------------------------------------------------------------
GENERATE_LATEX = YES
LATEX_OUTPUT = latex
LATEX_CMD_NAME = latex
MAKEINDEX_CMD_NAME = makeindex
COMPACT_LATEX = NO
PAPER_TYPE = a4wide
EXTRA_PACKAGES =
LATEX_HEADER =
PDF_HYPERLINKS = YES
USE_PDFLATEX = YES
LATEX_BATCHMODE = NO
LATEX_HIDE_INDICES = NO
#---------------------------------------------------------------------------
# configuration options related to the RTF output
#---------------------------------------------------------------------------
GENERATE_RTF = NO
RTF_OUTPUT = rtf
COMPACT_RTF = NO
RTF_HYPERLINKS = NO
RTF_STYLESHEET_FILE =
RTF_EXTENSIONS_FILE =
#---------------------------------------------------------------------------
# configuration options related to the man page output
#---------------------------------------------------------------------------
GENERATE_MAN = YES
MAN_OUTPUT = man
MAN_EXTENSION = .3
MAN_LINKS = NO
#---------------------------------------------------------------------------
# configuration options related to the XML output
#---------------------------------------------------------------------------
GENERATE_XML = NO
XML_OUTPUT = xml
XML_SCHEMA =
XML_DTD =
XML_PROGRAMLISTING = YES
#---------------------------------------------------------------------------
# configuration options for the AutoGen Definitions output
#---------------------------------------------------------------------------
GENERATE_AUTOGEN_DEF = NO
#---------------------------------------------------------------------------
# configuration options related to the Perl module output
#---------------------------------------------------------------------------
GENERATE_PERLMOD = NO
PERLMOD_LATEX = NO
PERLMOD_PRETTY = YES
PERLMOD_MAKEVAR_PREFIX =
#---------------------------------------------------------------------------
# Configuration options related to the preprocessor
#---------------------------------------------------------------------------
ENABLE_PREPROCESSING = YES
MACRO_EXPANSION = NO
EXPAND_ONLY_PREDEF = NO
SEARCH_INCLUDES = YES
INCLUDE_PATH =
INCLUDE_FILE_PATTERNS =
PREDEFINED =
EXPAND_AS_DEFINED =
SKIP_FUNCTION_MACROS = YES
#---------------------------------------------------------------------------
# Configuration::additions related to external references
#---------------------------------------------------------------------------
TAGFILES = ../../../paradiseo-mo/docs/eo.doxytag=../../../../../paradiseo-mo/docs/html \
../../../paradiseo-mo/docs/mo.doxytag=../../../../../paradiseo-mo/docs/html \
../../docs/paradiseo-peo.doxytag=../../ \
../shared/paradiseo-peo-lsn-shared.doxytag=../../lsnshared/html
GENERATE_TAGFILE = ../../docs/paradiseo-peo-lsn.doxytag
ALLEXTERNALS = NO
EXTERNAL_GROUPS = YES
PERL_PATH = /usr/bin/perl
#---------------------------------------------------------------------------
# Configuration options related to the dot tool
#---------------------------------------------------------------------------
CLASS_DIAGRAMS = YES
HIDE_UNDOC_RELATIONS = YES
HAVE_DOT = NO
CLASS_GRAPH = YES
COLLABORATION_GRAPH = YES
GROUP_GRAPHS = YES
UML_LOOK = NO
TEMPLATE_RELATIONS = NO
INCLUDE_GRAPH = YES
INCLUDED_BY_GRAPH = YES
CALL_GRAPH = NO
CALLER_GRAPH = NO
GRAPHICAL_HIERARCHY = YES
DIRECTORY_GRAPH = YES
DOT_IMAGE_FORMAT = png
DOT_PATH =
DOTFILE_DIRS =
MAX_DOT_GRAPH_WIDTH = 1024
MAX_DOT_GRAPH_HEIGHT = 1024
MAX_DOT_GRAPH_DEPTH = 0
DOT_TRANSPARENT = NO
DOT_MULTI_TARGETS = NO
GENERATE_LEGEND = YES
DOT_CLEANUP = YES
#---------------------------------------------------------------------------
# Configuration::additions related to the search engine
#---------------------------------------------------------------------------
SEARCHENGINE = YES

19
trunk/paradiseo-peo/tutorial/Lesson5/schema.xml Normal file
View file

@ -0,0 +1,19 @@
<?xml version="1.0"?>
<schema>
<group scheduler="0">
<node name="0" num_workers="0">
</node>
<node name="1" num_workers="0">
<runner>1</runner>
<runner>2</runner>
</node>
<node name="2" num_workers="1">
</node>
<node name="3" num_workers="1">
</node>
</group>
</schema>