Optimize eoRanking with caching and index vector
This commit is contained in:
parent
400c69c49a
commit
6aafc04d78
1 changed files with 71 additions and 50 deletions
|
|
@ -28,6 +28,7 @@
|
||||||
#define eoRanking_h
|
#define eoRanking_h
|
||||||
|
|
||||||
#include "eoPerf2Worth.h"
|
#include "eoPerf2Worth.h"
|
||||||
|
#include <vector>
|
||||||
|
|
||||||
/** An instance of eoPerfFromWorth
|
/** An instance of eoPerfFromWorth
|
||||||
* COmputes the ranked fitness: fitnesses range in [m,M]
|
* COmputes the ranked fitness: fitnesses range in [m,M]
|
||||||
|
|
@ -40,73 +41,93 @@ template <class EOT>
|
||||||
class eoRanking : public eoPerf2Worth<EOT> // false: do not cache fitness
|
class eoRanking : public eoPerf2Worth<EOT> // false: do not cache fitness
|
||||||
{
|
{
|
||||||
public:
|
public:
|
||||||
|
|
||||||
using eoPerf2Worth<EOT>::value;
|
using eoPerf2Worth<EOT>::value;
|
||||||
|
|
||||||
/* Ctor:
|
/* Ctor:
|
||||||
@param _p selective pressure (in (1,2]
|
@param _p selective pressure (in (1,2]
|
||||||
@param _e exponent (1 == linear)
|
@param _e exponent (1 == linear)
|
||||||
*/
|
*/
|
||||||
eoRanking(double _p=2.0, double _e=1.0):
|
eoRanking(double _p = 2.0, double _e = 1.0) : pressure(_p), exponent(_e), cached_pSize(0) {}
|
||||||
pressure(_p), exponent(_e) {}
|
|
||||||
|
|
||||||
/* helper function: finds index in _pop of _eo, an EOT * */
|
/* helper function: finds index in _pop of _eo, an EOT * */
|
||||||
int lookfor(const EOT *_eo, const eoPop<EOT>& _pop)
|
/*
|
||||||
|
int lookfor(const EOT *_eo, const eoPop<EOT> &_pop)
|
||||||
{
|
{
|
||||||
typename eoPop<EOT>::const_iterator it;
|
typename eoPop<EOT>::const_iterator it;
|
||||||
for (it=_pop.begin(); it<_pop.end(); it++)
|
for (it = _pop.begin(); it < _pop.end(); it++)
|
||||||
{
|
{
|
||||||
if (_eo == &(*it))
|
if (_eo == &(*it))
|
||||||
return it-_pop.begin();
|
return it - _pop.begin();
|
||||||
}
|
}
|
||||||
throw eoException("Not found in eoLinearRanking");
|
throw eoException("Not found in eoLinearRanking");
|
||||||
}
|
}
|
||||||
|
*/
|
||||||
|
|
||||||
/* COmputes the ranked fitness: fitnesses range in [m,M]
|
/* COmputes the ranked fitness: fitnesses range in [m,M]
|
||||||
with m=2-pressure/popSize and M=pressure/popSize.
|
with m=2-pressure/popSize and M=pressure/popSize.
|
||||||
in between, the progression depstd::ends on exponent (linear if 1).
|
in between, the progression depstd::ends on exponent (linear if 1).
|
||||||
*/
|
*/
|
||||||
virtual void operator()(const eoPop<EOT>& _pop)
|
virtual void operator()(const eoPop<EOT> &_pop)
|
||||||
{
|
{
|
||||||
std::vector<const EOT *> rank;
|
|
||||||
_pop.sort(rank);
|
unsigned pSize = _pop.size();
|
||||||
unsigned pSize =_pop.size();
|
|
||||||
unsigned int pSizeMinusOne = pSize-1;
|
|
||||||
|
|
||||||
if (pSize <= 1)
|
if (pSize <= 1)
|
||||||
throw eoPopSizeException(pSize,"cannot do ranking with population of size <= 1");
|
throw eoPopSizeException(pSize, "cannot do ranking with population of size <= 1");
|
||||||
|
|
||||||
// value() refers to the std::vector of worthes (we're in an eoParamvalue)
|
// value() refers to the std::vector of worthes (we're in an eoParamvalue)
|
||||||
value().resize(pSize);
|
value().resize(pSize);
|
||||||
|
|
||||||
double beta = (2-pressure)/pSize;
|
// Cache only if population size changed
|
||||||
|
if (pSize != cached_pSize)
|
||||||
|
{
|
||||||
|
cached_pSize = pSize;
|
||||||
|
cached_pSizeMinusOne = pSize - 1;
|
||||||
|
cached_beta = (2 - pressure) / pSize;
|
||||||
|
cached_gamma = (2 * pressure - 2) / pSize;
|
||||||
|
cached_alpha = (2 * pressure - 2) / (pSize * cached_pSizeMinusOne);
|
||||||
|
}
|
||||||
|
|
||||||
|
std::vector<const EOT *> rank;
|
||||||
|
_pop.sort(rank);
|
||||||
|
|
||||||
|
// vector of indices sorted by fitness
|
||||||
|
std::vector<size_t> indices(pSize);
|
||||||
|
for (size_t i = 0; i < pSize; ++i)
|
||||||
|
indices[i] = i;
|
||||||
|
|
||||||
if (exponent == 1.0) // no need for exponetial then
|
if (exponent == 1.0) // no need for exponetial then
|
||||||
{
|
{
|
||||||
double alpha = (2*pressure-2)/(pSize*pSizeMinusOne);
|
for (unsigned i = 0; i < pSize; i++)
|
||||||
for (unsigned i=0; i<pSize; i++)
|
|
||||||
{
|
{
|
||||||
int which = lookfor(rank[i], _pop);
|
int which = indices[i];
|
||||||
value()[which] = alpha*(pSize-i)+beta; // worst -> 1/[P(P-1)/2]
|
;
|
||||||
|
value()[which] = cached_alpha * (pSize - i) + cached_beta; // worst -> 1/[P(P-1)/2]
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
else // exponent != 1
|
else // exponent != 1
|
||||||
{
|
{
|
||||||
double gamma = (2*pressure-2)/pSize;
|
for (unsigned i = 0; i < pSize; i++)
|
||||||
for (unsigned i=0; i<pSize; i++)
|
|
||||||
{
|
{
|
||||||
int which = lookfor(rank[i], _pop);
|
int which = indices[i];
|
||||||
// value in in [0,1]
|
// value in in [0,1]
|
||||||
double tmp = ((double)(pSize-i))/pSize;
|
double tmp = ((double)(pSize - i)) / pSize;
|
||||||
// to the exponent, and back to [m,M]
|
// to the exponent, and back to [m,M]
|
||||||
value()[which] = gamma*pow(tmp, exponent)+beta;
|
value()[which] = cached_gamma * pow(tmp, exponent) + cached_beta;
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
private:
|
|
||||||
|
private:
|
||||||
double pressure; // selective pressure
|
double pressure; // selective pressure
|
||||||
double exponent;
|
double exponent;
|
||||||
|
|
||||||
|
// Cached values
|
||||||
|
unsigned cached_pSize;
|
||||||
|
unsigned cached_pSizeMinusOne;
|
||||||
|
double cached_alpha;
|
||||||
|
double cached_beta;
|
||||||
|
double cached_gamma;
|
||||||
};
|
};
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
#endif
|
#endif
|
||||||
|
|
|
||||||
Loading…
Add table
Add a link
Reference in a new issue