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* indentations + whitespace cleanup

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This commit is contained in:
Caner Candan 2011-05-05 16:54:00 +02:00
commit 56c6edab04
285 changed files with 6068 additions and 6223 deletions
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17
eo/src/CMakeLists.txt
View file

@ -11,14 +11,15 @@ INCLUDE_DIRECTORIES(${CMAKE_CURRENT_SOURCE_DIR})
SET(EO_LIB_OUTPUT_PATH ${EO_BINARY_DIR}/lib)
SET(LIBRARY_OUTPUT_PATH ${EO_LIB_OUTPUT_PATH})
SET (EO_SOURCES eoFunctorStore.cpp
eoPersistent.cpp
eoPrintable.cpp
eoCtrlCContinue.cpp
eoScalarFitnessAssembled.cpp
eoSIGContinue.cpp)
SET(EO_SOURCES
eoFunctorStore.cpp
eoPersistent.cpp
eoPrintable.cpp
eoCtrlCContinue.cpp
eoScalarFitnessAssembled.cpp
eoSIGContinue.cpp
)
ADD_LIBRARY(eo STATIC ${EO_SOURCES})
INSTALL(TARGETS eo ARCHIVE DESTINATION lib COMPONENT libraries)
@ -42,6 +43,6 @@ ADD_SUBDIRECTORY(ga)
ADD_SUBDIRECTORY(gp)
ADD_SUBDIRECTORY(other)
ADD_SUBDIRECTORY(utils)
ADD_SUBDIRECTORY(pyeo)
######################################################################################

43
eo/src/EO.h
View file

@ -40,17 +40,17 @@
*/
/** EO is the base class for objects with a fitness.
Those evolvable objects are the subjects of
evolution. EOs have only got a fitness, which at the same time needs to be
only an object with the operation less than (<) defined. Fitness says how
good is the object; evolution or change of these objects is left to the
genetic operators.
genetic operators.
A fitness less than another means a worse fitness, in
whatever the context; thus, fitness is always maximized; although it can
be minimized with a proper definition of the < operator.
be minimized with a proper definition of the < operator.
A fitness can be invalid if undefined, trying to read an invalid fitness will raise an error.
@ref Operators that effectively modify EO objects must invalidate them.
@ -123,23 +123,23 @@ public:
* @throw runtime_std::exception If a valid object can't be read.
*/
virtual void readFrom(std::istream& _is) {
// the new version of the reafFrom function.
// It can distinguish between valid and invalid fitness values.
// It can distinguish between valid and invalid fitness values.
std::string fitness_str;
int pos = _is.tellg();
_is >> fitness_str;
_is >> fitness_str;
if (fitness_str == "INVALID")
{
invalidFitness = true;
}
else
{
invalidFitness = false;
_is.seekg(pos); // rewind
_is >> repFitness;
}
if (fitness_str == "INVALID")
{
invalidFitness = true;
}
else
{
invalidFitness = false;
_is.seekg(pos); // rewind
_is >> repFitness;
}
}
/**
@ -151,13 +151,13 @@ public:
// the latest version of the code. Very similar to the old code
if (invalid()) {
_os << "INVALID ";
_os << "INVALID ";
}
else
{
_os << repFitness << ' ';
_os << repFitness << ' ';
}
}
//@}
@ -171,4 +171,3 @@ private:
#endif
/** @} */

12
eo/src/PO.h
View file

@ -1,5 +1,5 @@
// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
//-----------------------------------------------------------------------------
// PO.h
// (c) OPAC 2007
@ -43,11 +43,11 @@ template < class F > class PO:public EO < F >
public:
#if defined(__CUDACC__)
typedef typename EO < F >::Fitness Fitness;
#else
typedef typename PO<F>::Fitness Fitness;
#endif
#if defined(__CUDACC__)
typedef typename EO < F >::Fitness Fitness;
#else
typedef typename PO<F>::Fitness Fitness;
#endif
/** Default constructor.
Fitness must have a ctor which takes 0 as a value. Best fitness mush also have the same constructor.

6
eo/src/do/Readme
View file

@ -9,11 +9,11 @@ the functions here for eoBit<double> AND eoBit<eoMinimizingFitness>
and in EO test dir the t-eoGA.cpp file that is a sample program that uses
the whole facility.
All make_XXX.h file define some parser-based constructions of basic
All make_XXX.h file define some parser-based constructions of basic
Evolutionary Algorithms components, using state-based memory management
(see in src/utils dir, or read the tutorial).
In this src/do dir, the following ***representation indedendent*** code
In this src/do dir, the following ***representation indedendent*** code
is defined
make_algo_scalar.h The selection/replacement for scalar fitnesses
@ -23,7 +23,7 @@ make_pop.h Init of the population (from an EOT initializer)
make_run.h Run the algorithm
See also (NOW MOVED TO util DIR, as it was useful everywhere)
make_help.cpp Help on demand (+ status file)
make_help.cpp Help on demand (+ status file)
Note:
-----

188
eo/src/do/make_algo_easea.h
View file

@ -3,7 +3,7 @@
//-----------------------------------------------------------------------------
// make_algo_easea.h
// (c) Marc Schoenauer and Pierre Collet, 2002
/*
/*
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
@ -81,18 +81,18 @@ eoAlgo<EOT> & do_make_algo_scalar(eoParser& _parser, eoState& _state, eoPopEvalF
eoParamParamType & ppSelect = selectionParam.value(); // std::pair<std::string,std::vector<std::string> >
eoSelectOne<EOT>* select ;
if (ppSelect.first == std::string("DetTour"))
if (ppSelect.first == std::string("DetTour"))
{
unsigned detSize;
if (!ppSelect.second.size()) // no parameter added
{
std::cerr << "WARNING, no parameter passed to DetTour, using 2" << std::endl;
detSize = 2;
// put back 2 in parameter for consistency (and status file)
ppSelect.second.push_back(std::string("2"));
std::cerr << "WARNING, no parameter passed to DetTour, using 2" << std::endl;
detSize = 2;
// put back 2 in parameter for consistency (and status file)
ppSelect.second.push_back(std::string("2"));
}
else // parameter passed by user as DetTour(T)
else // parameter passed by user as DetTour(T)
detSize = atoi(ppSelect.second[0].c_str());
select = new eoDetTournamentSelect<EOT>(detSize);
}
@ -100,57 +100,57 @@ eoAlgo<EOT> & do_make_algo_scalar(eoParser& _parser, eoState& _state, eoPopEvalF
{
double p;
if (!ppSelect.second.size()) // no parameter added
{
std::cerr << "WARNING, no parameter passed to StochTour, using 1" << std::endl;
p = 1;
// put back p in parameter for consistency (and status file)
ppSelect.second.push_back(std::string("1"));
}
else // parameter passed by user as DetTour(T)
p = atof(ppSelect.second[0].c_str());
{
std::cerr << "WARNING, no parameter passed to StochTour, using 1" << std::endl;
p = 1;
// put back p in parameter for consistency (and status file)
ppSelect.second.push_back(std::string("1"));
}
else // parameter passed by user as DetTour(T)
p = atof(ppSelect.second[0].c_str());
select = new eoStochTournamentSelect<EOT>(p);
}
else if (ppSelect.first == std::string("Ranking"))
{
double p,e;
if (ppSelect.second.size()==2) // 2 parameters: pressure and exponent
{
p = atof(ppSelect.second[0].c_str());
e = atof(ppSelect.second[1].c_str());
}
else if (ppSelect.second.size()==1) // 1 parameter: pressure
{
std::cerr << "WARNING, no exponent to Ranking, using 1" << std::endl;
e = 1;
ppSelect.second.push_back(std::string("1"));
p = atof(ppSelect.second[0].c_str());
}
{
p = atof(ppSelect.second[0].c_str());
e = atof(ppSelect.second[1].c_str());
}
else if (ppSelect.second.size()==1) // 1 parameter: pressure
{
std::cerr << "WARNING, no exponent to Ranking, using 1" << std::endl;
e = 1;
ppSelect.second.push_back(std::string("1"));
p = atof(ppSelect.second[0].c_str());
}
else // no parameters ... or garbage
{
std::cerr << "WARNING, no parameter to Ranking, using (2,1)" << std::endl;
p=2;
e=1;
// put back in parameter for consistency (and status file)
ppSelect.second.resize(2); // just in case
ppSelect.second[0] = (std::string("2"));
ppSelect.second[1] = (std::string("1"));
}
{
std::cerr << "WARNING, no parameter to Ranking, using (2,1)" << std::endl;
p=2;
e=1;
// put back in parameter for consistency (and status file)
ppSelect.second.resize(2); // just in case
ppSelect.second[0] = (std::string("2"));
ppSelect.second[1] = (std::string("1"));
}
// check for authorized values
// pressure in (0,1]
if ( (p<=1) || (p>2) )
{
std::cerr << "WARNING, selective pressure must be in (1,2] in Ranking, using 2\n";
p=2;
ppSelect.second[0] = (std::string("2"));
}
{
std::cerr << "WARNING, selective pressure must be in (1,2] in Ranking, using 2\n";
p=2;
ppSelect.second[0] = (std::string("2"));
}
// exponent >0
if (e<=0)
{
std::cerr << "WARNING, exponent must be positive in Ranking, using 1\n";
e=1;
ppSelect.second[1] = (std::string("1"));
}
{
std::cerr << "WARNING, exponent must be positive in Ranking, using 1\n";
e=1;
ppSelect.second[1] = (std::string("1"));
}
// now we're OK
eoPerf2Worth<EOT> & p2w = _state.storeFunctor( new eoRanking<EOT>(p,e) );
select = new eoRouletteWorthSelect<EOT>(p2w);
@ -159,13 +159,13 @@ eoAlgo<EOT> & do_make_algo_scalar(eoParser& _parser, eoState& _state, eoPopEvalF
{
bool b;
if (ppSelect.second.size() == 0) // no argument -> default = ordered
{
b=true;
// put back in parameter for consistency (and status file)
ppSelect.second.push_back(std::string("ordered"));
}
{
b=true;
// put back in parameter for consistency (and status file)
ppSelect.second.push_back(std::string("ordered"));
}
else
b = !(ppSelect.second[0] == std::string("unordered"));
b = !(ppSelect.second[0] == std::string("unordered"));
select = new eoSequentialSelect<EOT>(b);
}
else if (ppSelect.first == std::string("EliteSequential")) // Best first, one after the other in random order afterwards
@ -188,7 +188,7 @@ eoAlgo<EOT> & do_make_algo_scalar(eoParser& _parser, eoState& _state, eoPopEvalF
_state.storeFunctor(select);
// the number of offspring
// the number of offspring
eoValueParam<eoHowMany>& offspringRateParam = _parser.createParam(eoHowMany(1.0), "nbOffspring", "Nb of offspring (percentage or absolute)", 'O', "Evolution Engine");
/////////////////////////////////////////////////////
@ -196,7 +196,7 @@ eoAlgo<EOT> & do_make_algo_scalar(eoParser& _parser, eoState& _state, eoPopEvalF
/////////////////////////////////////////////////////
/** Replacement type - high level: predefined replacements
* ESComma :
* ESComma :
* elite = 0
* surviveParents=0 (no reduce)
* surviveOffspring=100% (no reduce)
@ -208,8 +208,8 @@ eoAlgo<EOT> & do_make_algo_scalar(eoParser& _parser, eoState& _state, eoPopEvalF
* GGA : generational GA - idem ESComma except for
* offspringRate = 100%
* all reducers are unused
*
* SSGA(T/t) : Steady-State GA
*
* SSGA(T/t) : Steady-State GA
* surviveParents = 1.0 - offspringRate
* reduceFinal = DetTour(T>1) ou StochTour(0.5<t<1)
*
@ -246,28 +246,28 @@ eoAlgo<EOT> & do_make_algo_scalar(eoParser& _parser, eoState& _state, eoPopEvalF
// the tournament size
if (!replacementParam.second.size()) // no parameter added
{
std::cerr << "WARNING, no parameter passed to MGG replacement, using 2" << std::endl;
tSize = 2;
// put back 2 in parameter for consistency (and status file)
replacementParam.second.push_back(std::string("2"));
std::cerr << "WARNING, no parameter passed to MGG replacement, using 2" << std::endl;
tSize = 2;
// put back 2 in parameter for consistency (and status file)
replacementParam.second.push_back(std::string("2"));
}
else
{
t = atof(replacementParam.second[0].c_str());
if (t>=2)
{ // build the appropriate deafult value
tSize = unsigned(t);
}
else
{
throw std::runtime_error("Sorry, only deterministic tournament available at the moment");
}
t = atof(replacementParam.second[0].c_str());
if (t>=2)
{ // build the appropriate deafult value
tSize = unsigned(t);
}
else
{
throw std::runtime_error("Sorry, only deterministic tournament available at the moment");
}
}
ptReplace = new eoMGGReplacement<EOT>(-surviveParents, tSize);
ptReplace = new eoMGGReplacement<EOT>(-surviveParents, tSize);
_state.storeFunctor(ptReplace);
}
else { // until the end of what was the only loop/switch
// the default deafult values
eoHowMany elite (0.0);
bool strongElitism (false);
@ -283,12 +283,12 @@ eoAlgo<EOT> & do_make_algo_scalar(eoParser& _parser, eoState& _state, eoPopEvalF
// ---------- General
if (replacementParam.first == std::string("General"))
{
; // defaults OK
; // defaults OK
}
// ---------- ESComma
else if (replacementParam.first == std::string("ESComma"))
{
; // OK too
; // OK too
}
// ---------- ESPlus
else if (replacementParam.first == std::string("ESPlus"))
@ -298,16 +298,16 @@ eoAlgo<EOT> & do_make_algo_scalar(eoParser& _parser, eoState& _state, eoPopEvalF
// ---------- Generational
else if (replacementParam.first == std::string("Generational"))
{
; // OK too (we should check nb of offspring)
; // OK too (we should check nb of offspring)
}
// ---------- EP
else if (replacementParam.first == std::string("EP"))
{
if (!replacementParam.second.size()) // no parameter added
{
std::cerr << "WARNING, no parameter passed to EP replacement, using 6" << std::endl;
// put back 6 in parameter for consistency (and status file)
replacementParam.second.push_back(std::string("6"));
std::cerr << "WARNING, no parameter passed to EP replacement, using 6" << std::endl;
// put back 6 in parameter for consistency (and status file)
replacementParam.second.push_back(std::string("6"));
}
// by coincidence, the syntax for the EP reducer is the same than here:
reduceFinalType = replacementParam;
@ -318,28 +318,28 @@ eoAlgo<EOT> & do_make_algo_scalar(eoParser& _parser, eoState& _state, eoPopEvalF
{
if (!replacementParam.second.size()) // no parameter added
{
std::cerr << "WARNING, no parameter passed to SSGA replacement, using 2" << std::endl;
// put back 2 in parameter for consistency (and status file)
replacementParam.second.push_back(std::string("2"));
reduceParentType = eoParamParamType(std::string("DetTour(2)"));
std::cerr << "WARNING, no parameter passed to SSGA replacement, using 2" << std::endl;
// put back 2 in parameter for consistency (and status file)
replacementParam.second.push_back(std::string("2"));
reduceParentType = eoParamParamType(std::string("DetTour(2)"));
}
else
{
t = atof(replacementParam.second[0].c_str());
if (t>=2)
{ // build the appropriate deafult value
reduceParentType = eoParamParamType(std::string("DetTour(") + replacementParam.second[0].c_str() + ")");
}
else // check for [0.5,1] will be made in make_general_replacement
{ // build the appropriate deafult value
reduceParentType = eoParamParamType(std::string("StochTour(") + replacementParam.second[0].c_str() + ")");
}
t = atof(replacementParam.second[0].c_str());
if (t>=2)
{ // build the appropriate deafult value
reduceParentType = eoParamParamType(std::string("DetTour(") + replacementParam.second[0].c_str() + ")");
}
else // check for [0.5,1] will be made in make_general_replacement
{ // build the appropriate deafult value
reduceParentType = eoParamParamType(std::string("StochTour(") + replacementParam.second[0].c_str() + ")");
}
}
//
//
surviveParents = eoHowMany(-1);
surviveOffspring = eoHowMany(1);
}
else // no replacement recognized
else // no replacement recognized
{
throw std::runtime_error("Invalid replacement type " + replacementParam.first);
}
@ -353,7 +353,7 @@ eoAlgo<EOT> & do_make_algo_scalar(eoParser& _parser, eoState& _state, eoPopEvalF
///////////////////////////////
// the general breeder
///////////////////////////////
eoGeneralBreeder<EOT> *breed =
eoGeneralBreeder<EOT> *breed =
new eoGeneralBreeder<EOT>(*select, _op, offspringRateParam.value());
_state.storeFunctor(breed);
@ -381,7 +381,7 @@ eoAlgo<EOT> & do_make_algo_scalar(eoParser& _parser, eoState& _state, eoPopEvalF
template <class EOT>
eoAlgo<EOT> & do_make_algo_scalar(eoParser& _parser, eoState& _state, eoEvalFunc<EOT>& _eval, eoContinue<EOT>& _continue, eoGenOp<EOT>& _op)
{
do_make_algo_scalar( _parser, _state, *(new eoPopLoopEval<EOT>(_eval)), _continue, _op);
do_make_algo_scalar( _parser, _state, *(new eoPopLoopEval<EOT>(_eval)), _continue, _op);
}

182
eo/src/do/make_algo_scalar.h
View file

@ -3,7 +3,7 @@
//-----------------------------------------------------------------------------
// make_algo_scalar.h
// (c) Maarten Keijzer, Marc Schoenauer and GeNeura Team, 2001
/*
/*
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
@ -84,42 +84,42 @@ eoAlgo<EOT> & do_make_algo_scalar(eoParser& _parser, eoState& _state, eoEvalFunc
if (_dist == NULL)
comment = "Selection: DetTour(T), StochTour(t), Roulette, Ranking(p,e) or Sequential(ordered/unordered)";
else
comment = "Selection: DetTour(T), StochTour(t), Roulette, Ranking(p,e), Sharing(sigma_share) or Sequential(ordered/unordered)";
comment = "Selection: DetTour(T), StochTour(t), Roulette, Ranking(p,e), Sharing(sigma_share) or Sequential(ordered/unordered)";
eoValueParam<eoParamParamType>& selectionParam = _parser.createParam(eoParamParamType("DetTour(2)"), "selection", comment, 'S', "Evolution Engine");
eoParamParamType & ppSelect = selectionParam.value(); // std::pair<std::string,std::vector<std::string> >
eoSelectOne<EOT>* select ;
if (ppSelect.first == std::string("DetTour"))
if (ppSelect.first == std::string("DetTour"))
{
unsigned detSize;
if (!ppSelect.second.size()) // no parameter added
{
std::cerr << "WARNING, no parameter passed to DetTour, using 2" << std::endl;
detSize = 2;
// put back 2 in parameter for consistency (and status file)
ppSelect.second.push_back(std::string("2"));
std::cerr << "WARNING, no parameter passed to DetTour, using 2" << std::endl;
detSize = 2;
// put back 2 in parameter for consistency (and status file)
ppSelect.second.push_back(std::string("2"));
}
else // parameter passed by user as DetTour(T)
else // parameter passed by user as DetTour(T)
detSize = atoi(ppSelect.second[0].c_str());
select = new eoDetTournamentSelect<EOT>(detSize);
}
else if (ppSelect.first == std::string("Sharing"))
else if (ppSelect.first == std::string("Sharing"))
{
double nicheSize;
if (!ppSelect.second.size()) // no parameter added
{
std::cerr << "WARNING, no parameter passed to Sharing, using 0.5" << std::endl;
nicheSize = 0.5;
// put back 2 in parameter for consistency (and status file)
ppSelect.second.push_back(std::string("0.5"));
std::cerr << "WARNING, no parameter passed to Sharing, using 0.5" << std::endl;
nicheSize = 0.5;
// put back 2 in parameter for consistency (and status file)
ppSelect.second.push_back(std::string("0.5"));
}
else // parameter passed by user as DetTour(T)
else // parameter passed by user as DetTour(T)
nicheSize = atof(ppSelect.second[0].c_str());
if (_dist == NULL) // no distance
if (_dist == NULL) // no distance
throw std::runtime_error("You didn't specify a distance when calling make_algo_scalar and using sharing");
select = new eoSharingSelect<EOT>(nicheSize, *_dist);
}
@ -127,57 +127,57 @@ eoAlgo<EOT> & do_make_algo_scalar(eoParser& _parser, eoState& _state, eoEvalFunc
{
double p;
if (!ppSelect.second.size()) // no parameter added
{
std::cerr << "WARNING, no parameter passed to StochTour, using 1" << std::endl;
p = 1;
// put back p in parameter for consistency (and status file)
ppSelect.second.push_back(std::string("1"));
}
else // parameter passed by user as DetTour(T)
p = atof(ppSelect.second[0].c_str());
{
std::cerr << "WARNING, no parameter passed to StochTour, using 1" << std::endl;
p = 1;
// put back p in parameter for consistency (and status file)
ppSelect.second.push_back(std::string("1"));
}
else // parameter passed by user as DetTour(T)
p = atof(ppSelect.second[0].c_str());
select = new eoStochTournamentSelect<EOT>(p);
}
else if (ppSelect.first == std::string("Ranking"))
{
double p,e;
if (ppSelect.second.size()==2) // 2 parameters: pressure and exponent
{
p = atof(ppSelect.second[0].c_str());
e = atof(ppSelect.second[1].c_str());
}
else if (ppSelect.second.size()==1) // 1 parameter: pressure
{
std::cerr << "WARNING, no exponent to Ranking, using 1" << std::endl;
e = 1;
ppSelect.second.push_back(std::string("1"));
p = atof(ppSelect.second[0].c_str());
}
{
p = atof(ppSelect.second[0].c_str());
e = atof(ppSelect.second[1].c_str());
}
else if (ppSelect.second.size()==1) // 1 parameter: pressure
{
std::cerr << "WARNING, no exponent to Ranking, using 1" << std::endl;
e = 1;
ppSelect.second.push_back(std::string("1"));
p = atof(ppSelect.second[0].c_str());
}
else // no parameters ... or garbage
{
std::cerr << "WARNING, no parameter to Ranking, using (2,1)" << std::endl;
p=2;
e=1;
// put back in parameter for consistency (and status file)
ppSelect.second.resize(2); // just in case
ppSelect.second[0] = (std::string("2"));
ppSelect.second[1] = (std::string("1"));
}
{
std::cerr << "WARNING, no parameter to Ranking, using (2,1)" << std::endl;
p=2;
e=1;
// put back in parameter for consistency (and status file)
ppSelect.second.resize(2); // just in case
ppSelect.second[0] = (std::string("2"));
ppSelect.second[1] = (std::string("1"));
}
// check for authorized values
// pressure in (0,1]
if ( (p<=1) || (p>2) )
{
std::cerr << "WARNING, selective pressure must be in (0,1] in Ranking, using 2\n";
p=2;
ppSelect.second[0] = (std::string("2"));
}
{
std::cerr << "WARNING, selective pressure must be in (0,1] in Ranking, using 2\n";
p=2;
ppSelect.second[0] = (std::string("2"));
}
// exponent >0
if (e<=0)
{
std::cerr << "WARNING, exponent must be positive in Ranking, using 1\n";
e=1;
ppSelect.second[1] = (std::string("1"));
}
{
std::cerr << "WARNING, exponent must be positive in Ranking, using 1\n";
e=1;
ppSelect.second[1] = (std::string("1"));
}
// now we're OK
eoPerf2Worth<EOT> & p2w = _state.storeFunctor( new eoRanking<EOT>(p,e) );
select = new eoRouletteWorthSelect<EOT>(p2w);
@ -186,13 +186,13 @@ eoAlgo<EOT> & do_make_algo_scalar(eoParser& _parser, eoState& _state, eoEvalFunc
{
bool b;
if (ppSelect.second.size() == 0) // no argument -> default = ordered
{
b=true;
// put back in parameter for consistency (and status file)
ppSelect.second.push_back(std::string("ordered"));
}
{
b=true;
// put back in parameter for consistency (and status file)
ppSelect.second.push_back(std::string("ordered"));
}
else
b = !(ppSelect.second[0] == std::string("unordered"));
b = !(ppSelect.second[0] == std::string("unordered"));
select = new eoSequentialSelect<EOT>(b);
}
else if (ppSelect.first == std::string("Roulette")) // no argument (yet)
@ -211,7 +211,7 @@ eoAlgo<EOT> & do_make_algo_scalar(eoParser& _parser, eoState& _state, eoEvalFunc
_state.storeFunctor(select);
// the number of offspring
// the number of offspring
eoValueParam<eoHowMany>& offspringRateParam = _parser.createParam(eoHowMany(1.0), "nbOffspring", "Nb of offspring (percentage or absolute)", 'O', "Evolution Engine");
// the replacement
@ -231,16 +231,16 @@ eoAlgo<EOT> & do_make_algo_scalar(eoParser& _parser, eoState& _state, eoEvalFunc
else if (ppReplace.first == std::string("EPTour"))
{
unsigned detSize;
if (!ppReplace.second.size()) // no parameter added
{
std::cerr << "WARNING, no parameter passed to EPTour, using 6" << std::endl;
detSize = 6;
// put back in parameter for consistency (and status file)
ppReplace.second.push_back(std::string("6"));
}
else // parameter passed by user as EPTour(T)
detSize = atoi(ppSelect.second[0].c_str());
{
std::cerr << "WARNING, no parameter passed to EPTour, using 6" << std::endl;
detSize = 6;
// put back in parameter for consistency (and status file)
ppReplace.second.push_back(std::string("6"));
}
else // parameter passed by user as EPTour(T)
detSize = atoi(ppSelect.second[0].c_str());
replace = new eoEPReplacement<EOT>(detSize);
}
@ -251,32 +251,32 @@ eoAlgo<EOT> & do_make_algo_scalar(eoParser& _parser, eoState& _state, eoEvalFunc
else if (ppReplace.first == std::string("SSGADet"))
{
unsigned detSize;
if (!ppReplace.second.size()) // no parameter added
{
std::cerr << "WARNING, no parameter passed to SSGADet, using 2" << std::endl;
detSize = 2;
// put back in parameter for consistency (and status file)
ppReplace.second.push_back(std::string("2"));
}
else // parameter passed by user as SSGADet(T)
detSize = atoi(ppSelect.second[0].c_str());
{
std::cerr << "WARNING, no parameter passed to SSGADet, using 2" << std::endl;
detSize = 2;
// put back in parameter for consistency (and status file)
ppReplace.second.push_back(std::string("2"));
}
else // parameter passed by user as SSGADet(T)
detSize = atoi(ppSelect.second[0].c_str());
replace = new eoSSGADetTournamentReplacement<EOT>(detSize);
}
else if (ppReplace.first == std::string("SSGAStoch"))
{
double p;
if (!ppReplace.second.size()) // no parameter added
{
std::cerr << "WARNING, no parameter passed to SSGAStoch, using 1" << std::endl;
p = 1;
// put back in parameter for consistency (and status file)
ppReplace.second.push_back(std::string("1"));
}
else // parameter passed by user as SSGADet(T)
p = atof(ppSelect.second[0].c_str());
{
std::cerr << "WARNING, no parameter passed to SSGAStoch, using 1" << std::endl;
p = 1;
// put back in parameter for consistency (and status file)
ppReplace.second.push_back(std::string("1"));
}
else // parameter passed by user as SSGADet(T)
p = atof(ppSelect.second[0].c_str());
replace = new eoSSGAStochTournamentReplacement<EOT>(p);
}
else
@ -294,10 +294,10 @@ eoAlgo<EOT> & do_make_algo_scalar(eoParser& _parser, eoState& _state, eoEvalFunc
eoReplacement<EOT> *replaceTmp = replace;
replace = new eoWeakElitistReplacement<EOT>(*replaceTmp);
_state.storeFunctor(replace);
}
}
// the general breeder
eoGeneralBreeder<EOT> *breed =
eoGeneralBreeder<EOT> *breed =
new eoGeneralBreeder<EOT>(*select, _op, offspringRateParam.value());
_state.storeFunctor(breed);

179
eo/src/do/make_checkpoint.h
View file

@ -129,7 +129,7 @@ eoCheckPoint<EOT>& do_make_checkpoint(eoParser& _parser, eoState& _state, eoValu
eoValueParam<bool>& eraseParam = _parser.createParam(true, "eraseDir", "erase files in dirName if any", '\0', "Output - Disk");
bool dirOK = false; // not tested yet
bool dirOK = false; // not tested yet
@ -179,15 +179,15 @@ eoCheckPoint<EOT>& do_make_checkpoint(eoParser& _parser, eoState& _state, eoValu
{
bestStat = new eoBestFitnessStat<EOT>;
bestStat = new eoBestFitnessStat<EOT>;
// store it
// store it
_state.storeFunctor(bestStat);
_state.storeFunctor(bestStat);
// add it to the checkpoint
// add it to the checkpoint
checkpoint->add(*bestStat);
checkpoint->add(*bestStat);
}
@ -203,15 +203,15 @@ eoCheckPoint<EOT>& do_make_checkpoint(eoParser& _parser, eoState& _state, eoValu
{
averageStat = new eoAverageStat<EOT>;
averageStat = new eoAverageStat<EOT>;
// store it
// store it
_state.storeFunctor(averageStat);
_state.storeFunctor(averageStat);
// add it to the checkpoint
// add it to the checkpoint
checkpoint->add(*averageStat);
checkpoint->add(*averageStat);
}
@ -223,19 +223,19 @@ eoCheckPoint<EOT>& do_make_checkpoint(eoParser& _parser, eoState& _state, eoValu
eoSecondMomentStats<EOT> *secondStat = NULL;
if ( printBestParam.value() || fileBestParam.value() ) // we need it for screen output or file output
if ( printBestParam.value() || fileBestParam.value() ) // we need it for screen output or file output
{
secondStat = new eoSecondMomentStats<EOT>;
secondStat = new eoSecondMomentStats<EOT>;
// store it
// store it
_state.storeFunctor(secondStat);
_state.storeFunctor(secondStat);
// add it to the checkpoint
// add it to the checkpoint
checkpoint->add(*secondStat);
checkpoint->add(*secondStat);
}
@ -255,15 +255,15 @@ eoCheckPoint<EOT>& do_make_checkpoint(eoParser& _parser, eoState& _state, eoValu
{
popStat = new eoSortedPopStat<EOT>;
popStat = new eoSortedPopStat<EOT>;
// store it
// store it
_state.storeFunctor(popStat);
_state.storeFunctor(popStat);
// add it to the checkpoint
// add it to the checkpoint
checkpoint->add(*popStat);
checkpoint->add(*popStat);
}
@ -287,7 +287,7 @@ eoCheckPoint<EOT>& do_make_checkpoint(eoParser& _parser, eoState& _state, eoValu
bool needStdoutMonitor = printBestParam.value()
|| printPopParam.value() ;
|| printPopParam.value() ;
@ -297,53 +297,53 @@ eoCheckPoint<EOT>& do_make_checkpoint(eoParser& _parser, eoState& _state, eoValu
{
eoStdoutMonitor *monitor = new eoStdoutMonitor(false);
eoStdoutMonitor *monitor = new eoStdoutMonitor(false);
_state.storeFunctor(monitor);
_state.storeFunctor(monitor);
// when called by the checkpoint (i.e. at every generation)
// when called by the checkpoint (i.e. at every generation)
checkpoint->add(*monitor);
checkpoint->add(*monitor);
// the monitor will output a series of parameters: add them
// the monitor will output a series of parameters: add them
monitor->add(*generationCounter);
monitor->add(*generationCounter);
if (useEvalParam.value()) // we want nb of evaluations
if (useEvalParam.value()) // we want nb of evaluations
monitor->add(_eval);
monitor->add(_eval);
if (useTimeParam.value()) // we want time
if (useTimeParam.value()) // we want time
{
{
tCounter = new eoTimeCounter;
tCounter = new eoTimeCounter;
_state.storeFunctor(tCounter);
_state.storeFunctor(tCounter);
checkpoint->add(*tCounter);
checkpoint->add(*tCounter);
monitor->add(*tCounter);
monitor->add(*tCounter);
}
}
if (printBestParam.value())
if (printBestParam.value())
{
{
monitor->add(*bestStat);
monitor->add(*bestStat);
monitor->add(*secondStat);
monitor->add(*secondStat);
}
}
if ( printPopParam.value())
if ( printPopParam.value())
monitor->add(*popStat);
monitor->add(*popStat);
}
@ -353,9 +353,9 @@ eoCheckPoint<EOT>& do_make_checkpoint(eoParser& _parser, eoState& _state, eoValu
if ( ( fileBestParam.value() || plotBestParam.value() ||
plotHistogramParam.value() )
plotHistogramParam.value() )
&& !dirOK ) // just in case we add something before
&& !dirOK ) // just in case we add something before
dirOK = testDirRes(dirNameParam.value(), eraseParam.value()); // TRUE
@ -367,41 +367,41 @@ eoCheckPoint<EOT>& do_make_checkpoint(eoParser& _parser, eoState& _state, eoValu
#ifdef _MSVC
std::string stmp = dirNameParam.value() + "\best.xg";
std::string stmp = dirNameParam.value() + "\best.xg";
#else
std::string stmp = dirNameParam.value() + "/best.xg";
std::string stmp = dirNameParam.value() + "/best.xg";
#endif
eoFileMonitor *fileMonitor = new eoFileMonitor(stmp);
eoFileMonitor *fileMonitor = new eoFileMonitor(stmp);
// save and give to checkpoint
// save and give to checkpoint
_state.storeFunctor(fileMonitor);
_state.storeFunctor(fileMonitor);
checkpoint->add(*fileMonitor);
checkpoint->add(*fileMonitor);
// and feed with some statistics
// and feed with some statistics
fileMonitor->add(*generationCounter);
fileMonitor->add(*generationCounter);
fileMonitor->add(_eval);
fileMonitor->add(_eval);
if (tCounter) // we want the time as well
if (tCounter) // we want the time as well
{
{
// std::cout << "On met timecounter\n";
// std::cout << "On met timecounter\n";
fileMonitor->add(*tCounter);
fileMonitor->add(*tCounter);
}
}
fileMonitor->add(*bestStat);
fileMonitor->add(*bestStat);
fileMonitor->add(*secondStat);
fileMonitor->add(*secondStat);
}
@ -413,33 +413,33 @@ eoCheckPoint<EOT>& do_make_checkpoint(eoParser& _parser, eoState& _state, eoValu
{
std::string stmp = dirNameParam.value() + "/gnu_best.xg";
std::string stmp = dirNameParam.value() + "/gnu_best.xg";
eoGnuplot1DMonitor *gnuMonitor = new eoGnuplot1DMonitor(stmp,minimizing_fitness<EOT>());
eoGnuplot1DMonitor *gnuMonitor = new eoGnuplot1DMonitor(stmp,minimizing_fitness<EOT>());
// save and give to checkpoint
// save and give to checkpoint
_state.storeFunctor(gnuMonitor);
_state.storeFunctor(gnuMonitor);
checkpoint->add(*gnuMonitor);
checkpoint->add(*gnuMonitor);
// and feed with some statistics
// and feed with some statistics
if (useEvalParam.value()) // do we want eval as X coordinate
if (useEvalParam.value()) // do we want eval as X coordinate
gnuMonitor->add(_eval);
gnuMonitor->add(_eval);
else if (tCounter) // or time?
else if (tCounter) // or time?
gnuMonitor->add(*tCounter);
gnuMonitor->add(*tCounter);
else // default: generation
else // default: generation
gnuMonitor->add(*generationCounter);
gnuMonitor->add(*generationCounter);
gnuMonitor->add(*bestStat);
gnuMonitor->add(*bestStat);
gnuMonitor->add(*averageStat);
gnuMonitor->add(*averageStat);
}
@ -451,25 +451,25 @@ eoCheckPoint<EOT>& do_make_checkpoint(eoParser& _parser, eoState& _state, eoValu
{
eoScalarFitnessStat<EOT> *fitStat = new eoScalarFitnessStat<EOT>;
eoScalarFitnessStat<EOT> *fitStat = new eoScalarFitnessStat<EOT>;
_state.storeFunctor(fitStat);
_state.storeFunctor(fitStat);
checkpoint->add(*fitStat);
checkpoint->add(*fitStat);
// a gnuplot-based monitor for snapshots: needs a dir name
// a gnuplot-based monitor for snapshots: needs a dir name
eoGnuplot1DSnapshot *fitSnapshot = new eoGnuplot1DSnapshot(dirNameParam.value());
eoGnuplot1DSnapshot *fitSnapshot = new eoGnuplot1DSnapshot(dirNameParam.value());
_state.storeFunctor(fitSnapshot);
_state.storeFunctor(fitSnapshot);
// add any stat that is a std::vector<double> to it
// add any stat that is a std::vector<double> to it
fitSnapshot->add(*fitStat);
fitSnapshot->add(*fitStat);
// and of course add it to the checkpoint
// and of course add it to the checkpoint
checkpoint->add(*fitSnapshot);
checkpoint->add(*fitSnapshot);
}
@ -499,7 +499,7 @@ eoCheckPoint<EOT>& do_make_checkpoint(eoParser& _parser, eoState& _state, eoValu
if (! dirOK )
dirOK = testDirRes(dirNameParam.value(), eraseParam.value()); // TRUE
dirOK = testDirRes(dirNameParam.value(), eraseParam.value()); // TRUE
@ -537,7 +537,7 @@ eoCheckPoint<EOT>& do_make_checkpoint(eoParser& _parser, eoState& _state, eoValu
if (! dirOK )
dirOK = testDirRes(dirNameParam.value(), eraseParam.value()); // TRUE
dirOK = testDirRes(dirNameParam.value(), eraseParam.value()); // TRUE
@ -570,4 +570,3 @@ eoCheckPoint<EOT>& do_make_checkpoint(eoParser& _parser, eoState& _state, eoValu
#endif

184
eo/src/do/make_checkpoint_FDC.h
View file

@ -70,7 +70,7 @@ eoCheckPoint<EOT>& do_make_checkpoint(eoParser& _parser, eoState& _state, eoEval
eoValueParam<std::string>& dirNameParam = _parser.createParam(std::string("Res"), "resDir", "Directory to store DISK outputs", '\0', "Output - Disk");
// shoudl we empty it if exists
eoValueParam<bool>& eraseParam = _parser.createParam(false, "eraseDir", "erase files in dirName if any", '\0', "Output - Disk");
bool dirOK = false; // not tested yet
bool dirOK = false; // not tested yet
/////////////////////////////////////////
// now some statistics on the population:
@ -98,11 +98,11 @@ eoCheckPoint<EOT>& do_make_checkpoint(eoParser& _parser, eoState& _state, eoEval
if ( printBestParam.value() || plotBestParam.value() || fileBestParam.value() )
// we need the bestStat for at least one of the 3 above
{
bestStat = new eoBestFitnessStat<EOT>;
// store it
_state.storeFunctor(bestStat);
// add it to the checkpoint
checkpoint->add(*bestStat);
bestStat = new eoBestFitnessStat<EOT>;
// store it
_state.storeFunctor(bestStat);
// add it to the checkpoint
checkpoint->add(*bestStat);
}
// Average fitness alone
@ -110,11 +110,11 @@ eoCheckPoint<EOT>& do_make_checkpoint(eoParser& _parser, eoState& _state, eoEval
eoAverageStat<EOT> *averageStat = NULL; // do we need averageStat?
if ( plotBestParam.value() ) // we need it for gnuplot output
{
averageStat = new eoAverageStat<EOT>;
// store it
_state.storeFunctor(averageStat);
// add it to the checkpoint
checkpoint->add(*averageStat);
averageStat = new eoAverageStat<EOT>;
// store it
_state.storeFunctor(averageStat);
// add it to the checkpoint
checkpoint->add(*averageStat);
}
// Second moment stats: average and stdev
@ -122,11 +122,11 @@ eoCheckPoint<EOT>& do_make_checkpoint(eoParser& _parser, eoState& _state, eoEval
eoSecondMomentStats<EOT> *secondStat = NULL;
if ( printBestParam.value() ) // we need it for sreen output
{
secondStat = new eoSecondMomentStats<EOT>;
// store it
_state.storeFunctor(secondStat);
// add it to the checkpoint
checkpoint->add(*secondStat);
secondStat = new eoSecondMomentStats<EOT>;
// store it
_state.storeFunctor(secondStat);
// add it to the checkpoint
checkpoint->add(*secondStat);
}
@ -136,11 +136,11 @@ eoCheckPoint<EOT>& do_make_checkpoint(eoParser& _parser, eoState& _state, eoEval
eoValueParam<bool>& printPopParam = _parser.createParam(false, "printPop", "Print sorted pop. every gen.", '\0', "Output");
if ( printPopParam.value() ) // we do want pop dump
{
popStat = new eoSortedPopStat<EOT>("Dump of whole population");
// store it
_state.storeFunctor(popStat);
// add it to the checkpoint
checkpoint->add(*popStat);
popStat = new eoSortedPopStat<EOT>("Dump of whole population");
// store it
_state.storeFunctor(popStat);
// add it to the checkpoint
checkpoint->add(*popStat);
}
@ -152,14 +152,14 @@ eoCheckPoint<EOT>& do_make_checkpoint(eoParser& _parser, eoState& _state, eoEval
eoFDCStat<EOT> *fdcStat = NULL;
if ( printFDCParam.value() || plotFDCParam.value() ) // we need FDCStat
{
// need first an object to compute the distances - here Hamming dist.
eoQuadDistance<EOT> *dist = new eoQuadDistance<EOT>;
_state.storeFunctor(dist);
fdcStat = new eoFDCStat<EOT>(*dist);
// storeFunctor it
_state.storeFunctor(fdcStat);
// add it to the checkpoint
checkpoint->add(*fdcStat);
// need first an object to compute the distances - here Hamming dist.
eoQuadDistance<EOT> *dist = new eoQuadDistance<EOT>;
_state.storeFunctor(dist);
fdcStat = new eoFDCStat<EOT>(*dist);
// storeFunctor it
_state.storeFunctor(fdcStat);
// add it to the checkpoint
checkpoint->add(*fdcStat);
}
// do we wnat some histogram of fitnesses snpashots?
@ -170,95 +170,95 @@ eoCheckPoint<EOT>& do_make_checkpoint(eoParser& _parser, eoState& _state, eoEval
///////////////
// do we want an eoStdoutMonitor?
bool needStdoutMonitor = printBestParam.value() || printFDCParam.value()
|| printPopParam.value() ;
|| printPopParam.value() ;
// The Stdout monitor will print parameters to the screen ...
if ( needStdoutMonitor )
{
eoStdoutMonitor *monitor = new eoStdoutMonitor(false);
_state.storeFunctor(monitor);
eoStdoutMonitor *monitor = new eoStdoutMonitor(false);
_state.storeFunctor(monitor);
// when called by the checkpoint (i.e. at every generation)
checkpoint->add(*monitor);
// when called by the checkpoint (i.e. at every generation)
checkpoint->add(*monitor);
// the monitor will output a series of parameters: add them
monitor->add(*generationCounter);
if (useEvalParam.value()) // we want nb of evaluations
monitor->add(_eval);
if (printBestParam.value())
{
monitor->add(*bestStat);
monitor->add(*secondStat);
}
if (printFDCParam.value())
monitor->add(*fdcStat);
if ( printPopParam.value())
monitor->add(*popStat);
// the monitor will output a series of parameters: add them
monitor->add(*generationCounter);
if (useEvalParam.value()) // we want nb of evaluations
monitor->add(_eval);
if (printBestParam.value())
{
monitor->add(*bestStat);
monitor->add(*secondStat);
}
if (printFDCParam.value())
monitor->add(*fdcStat);
if ( printPopParam.value())
monitor->add(*popStat);
}
// first handle the dir test - if we need at least one file
if ( ( fileBestParam.value() || plotBestParam.value() ||
plotFDCParam.value() || plotHistogramParam.value() )
&& !dirOK ) // just in case we add something before
plotFDCParam.value() || plotHistogramParam.value() )
&& !dirOK ) // just in case we add something before
dirOK = testDirRes(dirNameParam.value(), eraseParam.value()); // TRUE
if (fileBestParam.value()) // A file monitor for best & secondMoment
{
std::string stmp = dirNameParam.value() + "/best.xg";
eoFileMonitor *fileMonitor = new eoFileMonitor(stmp);
// save and give to checkpoint
_state.storeFunctor(fileMonitor);
checkpoint->add(*fileMonitor);
// and feed with some statistics
fileMonitor->add(*generationCounter);
fileMonitor->add(_eval);
fileMonitor->add(*bestStat);
fileMonitor->add(*secondStat);
std::string stmp = dirNameParam.value() + "/best.xg";
eoFileMonitor *fileMonitor = new eoFileMonitor(stmp);
// save and give to checkpoint
_state.storeFunctor(fileMonitor);
checkpoint->add(*fileMonitor);
// and feed with some statistics
fileMonitor->add(*generationCounter);
fileMonitor->add(_eval);
fileMonitor->add(*bestStat);
fileMonitor->add(*secondStat);
}
if (plotBestParam.value()) // an eoGnuplot1DMonitor for best & average
{
std::string stmp = dirNameParam.value() + "_gnu_best.xg";
eoGnuplot1DMonitor *gnuMonitor = new eoGnuplot1DMonitor(stmp,minimizing_fitness<EOT>());
// save and give to checkpoint
_state.storeFunctor(gnuMonitor);
checkpoint->add(*gnuMonitor);
// and feed with some statistics
if (useEvalParam.value())
gnuMonitor->add(_eval);
else
gnuMonitor->add(*generationCounter);
gnuMonitor->add(*bestStat);
gnuMonitor->add(*averageStat);
std::string stmp = dirNameParam.value() + "_gnu_best.xg";
eoGnuplot1DMonitor *gnuMonitor = new eoGnuplot1DMonitor(stmp,minimizing_fitness<EOT>());
// save and give to checkpoint
_state.storeFunctor(gnuMonitor);
checkpoint->add(*gnuMonitor);
// and feed with some statistics
if (useEvalParam.value())
gnuMonitor->add(_eval);
else
gnuMonitor->add(*generationCounter);
gnuMonitor->add(*bestStat);
gnuMonitor->add(*averageStat);
}
if (plotFDCParam.value()) // a specific plot monitor for FDC
{
// first into a file (it adds everything ti itself
eoFDCFileSnapshot<EOT> *fdcFileSnapshot = new eoFDCFileSnapshot<EOT>(*fdcStat, dirNameParam.value());
_state.storeFunctor(fdcFileSnapshot);
// then to a Gnuplot monitor
eoGnuplot1DSnapshot *fdcGnuplot = new eoGnuplot1DSnapshot(*fdcFileSnapshot);
_state.storeFunctor(fdcGnuplot);
// first into a file (it adds everything ti itself
eoFDCFileSnapshot<EOT> *fdcFileSnapshot = new eoFDCFileSnapshot<EOT>(*fdcStat, dirNameParam.value());
_state.storeFunctor(fdcFileSnapshot);
// then to a Gnuplot monitor
eoGnuplot1DSnapshot *fdcGnuplot = new eoGnuplot1DSnapshot(*fdcFileSnapshot);
_state.storeFunctor(fdcGnuplot);
// and of course add them to the checkPoint
checkpoint->add(*fdcFileSnapshot);
checkpoint->add(*fdcGnuplot);
// and of course add them to the checkPoint
checkpoint->add(*fdcFileSnapshot);
checkpoint->add(*fdcGnuplot);
}
// historgram?
if (plotHistogramParam.value()) // want to see how the fitness is spread?
{
eoScalarFitnessStat<EOT> *fitStat = new eoScalarFitnessStat<EOT>;
_state.storeFunctor(fitStat);
checkpoint->add(*fitStat);
// a gnuplot-based monitor for snapshots: needs a dir name
eoGnuplot1DSnapshot *fitSnapshot = new eoGnuplot1DSnapshot(dirNameParam.value());
_state.storeFunctor(fitSnapshot);
// add any stat that is a std::vector<double> to it
fitSnapshot->add(*fitStat);
// and of course add it to the checkpoint
checkpoint->add(*fitSnapshot);
eoScalarFitnessStat<EOT> *fitStat = new eoScalarFitnessStat<EOT>;
_state.storeFunctor(fitStat);
checkpoint->add(*fitStat);
// a gnuplot-based monitor for snapshots: needs a dir name
eoGnuplot1DSnapshot *fitSnapshot = new eoGnuplot1DSnapshot(dirNameParam.value());
_state.storeFunctor(fitSnapshot);
// add any stat that is a std::vector<double> to it
fitSnapshot->add(*fitStat);
// and of course add it to the checkpoint
checkpoint->add(*fitSnapshot);
}
//////////////////////////////////
@ -273,7 +273,7 @@ eoCheckPoint<EOT>& do_make_checkpoint(eoParser& _parser, eoState& _state, eoEval
{
// first make sure dirName is OK
if (! dirOK )
dirOK = testDirRes(dirNameParam.value(), eraseParam.value()); // TRUE
dirOK = testDirRes(dirNameParam.value(), eraseParam.value()); // TRUE
unsigned freq = (saveFrequencyParam.value()>0 ? saveFrequencyParam.value() : UINT_MAX );
std::string stmp = dirNameParam.value() + "/generations";
@ -288,7 +288,7 @@ eoCheckPoint<EOT>& do_make_checkpoint(eoParser& _parser, eoState& _state, eoEval
{
// first make sure dirName is OK
if (! dirOK )
dirOK = testDirRes(dirNameParam.value(), eraseParam.value()); // TRUE
dirOK = testDirRes(dirNameParam.value(), eraseParam.value()); // TRUE
std::string stmp = dirNameParam.value() + "/time";
eoTimedStateSaver *stateSaver2 = new eoTimedStateSaver(saveTimeIntervalParam.value(), _state, stmp);

4
eo/src/do/make_checkpoint_assembled.h
View file

@ -49,7 +49,7 @@
bool testDirRes(std::string _dirName, bool _erase);
/////////////////// The checkpoint and other I/O //////////////
/** Of course, Fitness needs to be an eoScalarFitnessAssembled!!!
/** Of course, Fitness needs to be an eoScalarFitnessAssembled!!!
*
*
* @ingroup Builders
@ -153,7 +153,7 @@ eoCheckPoint<EOT>& do_make_checkpoint_assembled(eoParser& _parser, eoState& _sta
_state.storeFunctor(fitStat);
checkpoint->add(*fitStat);
#ifdef HAVE_GNUPLOT
// a gnuplot-based monitor for snapshots: needs a dir name
// a gnuplot-based monitor for snapshots: needs a dir name
eoGnuplot1DSnapshot *fitSnapshot = new eoGnuplot1DSnapshot(dirName);
_state.storeFunctor(fitSnapshot);
// add any stat that is a vector<double> to it

64
eo/src/do/make_continue.h
View file

@ -55,7 +55,7 @@ It can then be instantiated, and compiled on its own for a given EOType
template <class Indi>
eoCombinedContinue<Indi> * make_combinedContinue(eoCombinedContinue<Indi> *_combined, eoContinue<Indi> *_cont)
{
if (_combined) // already exists
if (_combined) // already exists
_combined->add(*_cont);
else
_combined = new eoCombinedContinue<Indi>(*_cont);
@ -81,10 +81,10 @@ eoContinue<Indi> & do_make_continue(eoParser& _parser, eoState& _state, eoEvalFu
if (maxGenParam.value()) // positive: -> define and store
{
eoGenContinue<Indi> *genCont = new eoGenContinue<Indi>(maxGenParam.value());
_state.storeFunctor(genCont);
// and "add" to combined
continuator = make_combinedContinue<Indi>(continuator, genCont);
eoGenContinue<Indi> *genCont = new eoGenContinue<Indi>(maxGenParam.value());
_state.storeFunctor(genCont);
// and "add" to combined
continuator = make_combinedContinue<Indi>(continuator, genCont);
}
// the steadyGen continue - only if user imput
@ -92,12 +92,12 @@ eoContinue<Indi> & do_make_continue(eoParser& _parser, eoState& _state, eoEvalFu
eoValueParam<unsigned>& minGenParam = _parser.createParam(unsigned(0), "minGen", "Minimum number of generations",'g', "Stopping criterion");
if (_parser.isItThere(steadyGenParam))
{
eoSteadyFitContinue<Indi> *steadyCont = new eoSteadyFitContinue<Indi>
(minGenParam.value(), steadyGenParam.value());
// store
_state.storeFunctor(steadyCont);
// add to combinedContinue
continuator = make_combinedContinue<Indi>(continuator, steadyCont);
eoSteadyFitContinue<Indi> *steadyCont = new eoSteadyFitContinue<Indi>
(minGenParam.value(), steadyGenParam.value());
// store
_state.storeFunctor(steadyCont);
// add to combinedContinue
continuator = make_combinedContinue<Indi>(continuator, steadyCont);
}
// Same thing with Eval - but here default value is 0
@ -108,10 +108,10 @@ eoContinue<Indi> & do_make_continue(eoParser& _parser, eoState& _state, eoEvalFu
if (maxEvalParam.value()) // positive: -> define and store
{
eoEvalContinue<Indi> *evalCont = new eoEvalContinue<Indi>(_eval, maxEvalParam.value());
_state.storeFunctor(evalCont);
// and "add" to combined
continuator = make_combinedContinue<Indi>(continuator, evalCont);
eoEvalContinue<Indi> *evalCont = new eoEvalContinue<Indi>(_eval, maxEvalParam.value());
_state.storeFunctor(evalCont);
// and "add" to combined
continuator = make_combinedContinue<Indi>(continuator, evalCont);
}
/*
// the steadyEval continue - only if user imput
@ -119,12 +119,12 @@ eoContinue<Indi> & do_make_continue(eoParser& _parser, eoState& _state, eoEvalFu
eoValueParam<unsigned>& minGenParam = _parser.createParam(unsigned(0), "minGen", "Minimum number of generations",'g', "Stopping criterion");
if (_parser.isItThere(steadyGenParam))
{
eoSteadyGenContinue<Indi> *steadyCont = new eoSteadyFitContinue<Indi>
(minGenParam.value(), steadyGenParam.value());
// store
_state.storeFunctor(steadyCont);
// add to combinedContinue
continuator = make_combinedContinue<Indi>(continuator, steadyCont);
eoSteadyGenContinue<Indi> *steadyCont = new eoSteadyFitContinue<Indi>
(minGenParam.value(), steadyGenParam.value());
// store
_state.storeFunctor(steadyCont);
// add to combinedContinue
continuator = make_combinedContinue<Indi>(continuator, steadyCont);
}
*/
// the target fitness
@ -132,12 +132,12 @@ eoContinue<Indi> & do_make_continue(eoParser& _parser, eoState& _state, eoEvalFu
eoValueParam<double>& targetFitnessParam = _parser.createParam(double(0.0), "targetFitness", "Stop when fitness reaches",'T', "Stopping criterion");
if (_parser.isItThere(targetFitnessParam))
{
fitCont = new eoFitContinue<Indi>
(targetFitnessParam.value());
// store
_state.storeFunctor(fitCont);
// add to combinedContinue
continuator = make_combinedContinue<Indi>(continuator, fitCont);
fitCont = new eoFitContinue<Indi>
(targetFitnessParam.value());
// store
_state.storeFunctor(fitCont);
// add to combinedContinue
continuator = make_combinedContinue<Indi>(continuator, fitCont);
}
#ifndef _MSC_VER
@ -146,11 +146,11 @@ eoContinue<Indi> & do_make_continue(eoParser& _parser, eoState& _state, eoEvalFu
eoValueParam<bool>& ctrlCParam = _parser.createParam(false, "CtrlC", "Terminate current generation upon Ctrl C",'C', "Stopping criterion");
if (ctrlCParam.value())
{
ctrlCCont = new eoCtrlCContinue<Indi>;
// store
_state.storeFunctor(ctrlCCont);
// add to combinedContinue
continuator = make_combinedContinue<Indi>(continuator, ctrlCCont);
ctrlCCont = new eoCtrlCContinue<Indi>;
// store
_state.storeFunctor(ctrlCCont);
// add to combinedContinue
continuator = make_combinedContinue<Indi>(continuator, ctrlCCont);
}
#endif

66
eo/src/do/make_general_replacement.h
View file

@ -3,7 +3,7 @@
//-----------------------------------------------------------------------------
// make_general_replacement.h
// (c) Marc Schoenauer and Pierre Collet, 2002
/*
/*
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
@ -49,8 +49,8 @@ eoReduce<EOT> & decode_reduce(eoParamParamType & _ppReduce, eoState & _state)
eoReduce<EOT> * ptReduce;
// ---------- Deterministic
if ( (_ppReduce.first == std::string("Deterministic")) ||
(_ppReduce.first == std::string("Sequential"))
if ( (_ppReduce.first == std::string("Deterministic")) ||
(_ppReduce.first == std::string("Sequential"))
)
{
ptReduce = new eoTruncate<EOT>;
@ -65,7 +65,7 @@ eoReduce<EOT> & decode_reduce(eoParamParamType & _ppReduce, eoState & _state)
// put back 6 in parameter for consistency (and status file)
_ppReduce.second.push_back(std::string("6"));
}
else // parameter passed by user as EP(T)
else // parameter passed by user as EP(T)
detSize = atoi(_ppReduce.second[0].c_str());
ptReduce = new eoEPReduce<EOT>(detSize);
}
@ -74,12 +74,12 @@ eoReduce<EOT> & decode_reduce(eoParamParamType & _ppReduce, eoState & _state)
{
if (!_ppReduce.second.size()) // no parameter added
{
std::cerr << "WARNING, no parameter passed to DetTour, using 2" << std::endl;
detSize = 2;
// put back 2 in parameter for consistency (and status file)
_ppReduce.second.push_back(std::string("2"));
std::cerr << "WARNING, no parameter passed to DetTour, using 2" << std::endl;
detSize = 2;
// put back 2 in parameter for consistency (and status file)
_ppReduce.second.push_back(std::string("2"));
}
else // parameter passed by user as DetTour(T)
else // parameter passed by user as DetTour(T)
detSize = atoi(_ppReduce.second[0].c_str());
ptReduce = new eoDetTournamentTruncate<EOT>(detSize);
}
@ -87,24 +87,24 @@ eoReduce<EOT> & decode_reduce(eoParamParamType & _ppReduce, eoState & _state)
{
double p;
if (!_ppReduce.second.size()) // no parameter added
{
std::cerr << "WARNING, no parameter passed to StochTour, using 1" << std::endl;
p = 1;
// put back p in parameter for consistency (and status file)
_ppReduce.second.push_back(std::string("1"));
}
else // parameter passed by user as DetTour(T)
{
p = atof(_ppReduce.second[0].c_str());
if ( (p<=0.5) || (p>1) )
throw std::runtime_error("Stochastic tournament size should be in [0.5,1]");
}
{
std::cerr << "WARNING, no parameter passed to StochTour, using 1" << std::endl;
p = 1;
// put back p in parameter for consistency (and status file)
_ppReduce.second.push_back(std::string("1"));
}
else // parameter passed by user as DetTour(T)
{
p = atof(_ppReduce.second[0].c_str());
if ( (p<=0.5) || (p>1) )
throw std::runtime_error("Stochastic tournament size should be in [0.5,1]");
}
ptReduce = new eoStochTournamentTruncate<EOT>(p);
}
else if ( (_ppReduce.first == std::string("Uniform")) ||
(_ppReduce.first == std::string("Random"))
)
else if ( (_ppReduce.first == std::string("Uniform")) ||
(_ppReduce.first == std::string("Random"))
)
{
ptReduce = new eoRandomReduce<EOT>;
}
@ -117,10 +117,10 @@ eoReduce<EOT> & decode_reduce(eoParamParamType & _ppReduce, eoState & _state)
return (*ptReduce);
}
/** Helper function that creates a replacement from the class
* eoReduceMergeReduce using 6 parameters
/** Helper function that creates a replacement from the class
* eoReduceMergeReduce using 6 parameters
* (after the usual eoState and eoParser)
*
*
* eoHowMany _elite the number of elite parents (0 = no elitism)
* see below
* bool _strongElitism if elite > 0, std::string elitism or weak elitism
@ -136,15 +136,15 @@ eoReduce<EOT> & decode_reduce(eoParamParamType & _ppReduce, eoState & _state)
*/
template <class EOT>
eoReplacement<EOT> & make_general_replacement(
eoParser& _parser, eoState& _state,
eoHowMany _elite = eoHowMany(0),
eoParser& _parser, eoState& _state,
eoHowMany _elite = eoHowMany(0),
bool _strongElitism = false,
eoHowMany _surviveParents = eoHowMany(0.0),
eoParamParamType & _reduceParentType = eoParamParamType("Deterministic"),
eoHowMany _surviveOffspring = eoHowMany(1.0),
eoParamParamType & _reduceOffspringType = eoParamParamType("Deterministic"),
eoParamParamType & _reduceFinalType = eoParamParamType("Deterministic")
)
)
{
/////////////////////////////////////////////////////
// the replacement
@ -157,14 +157,14 @@ eoReplacement<EOT> & make_general_replacement(
// reduce the parents
eoHowMany surviveParents = _parser.createParam(_surviveParents, "surviveParents", "Nb of surviving parents (percentage or absolute)", '\0', "Evolution Engine / Replacement").value();
eoParamParamType & reduceParentType = _parser.createParam(_reduceParentType, "reduceParents", "Parents reducer: Deterministic, EP(T), DetTour(T), StochTour(t), Uniform", '\0', "Evolution Engine / Replacement").value();
eoReduce<EOT> & reduceParent = decode_reduce<EOT>(reduceParentType, _state);
// reduce the offspring
eoHowMany surviveOffspring = _parser.createParam(_surviveOffspring, "surviveOffspring", "Nb of surviving offspring (percentage or absolute)", '\0', "Evolution Engine / Replacement").value();
eoParamParamType & reduceOffspringType = _parser.createParam(_reduceOffspringType, "reduceOffspring", "Offspring reducer: Deterministic, EP(T), DetTour(T), StochTour(t), Uniform", '\0', "Evolution Engine / Replacement").value();
eoReduce<EOT> & reduceOffspring = decode_reduce<EOT>(reduceOffspringType, _state);

20
eo/src/do/make_pop.h
View file

@ -59,7 +59,7 @@ eoPop<EOT>& do_make_pop(eoParser & _parser, eoState& _state, eoInit<EOT> & _ini
// random seed
eoValueParam<uint32_t>& seedParam = _parser.getORcreateParam(uint32_t(0), "seed", "Random number seed", 'S');
if (seedParam.value() == 0)
seedParam.value() = time(0);
seedParam.value() = time(0);
eoValueParam<unsigned>& popSize = _parser.getORcreateParam(unsigned(20), "popSize", "Population Size", 'P', "Evolution Engine");
// Either load or initialize
@ -82,17 +82,17 @@ eoPop<EOT>& do_make_pop(eoParser & _parser, eoState& _state, eoInit<EOT> & _ini
// the fitness is read in the file:
// do only evaluate the pop if the fitness has changed
if (recomputeFitnessParam.value())
{
for (unsigned i=0; i<pop.size(); i++)
pop[i].invalidate();
}
{
for (unsigned i=0; i<pop.size(); i++)
pop[i].invalidate();
}
if (pop.size() < popSize.value())
std::cerr << "WARNING, only " << pop.size() << " individuals read in file " << loadNameParam.value() << "\nThe remaining " << popSize.value() - pop.size() << " will be randomly drawn" << std::endl;
std::cerr << "WARNING, only " << pop.size() << " individuals read in file " << loadNameParam.value() << "\nThe remaining " << popSize.value() - pop.size() << " will be randomly drawn" << std::endl;
if (pop.size() > popSize.value())
{
std::cerr << "WARNING, Load file contained too many individuals. Only the best will be retained" << std::endl;
pop.resize(popSize.value());
}
{
std::cerr << "WARNING, Load file contained too many individuals. Only the best will be retained" << std::endl;
pop.resize(popSize.value());
}
}
else // nothing loaded from a file
{

2
eo/src/do/make_run.h
View file

@ -3,7 +3,7 @@
//-----------------------------------------------------------------------------
// make_run.h
// (c) Maarten Keijzer, Marc Schoenauer and GeNeura Team, 2001
/*
/*
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either

132
eo/src/eoCellularEasyEA.h
View file

@ -8,16 +8,16 @@
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Contact: cahon@lifl.fr
*/
@ -32,26 +32,26 @@
#include <eoOp.h>
/**
The abstract cellular easy algorithm.
The abstract cellular easy algorithm.
@ingroup Algorithms
*/
template <class EOT> class eoCellularEasyEA : public eoAlgo <EOT> {
public :
/**
Two constructors
*/
eoCellularEasyEA (eoContinue <EOT> & _cont, // Stop. criterion
eoEvalFunc <EOT> & _eval, // Evaluation function
eoSelectOne <EOT> & _sel_neigh, // To choose a partner
eoBinOp <EOT> & _cross, // Cross-over operator
eoMonOp <EOT> & _mut, // Mutation operator
eoSelectOne <EOT> & _sel_repl /* Which to keep between the new
child and the old individual ? */
) :
eoEvalFunc <EOT> & _eval, // Evaluation function
eoSelectOne <EOT> & _sel_neigh, // To choose a partner
eoBinOp <EOT> & _cross, // Cross-over operator
eoMonOp <EOT> & _mut, // Mutation operator
eoSelectOne <EOT> & _sel_repl /* Which to keep between the new
child and the old individual ? */
) :
cont (_cont),
eval (_eval),
popEval (_eval),
@ -60,18 +60,18 @@ public :
mut (_mut),
sel_child (eoSelectFirstOne ()),
sel_repl (_sel_repl) {
}
eoCellularEasyEA (eoContinue <EOT> & _cont,
eoEvalFunc <EOT> & _eval,
eoSelectOne <EOT> & _sel_neigh,
eoQuadOp <EOT> & _cross,
eoMonOp <EOT> & _mut,
eoSelectOne <EOT> & _sel_child, /* To choose one from
the both children */
eoSelectOne <EOT> & _sel_repl
) :
eoEvalFunc <EOT> & _eval,
eoSelectOne <EOT> & _sel_neigh,
eoQuadOp <EOT> & _cross,
eoMonOp <EOT> & _mut,
eoSelectOne <EOT> & _sel_child, /* To choose one from
the both children */
eoSelectOne <EOT> & _sel_repl
) :
cont (_cont),
eval (_eval),
popEval (_eval),
@ -80,7 +80,7 @@ public :
mut (_mut),
sel_child (_sel_child),
sel_repl (_sel_repl) {
}
/**
@ -88,55 +88,55 @@ public :
*/
void operator () (eoPop <EOT> & pop) {
do {
for (unsigned i = 0 ; i < pop.size () ; i ++) {
// Who are neighbouring to the current individual ?
eoPop <EOT> neigh = neighbours (pop, i) ;
// To select a partner
EOT part, old_sol = pop [i] ;
part = sel_neigh (neigh) ;
// To perform cross-over
cross (pop [i], part) ;
// Who are neighbouring to the current individual ?
eoPop <EOT> neigh = neighbours (pop, i) ;
// To perform mutation
mut (pop [i]) ;
mut (part) ;
pop [i].invalidate () ;
part.invalidate () ;
eval (pop [i]) ;
eval (part) ;
// To select a partner
EOT part, old_sol = pop [i] ;
part = sel_neigh (neigh) ;
// To choose one of the two children ...
eoPop <EOT> pop_loc ;
pop_loc.push_back (pop [i]) ;
pop_loc.push_back (part) ;
// To perform cross-over
cross (pop [i], part) ;
pop [i] = sel_child (pop_loc) ;
// To perform mutation
mut (pop [i]) ;
mut (part) ;
// To choose only one between the new made child and the old individual
pop_loc.clear () ;
pop_loc.push_back (pop [i]) ;
pop_loc.push_back (old_sol) ;
pop [i] = sel_repl (pop_loc) ;
pop [i].invalidate () ;
part.invalidate () ;
eval (pop [i]) ;
eval (part) ;
// To choose one of the two children ...
eoPop <EOT> pop_loc ;
pop_loc.push_back (pop [i]) ;
pop_loc.push_back (part) ;
pop [i] = sel_child (pop_loc) ;
// To choose only one between the new made child and the old individual
pop_loc.clear () ;
pop_loc.push_back (pop [i]) ;
pop_loc.push_back (old_sol) ;
pop [i] = sel_repl (pop_loc) ;
}
} while (cont (pop)) ;
}
protected :
virtual eoPop <EOT> neighbours (const eoPop <EOT> & pop, int rank) = 0 ;
private :
eoContinue <EOT> & cont ;
eoEvalFunc <EOT> & eval ;
eoPopLoopEval <EOT> popEval ;
@ -145,18 +145,18 @@ private :
eoMonOp <EOT> & mut ;
eoSelectOne <EOT> & sel_child ;
eoSelectOne <EOT> & sel_repl ;
class eoSelectFirstOne : public eoSelectOne <EOT> {
public :
const EOT & operator () (const eoPop <EOT> & pop) {
return pop [0] ;
return pop [0] ;
}
} ;
} ;
} ;
#endif

11
eo/src/eoCloneOps.h
View file

@ -2,7 +2,7 @@
//-----------------------------------------------------------------------------
// eoCloneOps.h
// (c) GeNeura Team, 1998
/*
/*
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
@ -18,7 +18,7 @@
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Contact: todos@geneura.ugr.es, http://geneura.ugr.es
CVS Info: $Date: 2003-02-27 19:26:09 $ $Header: /home/nojhan/dev/eodev/eodev_cvs/eo/src/eoCloneOps.h,v 1.2 2003-02-27 19:26:09 okoenig Exp $ $Author: okoenig $
CVS Info: $Date: 2003-02-27 19:26:09 $ $Header: /home/nojhan/dev/eodev/eodev_cvs/eo/src/eoCloneOps.h,v 1.2 2003-02-27 19:26:09 okoenig Exp $ $Author: okoenig $
*/
//-----------------------------------------------------------------------------
@ -29,9 +29,9 @@
/**
* The different null-variation operators (i.e. they do nothing)
*
* eoQuadCloneOp at least is useful to emulate the standard
* crossover(pCross) + mutation(pMut)
*
* eoQuadCloneOp at least is useful to emulate the standard
* crossover(pCross) + mutation(pMut)
* within the eoGenOp framework
* eoMonCloneOp will probably be useful as the copy operator
* eoBinCloneOp will certainly never been used - but let's be complete :-)
@ -80,4 +80,3 @@ virtual bool operator()(EOT& , EOT& ) {return false;}
#endif
/** @} */

7
eo/src/eoCombinedContinue.h
View file

@ -3,7 +3,7 @@
//-----------------------------------------------------------------------------
// eoCombinedContinue.h
// (c) Maarten Keijzer, GeNeura Team, 1999, 2000
/*
/*
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
@ -27,7 +27,7 @@
#include <eoContinue.h>
/**
/**
Combined continuators - logical AND:
Continues until one of the embedded continuators says halt!
@ -35,7 +35,7 @@
to be consistent with other Combined constructs
and allow to easily handle more than 2 continuators
02/2003 Ramón Casero Cañas - added the removeLast() method
02/2003 Ramón Casero Cañas - added the removeLast() method
@ingroup Combination
*/
@ -90,4 +90,3 @@ private:
};
#endif

9
eo/src/eoCombinedInit.h
View file

@ -3,7 +3,7 @@
//-----------------------------------------------------------------------------
// eoCombinedInit.h
// (c) Maarten Keijzer, GeNeura Team, Marc Schoenauer 2004
/*
/*
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
@ -27,7 +27,7 @@
#include <eoInit.h>
/**
/**
Combined INIT: a proportional recombination of eoInit objects
@ingroup Initializators
@ -49,7 +49,7 @@ public:
eo::log << eo::warnings << "WARNING: the use of the verbose parameter in eoCombinedInit::add is deprecated and will be removed in the next release." << std::endl;
add( _init, _rate );
}
/** The usual method to add objects to the combination
*/
void add(eoInit<EOT> & _init, double _rate)
@ -78,7 +78,7 @@ public:
virtual void operator() ( EOT & _eo )
{
unsigned what = rng.roulette_wheel(rates); // choose one op
(*initializers[what])(_eo); // apply it
(*initializers[what])(_eo); // apply it
return;
}
@ -90,4 +90,3 @@ std::vector<double> rates;
};
#endif

37
eo/src/eoConstrictedVariableWeightVelocity.h
View file

@ -56,9 +56,9 @@ public:
* @param _topology - The topology to get the global/local/other best
* @param _coeff - The constriction coefficient
* @param _weightUpdater - An eoWeightUpdater used to update the inertia weight
* @param _c1 - The first learning factor used for the particle's best. Type must be POT::ParticleVelocityType
* @param _c2 - The second learning factor used for the local/global best(s). Type must be POT::ParticleVelocityType
* @param _bounds - An eoRealBaseVectorBounds: real bounds for real velocities.
* @param _c1 - The first learning factor used for the particle's best. Type must be POT::ParticleVelocityType
* @param _c2 - The second learning factor used for the local/global best(s). Type must be POT::ParticleVelocityType
* @param _bounds - An eoRealBaseVectorBounds: real bounds for real velocities.
* If the velocities are not real, they won't be bounded by default. Should have a eoBounds ?
* @param _bndsModifier - An eoRealBoundModifier used to modify the bounds (for real bounds only).
* @param _gen - The eo random generator, default=rng
@ -85,9 +85,9 @@ public:
* @param _topology - The topology to get the global/local/other best
* @param _coeff - The constriction coefficient
* @param _weightUpdater - An eoWeightUpdater used to update the inertia weight
* @param _c1 - The first learning factor used for the particle's best. Type must be POT::ParticleVelocityType
* @param _c2 - The second learning factor used for the local/global best(s). Type must be POT::ParticleVelocityType
* @param _bounds - An eoRealBaseVectorBounds: real bounds for real velocities.
* @param _c1 - The first learning factor used for the particle's best. Type must be POT::ParticleVelocityType
* @param _c2 - The second learning factor used for the local/global best(s). Type must be POT::ParticleVelocityType
* @param _bounds - An eoRealBaseVectorBounds: real bounds for real velocities.
* If the velocities are not real, they won't be bounded by default. Should have a eoBounds ?
* @param _gen - The eo random generator, default=rng
*/
@ -112,8 +112,8 @@ public:
* @param _topology - The topology to get the global/local/other best*
* @param _coeff - The constriction coefficient
* @param _weightUpdater - An eoWeightUpdater used to update the inertia weight
* @param _c1 - The first learning factor used for the particle's best. Type must be POT::ParticleVelocityType
* @param _c2 - The second learning factor used for the local/global best(s). Type must be POT::ParticleVelocityType
* @param _c1 - The first learning factor used for the particle's best. Type must be POT::ParticleVelocityType
* @param _c2 - The second learning factor used for the local/global best(s). Type must be POT::ParticleVelocityType
* @param _gen - The eo random generator, default=rng
*/
eoConstrictedVariableWeightVelocity (eoTopology < POT > & _topology,
@ -134,7 +134,7 @@ public:
/**
* Evaluate the new velocities of the given particle. Need an indice to identify the particle
* into the topology. Steps are :
* into the topology. Steps are :
* - evaluate r1 and r2, the customed learning factors
* - adjust the size of the bounds (even if dummy)
* - update the weight with the weightUpdater (use the dummy updater if there's no updater provided)
@ -189,22 +189,21 @@ public:
protected:
eoTopology < POT > & topology;
const VelocityType & coeff; // the fixed constriction coefficient
eoWeightUpdater<VelocityType> & weightUpdater; // the updater used to make the weight evoluate
const VelocityType & c1; // learning factor 1
const VelocityType & c2; // learning factor 2
eoWeightUpdater<VelocityType> & weightUpdater; // the updater used to make the weight evoluate
const VelocityType & c1; // learning factor 1
const VelocityType & c2; // learning factor 2
eoRealVectorBounds & bounds; // REAL bounds even if the velocity could be of another type.
eoRealBoundModifier & bndsModifier;
VelocityType weight;
eoRng & gen; // the random generator
eoRng & gen; // the random generator
// If the bound modifier doesn't need to be used, use the dummy instance
eoDummyRealBoundModifier dummyModifier;
};
#endif /*EOCONSTRICTEDVARIABLEWEIGHTVELOCITY_H*/

35
eo/src/eoConstrictedVelocity.h
View file

@ -56,9 +56,9 @@ public:
/** Full constructor: Bounds and bound modifier required
* @param _topology - The topology to get the global/local/other best
* @param _coeff - The constriction coefficient
* @param _c1 - The first learning factor used for the particle's best. Type must be POT::ParticleVelocityType
* @param _c2 - The second learning factor used for the local/global best(s). Type must be POT::ParticleVelocityType
* @param _bounds - An eoRealBaseVectorBounds: real bounds for real velocities.
* @param _c1 - The first learning factor used for the particle's best. Type must be POT::ParticleVelocityType
* @param _c2 - The second learning factor used for the local/global best(s). Type must be POT::ParticleVelocityType
* @param _bounds - An eoRealBaseVectorBounds: real bounds for real velocities.
* If the velocities are not real, they won't be bounded by default. Should have a eoBounds ?
* @param _bndsModifier - An eoRealBoundModifier used to modify the bounds (for real bounds only).
* @param _gen - The eo random generator, default=rng
@ -82,9 +82,9 @@ public:
/** Constructor: No bound updater required <-> fixed bounds
* @param _topology - The topology to get the global/local/other best
* @param _coeff - The constriction coefficient
* @param _c1 - The first learning factor used for the particle's best. Type must be POT::ParticleVelocityType
* @param _c2 - The second learning factor used for the local/global best(s). Type must be POT::ParticleVelocityType
* @param _bounds - An eoRealBaseVectorBounds: real bounds for real velocities.
* @param _c1 - The first learning factor used for the particle's best. Type must be POT::ParticleVelocityType
* @param _c2 - The second learning factor used for the local/global best(s). Type must be POT::ParticleVelocityType
* @param _bounds - An eoRealBaseVectorBounds: real bounds for real velocities.
* If the velocities are not real, they won't be bounded by default. Should have a eoBounds ?
* @param _gen - The eo random generator, default=rng
*/
@ -106,8 +106,8 @@ public:
/** Constructor: Neither bounds nor bound updater required <-> free velocity
* @param _topology - The topology to get the global/local/other best
* @param _coeff - The constriction coefficient
* @param _c1 - The first learning factor used for the particle's best. Type must be POT::ParticleVelocityType
* @param _c2 - The second learning factor used for the local/global best(s). Type must be POT::ParticleVelocityType
* @param _c1 - The first learning factor used for the particle's best. Type must be POT::ParticleVelocityType
* @param _c2 - The second learning factor used for the local/global best(s). Type must be POT::ParticleVelocityType
* @param _gen - The eo random generator, default=rng
*/
eoConstrictedVelocity (eoTopology < POT > & _topology,
@ -126,7 +126,7 @@ public:
/**
* Evaluate the new velocities of the given particle. Need an indice to identify the particle
* into the topology. Steps are :
* into the topology. Steps are :
* - evaluate r1 and r2, the customed learning factors
* - adjust the size of the bounds (even if dummy)
* - modify the bounds with the bounds modifier (use the dummy modifier if there's no modifier provided)
@ -173,20 +173,20 @@ public:
topology.updateNeighborhood(_po,_indice);
}
//! eoTopology<POT> getTopology
//! eoTopology<POT> getTopology
//! @return topology
eoTopology<POT> & getTopology ()
{
return topology;
}
eoTopology<POT> & getTopology ()
{
return topology;
}
protected:
eoTopology < POT > & topology;
const VelocityType & c1; // learning factor 1
const VelocityType & c2; // learning factor 2
const VelocityType & c1; // learning factor 1
const VelocityType & c2; // learning factor 2
const VelocityType & coeff; // the fixed constriction coefficient
eoRng & gen; // the random generator
eoRng & gen; // the random generator
eoRealVectorBounds & bounds; // REAL bounds even if the velocity could be of another type.
eoRealBoundModifier & bndsModifier;
@ -197,4 +197,3 @@ protected:
#endif /*EOCONSTRICTEDVELOCITY_H */

11
eo/src/eoContinue.h
View file

@ -3,7 +3,7 @@
//-----------------------------------------------------------------------------
// eoContinue.h
// (c) Maarten Keijzer, Geneura Team, 1999, 2000
/*
/*
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
@ -31,7 +31,7 @@
/** @defgroup Continuators Stopping criteria
*
* A stopping criterion is called a "continue". This is a functor that is called at each generation end
* A stopping criterion is called a "continue". This is a functor that is called at each generation end
* and that return true if one should stop the search.
*
* @ingroup Utilities
@ -39,13 +39,13 @@
/** Termination condition for the genetic algorithm
* Takes the population as input, returns true for continue,
* false for termination
* false for termination
*
* @ingroup Continuators
* @ingroup Core
*/
template< class EOT>
class eoContinue : public eoUF<const eoPop<EOT>&, bool>, public eoPersistent
class eoContinue : public eoUF<const eoPop<EOT>&, bool>, public eoPersistent
{
public:
virtual std::string className(void) const { return "eoContinue"; }
@ -57,7 +57,7 @@ public:
(void)__is;
/* It should be implemented by subclasses ! */
}
/** Print on a stream
* @param __os ostream to print on
*/
@ -68,4 +68,3 @@ public:
};
#endif

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