nojhan/paradiseo
1
0
Fork 0
Code Issues Pull requests Projects Releases Packages Wiki Activity

test K-Hamming distances using One Max problem

Browse source 
git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@2275 331e1502-861f-0410-8da2-ba01fb791d7f
This commit is contained in:
boufaras 2011-05-25 21:56:13 +00:00
commit 55627d0377
4 changed files with 496 additions and 3 deletions
Download patch file Download diff file Expand all files Collapse all files

7
branches/ParadisEO-GPU/tutoriel/Kswap-OneMax/CMakeLists.txt
View file

@ -41,10 +41,11 @@ LINK_DIRECTORIES(${PARADISEO_EO_BIN_DIR}/lib ${NVIDIA_LIB_DIR} ${CUDA_LIB_DIR}
### 3) Define your targets and link the librairies ### 3) Define your targets and link the librairies
###################################################################################### ######################################################################################
CUDA_ADD_EXECUTABLE(CutestKswapHC testKswapHC.cu) CUDA_ADD_EXECUTABLE(GPUtestKswapHCByModif testKswapHCByCpy.cu)
CUDA_ADD_EXECUTABLE(GPUtestKswapHCByCpy testKswapHCByCpy.cu)
TARGET_LINK_LIBRARIES(GPUtestKswapHCByModif eoutils ga eo ${cutil})
TARGET_LINK_LIBRARIES(CutestKswapHC eoutils ga eo ${cutil}) TARGET_LINK_LIBRARIES(GPUtestKswapHCByCpy eoutils ga eo ${cutil})

50
branches/ParadisEO-GPU/tutoriel/Kswap-OneMax/moGPUConfig.h Normal file
View file

@ -0,0 +1,50 @@
/*
<moGPUConfig.h>
Copyright (C) DOLPHIN Project-Team, INRIA Lille - Nord Europe, 2006-2010
Karima Boufaras, Thé Van LUONG
This software is governed by the CeCILL license under French law and
abiding by the rules of distribution of free software. You can use,
modify and/ or redistribute the software under the terms of the CeCILL
license as circulated by CEA, CNRS and INRIA at the following URL
"http://www.cecill.info".
As a counterpart to the access to the source code and rights to copy,
modify and redistribute granted by the license, users are provided only
with a limited warranty and the software's author, the holder of the
economic rights, and the successive licensors have only limited liability.
In this respect, the user's attention is drawn to the risks associated
with loading, using, modifying and/or developing or reproducing the
software by the user in light of its specific status of free software,
that may mean that it is complicated to manipulate, and that also
therefore means that it is reserved for developers and experienced
professionals having in-depth computer knowledge. Users are therefore
encouraged to load and test the software's suitability as regards their
requirements in conditions enabling the security of their systems and/or
data to be ensured and, more generally, to use and operate it in the
same conditions as regards security.
The fact that you are presently reading this means that you have had
knowledge of the CeCILL license and that you accept its terms.
ParadisEO WebSite : http://paradiseo.gforge.inria.fr
Contact: paradiseo-help@lists.gforge.inria.fr
*/
#ifndef __moGPUConfig_H
#define __moGPUConfig_H
#define BLOCK_SIZE 8
#ifndef NB_POS
#define NB_POS 2
#endif
#ifndef SIZE
#define SIZE 100
#endif
#endif

221
branches/ParadisEO-GPU/tutoriel/Kswap-OneMax/testKswapHCByCpy.cu Normal file
View file

@ -0,0 +1,221 @@
/*
<testKswapHC.cu>
Copyright (C) DOLPHIN Project-Team, INRIA Lille - Nord Europe, 2006-2010
Karima Boufaras, Thé Van LUONG
This software is governed by the CeCILL license under French law and
abiding by the rules of distribution of free software. You can use,
modify and/ or redistribute the software under the terms of the CeCILL
license as circulated by CEA, CNRS and INRIA at the following URL
"http://www.cecill.info".
As a counterpart to the access to the source code and rights to copy,
modify and redistribute granted by the license, users are provided only
with a limited warranty and the software's author, the holder of the
economic rights, and the successive licensors have only limited liability.
In this respect, the user's attention is drawn to the risks associated
with loading, using, modifying and/or developing or reproducing the
software by the user in light of its specific status of free software,
that may mean that it is complicated to manipulate, and that also
therefore means that it is reserved for developers and experienced
professionals having in-depth computer knowledge. Users are therefore
encouraged to load and test the software's suitability as regards their
requirements in conditions enabling the security of their systems and/or
data to be ensured and, more generally, to use and operate it in the
same conditions as regards security.
The fact that you are presently reading this means that you have had
knowledge of the CeCILL license and that you accept its terms.
ParadisEO WebSite : http://paradiseo.gforge.inria.fr
Contact: paradiseo-help@lists.gforge.inria.fr
*/
#include <iostream>
#include <stdlib.h>
using namespace std;
//Include GPU Config File
#include "moGPUConfig.h"
// The general include for eo
#include <eo>
#include <ga.h>
// OneMax full eval function
#include <problems/eval/EvalOneMax.h>
// OneMax incremental eval function
#include <eval/moGPUMappingEvalByCpy.h>
#include <problems/eval/OneMaxIncrEval.h>
// One Max solution
#include <GPUType/moGPUBitVector.h>
// One Max neighbor
#include <neighborhood/moGPUXBitFlippingNeighbor.h>
//To compute execution time
#include <performance/moGPUTimer.h>
//Utils to compute size Mapping of x-change position
#include <neighborhood/moNeighborhoodSizeUtils.h>
// Use an ordered neighborhood without mapping, with local copy of solution
#include <neighborhood/moGPUXChangeNeighborhoodByCpy.h>
// The Solution and neighbor comparator
#include <comparator/moNeighborComparator.h>
#include <comparator/moSolNeighborComparator.h>
// The continuator
#include <continuator/moTrueContinuator.h>
// Local search algorithm
#include <algo/moLocalSearch.h>
// The simple HC algorithm explorer
#include <explorer/moSimpleHCexplorer.h>
// REPRESENTATION
typedef moGPUBitVector<eoMaximizingFitness> solution;
typedef moGPUXBitFlippingNeighbor<eoMaximizingFitness> Neighbor;
typedef moGPUXChangeNeighborhoodByCpy<Neighbor> Neighborhood;
void main_function(int argc, char **argv)
{
/* =========================================================
*
* Parameters
*
* ========================================================= */
// First define a parser from the command-line arguments
eoParser parser(argc, argv);
// For each parameter, define Parameter, read it through the parser,
// and assign the value to the variable
// seed
eoValueParam<uint32_t> seedParam(time(0), "seed", "Random number seed", 'S');
parser.processParam( seedParam );
unsigned seed = seedParam.value();
// description of genotype
eoValueParam<unsigned int> vecSizeParam(100, "vecSize", "Genotype size", 'V');
parser.processParam( vecSizeParam, "Representation" );
unsigned vecSize = vecSizeParam.value();
//Number of position to change
eoValueParam<unsigned int> nbPosParam(1, "nbPos", "X Change", 'N');
parser.processParam( nbPosParam, "Exchange" );
unsigned nbPos = nbPosParam.value();
// the name of the "status" file where all actual parameter values will be saved
string str_status = parser.ProgramName() + ".status"; // default value
eoValueParam<string> statusParam(str_status.c_str(), "status", "Status file");
parser.processParam( statusParam, "Persistence" );
// do the following AFTER ALL PARAMETERS HAVE BEEN PROCESSED
// i.e. in case you need parameters somewhere else, postpone these
if (parser.userNeedsHelp()) {
parser.printHelp(cout);
exit(1);
}
if (statusParam.value() != "") {
ofstream os(statusParam.value().c_str());
os << parser;// and you can use that file as parameter file
}
/* =========================================================
*
* Random seed
*
* ========================================================= */
//reproducible random seed: if you don't change SEED above,
// you'll aways get the same result, NOT a random run
rng.reseed(seed);
/* =========================================================
*
* Initilisation of the solution
*
* ========================================================= */
solution sol(vecSize);
/* =========================================================
*
* Eval fitness function
*
* ========================================================= */
EvalOneMax<solution> eval;
/* =========================================================
*
* Evaluation of a solution neighbor's
*
* ========================================================= */
unsigned long int sizeMap=sizeMapping(vecSize,NB_POS);
OneMaxIncrEval<Neighbor> incr_eval;
moGPUMappingEvalByCpy<Neighbor,OneMaxIncrEval<Neighbor> > cueval(sizeMap,incr_eval);
/* =========================================================
*
* Comparator of solutions and neighbors
*
* ========================================================= */
moNeighborComparator<Neighbor> comparator;
moSolNeighborComparator<Neighbor> solComparator;
/* =========================================================
*
* a solution neighborhood
*
* ========================================================= */
Neighborhood neighborhood(sizeMap,NB_POS,cueval);
/* =========================================================
*
* An explorer of solution neighborhood's
*
* ========================================================= */
moSimpleHCexplorer<Neighbor> explorer(neighborhood, cueval,
comparator, solComparator);
/* =========================================================
*
* The local search algorithm
*
* ========================================================= */
//True continuator <=> Always continue
moTrueContinuator<Neighbor> continuator;
moLocalSearch<Neighbor> localSearch(explorer,continuator, eval);
/* =========================================================
*
* Execute the local search from random sollution
*
* ========================================================= */
//Can be eval here, else it will be done at the beginning of the localSearch
eval(sol);
std::cout << "initial: " << sol<< std::endl;
// Create timer for timing CUDA calculation
moGPUTimer timer;
timer.start();
localSearch(sol);
timer.stop();
std::cout << "final: " << sol<< std::endl;
printf("Execution time = %f ms\n",timer.getTime());
timer.deleteTimer();
}
// A main that catches the exceptions
int main(int argc, char **argv)
{
try{
main_function(argc, argv);
}
catch(exception& e){
cout << "Exception: " << e.what() << '\n';
}
return 1;
}

221
branches/ParadisEO-GPU/tutoriel/Kswap-OneMax/testKswapHCByModif.cu Normal file
View file

@ -0,0 +1,221 @@
/*
<testKswapHC.cu>
Copyright (C) DOLPHIN Project-Team, INRIA Lille - Nord Europe, 2006-2010
Karima Boufaras, Thé Van LUONG
This software is governed by the CeCILL license under French law and
abiding by the rules of distribution of free software. You can use,
modify and/ or redistribute the software under the terms of the CeCILL
license as circulated by CEA, CNRS and INRIA at the following URL
"http://www.cecill.info".
As a counterpart to the access to the source code and rights to copy,
modify and redistribute granted by the license, users are provided only
with a limited warranty and the software's author, the holder of the
economic rights, and the successive licensors have only limited liability.
In this respect, the user's attention is drawn to the risks associated
with loading, using, modifying and/or developing or reproducing the
software by the user in light of its specific status of free software,
that may mean that it is complicated to manipulate, and that also
therefore means that it is reserved for developers and experienced
professionals having in-depth computer knowledge. Users are therefore
encouraged to load and test the software's suitability as regards their
requirements in conditions enabling the security of their systems and/or
data to be ensured and, more generally, to use and operate it in the
same conditions as regards security.
The fact that you are presently reading this means that you have had
knowledge of the CeCILL license and that you accept its terms.
ParadisEO WebSite : http://paradiseo.gforge.inria.fr
Contact: paradiseo-help@lists.gforge.inria.fr
*/
#include <iostream>
#include <stdlib.h>
using namespace std;
//Include GPU Config File
#include "moGPUConfig.h"
// The general include for eo
#include <eo>
#include <ga.h>
// OneMax full eval function
#include <problems/eval/EvalOneMax.h>
// OneMax incremental eval function
#include <eval/moGPUMappingEvalByModif.h>
#include <problems/eval/OneMaxIncrEval.h>
// One Max solution
#include <GPUType/moGPUBitVector.h>
// One Max neighbor
#include <neighborhood/moGPUXBitFlippingNeighbor.h>
//To compute execution time
#include <performance/moGPUTimer.h>
//Utils to compute size Mapping of x-change position
#include <neighborhood/moNeighborhoodSizeUtils.h>
// One Max ordered neighborhood
#include <neighborhood/moGPUXChangeNeighborhoodByModif.h>
// The Solution and neighbor comparator
#include <comparator/moNeighborComparator.h>
#include <comparator/moSolNeighborComparator.h>
// The continuator
#include <continuator/moTrueContinuator.h>
// Local search algorithm
#include <algo/moLocalSearch.h>
// The simple HC algorithm explorer
#include <explorer/moSimpleHCexplorer.h>
// REPRESENTATION
typedef moGPUBitVector<eoMaximizingFitness> solution;
typedef moGPUXBitFlippingNeighbor<eoMaximizingFitness> Neighbor;
typedef moGPUXChangeNeighborhoodByModif<Neighbor> Neighborhood;
void main_function(int argc, char **argv)
{
/* =========================================================
*
* Parameters
*
* ========================================================= */
// First define a parser from the command-line arguments
eoParser parser(argc, argv);
// For each parameter, define Parameter, read it through the parser,
// and assign the value to the variable
// seed
eoValueParam<uint32_t> seedParam(time(0), "seed", "Random number seed", 'S');
parser.processParam( seedParam );
unsigned seed = seedParam.value();
// description of genotype
eoValueParam<unsigned int> vecSizeParam(100, "vecSize", "Genotype size", 'V');
parser.processParam( vecSizeParam, "Representation" );
unsigned vecSize = vecSizeParam.value();
//Number of position to change
eoValueParam<unsigned int> nbPosParam(1, "nbPos", "X Change", 'N');
parser.processParam( nbPosParam, "Exchange" );
unsigned nbPos = nbPosParam.value();
// the name of the "status" file where all actual parameter values will be saved
string str_status = parser.ProgramName() + ".status"; // default value
eoValueParam<string> statusParam(str_status.c_str(), "status", "Status file");
parser.processParam( statusParam, "Persistence" );
// do the following AFTER ALL PARAMETERS HAVE BEEN PROCESSED
// i.e. in case you need parameters somewhere else, postpone these
if (parser.userNeedsHelp()) {
parser.printHelp(cout);
exit(1);
}
if (statusParam.value() != "") {
ofstream os(statusParam.value().c_str());
os << parser;// and you can use that file as parameter file
}
/* =========================================================
*
* Random seed
*
* ========================================================= */
//reproducible random seed: if you don't change SEED above,
// you'll aways get the same result, NOT a random run
rng.reseed(seed);
/* =========================================================
*
* Initilisation of the solution
*
* ========================================================= */
solution sol(vecSize);
/* =========================================================
*
* Eval fitness function
*
* ========================================================= */
EvalOneMax<solution> eval;
/* =========================================================
*
* Evaluation of a solution neighbor's
*
* ========================================================= */
unsigned long int sizeMap=sizeMapping(vecSize,NB_POS);
OneMaxIncrEval<Neighbor> incr_eval;
moGPUMappingEvalByModif<Neighbor,OneMaxIncrEval<Neighbor> > cueval(sizeMap,incr_eval);
/* =========================================================
*
* Comparator of solutions and neighbors
*
* ========================================================= */
moNeighborComparator<Neighbor> comparator;
moSolNeighborComparator<Neighbor> solComparator;
/* =========================================================
*
* a solution neighborhood
*
* ========================================================= */
Neighborhood neighborhood(sizeMap,NB_POS,cueval);
/* =========================================================
*
* An explorer of solution neighborhood's
*
* ========================================================= */
moSimpleHCexplorer<Neighbor> explorer(neighborhood, cueval,
comparator, solComparator);
/* =========================================================
*
* The local search algorithm
*
* ========================================================= */
//True continuator <=> Always continue
moTrueContinuator<Neighbor> continuator;
moLocalSearch<Neighbor> localSearch(explorer,continuator, eval);
/* =========================================================
*
* Execute the local search from random sollution
*
* ========================================================= */
//Can be eval here, else it will be done at the beginning of the localSearch
eval(sol);
std::cout << "initial: " << sol<< std::endl;
// Create timer for timing CUDA calculation
moGPUTimer timer;
timer.start();
localSearch(sol);
timer.stop();
std::cout << "final: " << sol<< std::endl;
printf("Execution time = %f ms\n",timer.getTime());
timer.deleteTimer();
}
// A main that catches the exceptions
int main(int argc, char **argv)
{
try{
main_function(argc, argv);
}
catch(exception& e){
cout << "Exception: " << e.what() << '\n';
}
return 1;
}