Extreme cleanup, see src/obsolete for details

eo/src/obsolete/eoTranspose.h

@@ -0,0 +1,94 @@
+// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
+
+//-----------------------------------------------------------------------------
+// eoTranspose.h
+// (c) GeNeura Team, 1998 Maarten Keijzer 2000
+/* 
+    This library is free software; you can redistribute it and/or
+    modify it under the terms of the GNU Lesser General Public
+    License as published by the Free Software Foundation; either
+    version 2 of the License, or (at your option) any later version.
+
+    This library is distributed in the hope that it will be useful,
+    but WITHOUT ANY WARRANTY; without even the implied warranty of
+    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+    Lesser General Public License for more details.
+
+    You should have received a copy of the GNU Lesser General Public
+    License along with this library; if not, write to the Free Software
+    Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
+
+    Contact: todos@geneura.ugr.es, http://geneura.ugr.es
+ */
+//-----------------------------------------------------------------------------
+
+#ifndef _EOTRANSPOSE_h
+#define _EOTRANSPOSE_h
+
+#include <vector>
+#include <list>
+
+#include <utils/eoRNG.h>
+#include <eoOp.h>
+#include <eoFixedLength.h>
+#include <eoVariableLength.h>
+/** 
+Transposition operator: interchanges the position of two genes
+of an EO. 
+*/
+template <class EOT >
+class eoTranspose: public eoMonOp<EOT>  
+{
+public:
+  
+  // Specialization for a vector
+  void operator()(eoFixedLength<typename EOT::Fitness, typename EOT::AtomType>& _eo )
+  {
+    unsigned pos1 = rng.random(_eo.size()),
+    pos2 = rng.random(_eo.size());
+  
+    if (pos1 != pos2)
+        swap(_eo[pos1], _eo[pos2]);
+
+    if (_eo[pos1] != _eo[pos2])
+        _eo.invalidate();
+  }
+
+  // Specialization for a list
+  void operator()(eoVariableLength<typename EOT::Fitness, typename EOT::AtomType>& _eo )
+  {
+    unsigned pos1 = rng.random(_eo.size()),
+    pos2 = rng.random(_eo.size());
+  
+    if (pos1 == pos2)
+        return;
+
+    if (pos1 > pos2)
+        swap(pos1,pos2);
+
+    pos2 -= pos1;
+    
+    typename EOT::iterator it1 = _eo.begin();
+
+    while (pos1--) {it1++;}
+
+    typename EOT::iterator it2 = it1;
+    
+    while (pos2--) {it2++;}
+
+    swap(*it1, *it2);
+
+    if (*it1 != *it2)
+        _eo.invalidate();
+  }
+  
+  /** Inherited from eoObject 
+      @see eoObject
+  */
+  virtual string className() const {return "eoTranspose";};
+  //@}
+    
+};
+
+#endif
+