git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1336 331e1502-861f-0410-8da2-ba01fb791d7f
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INCLUDES = -I$(top_srcdir)/. -I$(top_srcdir)/eo -I$(top_srcdir)/mo \
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-I$(top_srcdir)/moeo -I$(top_srcdir)/moeo/core
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METASOURCES = AUTO
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bin_PROGRAMS = PhyloMOEA
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PhyloMOEA_SOURCES = ExceptionManager.h Patterns.h PhyloMOEA.cpp ProbMatrix.cpp \
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ProbMatrix.h RandomNr.cpp RandomNr.h Sequences.cpp Sequences.h SubsModel.cpp \
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SubsModel.h eigensolver.cpp eigensolver.h likelihoodcalculator.cpp \
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likelihoodcalculator.h likoptimizer.cpp likoptimizer.h matrixutils.cpp matrixutils.h \
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parsimonycalculator.cpp parsimonycalculator.h phylotreeIND.cpp phylotreeIND.h \
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probmatrixcontainer.cpp probmatrixcontainer.h treeIterator.cpp treeIterator.h tree_limits.h \
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utils.cpp
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PhyloMOEA_LDADD = $(top_builddir)/moeo/core/libmoeo.la \
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$(top_builddir)/eo/utils/libutils.la $(top_builddir)/eo/ga/libga.la $(top_builddir)/eo/libeo.la -lGTL -lgsl \
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-lgslcblas
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noinst_HEADERS = PhyloMOEOProbMatrixContainerUpdater.h moeoObjVecStat.h \
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vectorSortIndex.h
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_SOURCES = PhyloMOEO.h
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_SOURCES = PhyloMOEO.h PhyloMOEO_operators.h
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_SOURCES = PhyloMOEO.h PhyloMOEO_init.h PhyloMOEO_operators.h
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_SOURCES = PhyloMOEO.h PhyloMOEO_eval.h PhyloMOEO_init.h PhyloMOEO_operators.h
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_SOURCES = PhyloMOEO.h PhyloMOEO_eval.h PhyloMOEO_init.h PhyloMOEO_operators.h \
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utils.h
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_SOURCES = moeoPtrComparator.h
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_SOURCES = PhyloMOEO_archive.h
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_SOURCES = PhyloMOEOPartitionStat.h PhyloMOEO_archive.h
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-I$(top_srcdir)/moeo -I$(top_srcdir)/moeo/core
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METASOURCES = AUTO
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PhyloMOEA_SOURCES = ExceptionManager.h Patterns.h PhyloMOEA.cpp ProbMatrix.cpp \
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ProbMatrix.h RandomNr.cpp RandomNr.h Sequences.cpp Sequences.h SubsModel.cpp \
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SubsModel.h eigensolver.cpp eigensolver.h likelihoodcalculator.cpp \
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likelihoodcalculator.h likoptimizer.cpp likoptimizer.h matrixutils.cpp matrixutils.h \
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parsimonycalculator.cpp parsimonycalculator.h phylotreeIND.cpp phylotreeIND.h \
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probmatrixcontainer.cpp probmatrixcontainer.h treeIterator.cpp treeIterator.h tree_limits.h \
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utils.cpp
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PhyloMOEA_LDADD = $(top_builddir)/moeo/core/libmoeo.la \
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$(top_builddir)/eo/utils/libutils.la $(top_builddir)/eo/ga/libga.la $(top_builddir)/eo/libeo.la -lGTL -lgsl \
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vectorSortIndex.h
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||||||
PhyloMOEA$(EXEEXT): $(PhyloMOEA_OBJECTS) $(PhyloMOEA_DEPENDENCIES)
|
|
||||||
@rm -f PhyloMOEA$(EXEEXT)
|
|
||||||
$(CXXLINK) $(PhyloMOEA_OBJECTS) $(PhyloMOEA_LDADD) $(LIBS)
|
|
||||||
|
|
||||||
mostlyclean-compile:
|
|
||||||
-rm -f *.$(OBJEXT)
|
|
||||||
|
|
||||||
distclean-compile:
|
|
||||||
-rm -f *.tab.c
|
|
||||||
|
|
||||||
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/PhyloMOEA.Po@am__quote@
|
|
||||||
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/ProbMatrix.Po@am__quote@
|
|
||||||
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/RandomNr.Po@am__quote@
|
|
||||||
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/Sequences.Po@am__quote@
|
|
||||||
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/SubsModel.Po@am__quote@
|
|
||||||
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/eigensolver.Po@am__quote@
|
|
||||||
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/likelihoodcalculator.Po@am__quote@
|
|
||||||
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/likoptimizer.Po@am__quote@
|
|
||||||
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/matrixutils.Po@am__quote@
|
|
||||||
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/parsimonycalculator.Po@am__quote@
|
|
||||||
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/phylotreeIND.Po@am__quote@
|
|
||||||
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/probmatrixcontainer.Po@am__quote@
|
|
||||||
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/treeIterator.Po@am__quote@
|
|
||||||
@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/utils.Po@am__quote@
|
|
||||||
|
|
||||||
.cpp.o:
|
|
||||||
@am__fastdepCXX_TRUE@ $(CXXCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<
|
|
||||||
@am__fastdepCXX_TRUE@ mv -f $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
|
|
||||||
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
|
|
||||||
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
|
|
||||||
@am__fastdepCXX_FALSE@ $(CXXCOMPILE) -c -o $@ $<
|
|
||||||
|
|
||||||
.cpp.obj:
|
|
||||||
@am__fastdepCXX_TRUE@ $(CXXCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'`
|
|
||||||
@am__fastdepCXX_TRUE@ mv -f $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
|
|
||||||
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
|
|
||||||
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
|
|
||||||
@am__fastdepCXX_FALSE@ $(CXXCOMPILE) -c -o $@ `$(CYGPATH_W) '$<'`
|
|
||||||
|
|
||||||
.cpp.lo:
|
|
||||||
@am__fastdepCXX_TRUE@ $(LTCXXCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<
|
|
||||||
@am__fastdepCXX_TRUE@ mv -f $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo
|
|
||||||
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@
|
|
||||||
@AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
|
|
||||||
@am__fastdepCXX_FALSE@ $(LTCXXCOMPILE) -c -o $@ $<
|
|
||||||
|
|
||||||
mostlyclean-libtool:
|
|
||||||
-rm -f *.lo
|
|
||||||
|
|
||||||
clean-libtool:
|
|
||||||
-rm -rf .libs _libs
|
|
||||||
|
|
||||||
ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES)
|
|
||||||
list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
|
|
||||||
unique=`for i in $$list; do \
|
|
||||||
if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
|
|
||||||
done | \
|
|
||||||
$(AWK) '{ files[$$0] = 1; nonemtpy = 1; } \
|
|
||||||
END { if (nonempty) { for (i in files) print i; }; }'`; \
|
|
||||||
mkid -fID $$unique
|
|
||||||
tags: TAGS
|
|
||||||
|
|
||||||
TAGS: $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \
|
|
||||||
$(TAGS_FILES) $(LISP)
|
|
||||||
tags=; \
|
|
||||||
here=`pwd`; \
|
|
||||||
list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
|
|
||||||
unique=`for i in $$list; do \
|
|
||||||
if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
|
|
||||||
done | \
|
|
||||||
$(AWK) '{ files[$$0] = 1; nonempty = 1; } \
|
|
||||||
END { if (nonempty) { for (i in files) print i; }; }'`; \
|
|
||||||
if test -z "$(ETAGS_ARGS)$$tags$$unique"; then :; else \
|
|
||||||
test -n "$$unique" || unique=$$empty_fix; \
|
|
||||||
$(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
|
|
||||||
$$tags $$unique; \
|
|
||||||
fi
|
|
||||||
ctags: CTAGS
|
|
||||||
CTAGS: $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \
|
|
||||||
$(TAGS_FILES) $(LISP)
|
|
||||||
tags=; \
|
|
||||||
list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
|
|
||||||
unique=`for i in $$list; do \
|
|
||||||
if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
|
|
||||||
done | \
|
|
||||||
$(AWK) '{ files[$$0] = 1; nonempty = 1; } \
|
|
||||||
END { if (nonempty) { for (i in files) print i; }; }'`; \
|
|
||||||
test -z "$(CTAGS_ARGS)$$tags$$unique" \
|
|
||||||
|| $(CTAGS) $(CTAGSFLAGS) $(AM_CTAGSFLAGS) $(CTAGS_ARGS) \
|
|
||||||
$$tags $$unique
|
|
||||||
|
|
||||||
GTAGS:
|
|
||||||
here=`$(am__cd) $(top_builddir) && pwd` \
|
|
||||||
&& cd $(top_srcdir) \
|
|
||||||
&& gtags -i $(GTAGS_ARGS) $$here
|
|
||||||
|
|
||||||
distclean-tags:
|
|
||||||
-rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
|
|
||||||
|
|
||||||
distdir: $(DISTFILES)
|
|
||||||
@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
|
|
||||||
topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
|
|
||||||
list='$(DISTFILES)'; \
|
|
||||||
dist_files=`for file in $$list; do echo $$file; done | \
|
|
||||||
sed -e "s|^$$srcdirstrip/||;t" \
|
|
||||||
-e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
|
|
||||||
case $$dist_files in \
|
|
||||||
*/*) $(MKDIR_P) `echo "$$dist_files" | \
|
|
||||||
sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
|
|
||||||
sort -u` ;; \
|
|
||||||
esac; \
|
|
||||||
for file in $$dist_files; do \
|
|
||||||
if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
|
|
||||||
if test -d $$d/$$file; then \
|
|
||||||
dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
|
|
||||||
if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
|
|
||||||
cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
|
|
||||||
fi; \
|
|
||||||
cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
|
|
||||||
else \
|
|
||||||
test -f $(distdir)/$$file \
|
|
||||||
|| cp -p $$d/$$file $(distdir)/$$file \
|
|
||||||
|| exit 1; \
|
|
||||||
fi; \
|
|
||||||
done
|
|
||||||
check-am: all-am
|
|
||||||
check: check-am
|
|
||||||
all-am: Makefile $(PROGRAMS) $(HEADERS)
|
|
||||||
installdirs:
|
|
||||||
for dir in "$(DESTDIR)$(bindir)"; do \
|
|
||||||
test -z "$$dir" || $(MKDIR_P) "$$dir"; \
|
|
||||||
done
|
|
||||||
install: install-am
|
|
||||||
install-exec: install-exec-am
|
|
||||||
install-data: install-data-am
|
|
||||||
uninstall: uninstall-am
|
|
||||||
|
|
||||||
install-am: all-am
|
|
||||||
@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
|
|
||||||
|
|
||||||
installcheck: installcheck-am
|
|
||||||
install-strip:
|
|
||||||
$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
|
|
||||||
install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
|
|
||||||
`test -z '$(STRIP)' || \
|
|
||||||
echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
|
|
||||||
mostlyclean-generic:
|
|
||||||
|
|
||||||
clean-generic:
|
|
||||||
|
|
||||||
distclean-generic:
|
|
||||||
-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
|
|
||||||
|
|
||||||
maintainer-clean-generic:
|
|
||||||
@echo "This command is intended for maintainers to use"
|
|
||||||
@echo "it deletes files that may require special tools to rebuild."
|
|
||||||
clean: clean-am
|
|
||||||
|
|
||||||
clean-am: clean-binPROGRAMS clean-generic clean-libtool mostlyclean-am
|
|
||||||
|
|
||||||
distclean: distclean-am
|
|
||||||
-rm -rf ./$(DEPDIR)
|
|
||||||
-rm -f Makefile
|
|
||||||
distclean-am: clean-am distclean-compile distclean-generic \
|
|
||||||
distclean-tags
|
|
||||||
|
|
||||||
dvi: dvi-am
|
|
||||||
|
|
||||||
dvi-am:
|
|
||||||
|
|
||||||
html: html-am
|
|
||||||
|
|
||||||
info: info-am
|
|
||||||
|
|
||||||
info-am:
|
|
||||||
|
|
||||||
install-data-am:
|
|
||||||
|
|
||||||
install-dvi: install-dvi-am
|
|
||||||
|
|
||||||
install-exec-am: install-binPROGRAMS
|
|
||||||
|
|
||||||
install-html: install-html-am
|
|
||||||
|
|
||||||
install-info: install-info-am
|
|
||||||
|
|
||||||
install-man:
|
|
||||||
|
|
||||||
install-pdf: install-pdf-am
|
|
||||||
|
|
||||||
install-ps: install-ps-am
|
|
||||||
|
|
||||||
installcheck-am:
|
|
||||||
|
|
||||||
maintainer-clean: maintainer-clean-am
|
|
||||||
-rm -rf ./$(DEPDIR)
|
|
||||||
-rm -f Makefile
|
|
||||||
maintainer-clean-am: distclean-am maintainer-clean-generic
|
|
||||||
|
|
||||||
mostlyclean: mostlyclean-am
|
|
||||||
|
|
||||||
mostlyclean-am: mostlyclean-compile mostlyclean-generic \
|
|
||||||
mostlyclean-libtool
|
|
||||||
|
|
||||||
pdf: pdf-am
|
|
||||||
|
|
||||||
pdf-am:
|
|
||||||
|
|
||||||
ps: ps-am
|
|
||||||
|
|
||||||
ps-am:
|
|
||||||
|
|
||||||
uninstall-am: uninstall-binPROGRAMS
|
|
||||||
|
|
||||||
.MAKE: install-am install-strip
|
|
||||||
|
|
||||||
.PHONY: CTAGS GTAGS all all-am check check-am clean clean-binPROGRAMS \
|
|
||||||
clean-generic clean-libtool ctags distclean distclean-compile \
|
|
||||||
distclean-generic distclean-libtool distclean-tags distdir dvi \
|
|
||||||
dvi-am html html-am info info-am install install-am \
|
|
||||||
install-binPROGRAMS install-data install-data-am install-dvi \
|
|
||||||
install-dvi-am install-exec install-exec-am install-html \
|
|
||||||
install-html-am install-info install-info-am install-man \
|
|
||||||
install-pdf install-pdf-am install-ps install-ps-am \
|
|
||||||
install-strip installcheck installcheck-am installdirs \
|
|
||||||
maintainer-clean maintainer-clean-generic mostlyclean \
|
|
||||||
mostlyclean-compile mostlyclean-generic mostlyclean-libtool \
|
|
||||||
pdf pdf-am ps ps-am tags uninstall uninstall-am \
|
|
||||||
uninstall-binPROGRAMS
|
|
||||||
|
|
||||||
# Tell versions [3.59,3.63) of GNU make to not export all variables.
|
|
||||||
# Otherwise a system limit (for SysV at least) may be exceeded.
|
|
||||||
.NOEXPORT:
|
|
||||||
Loading…
Add table
Add a link
Reference in a new issue