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canape 2007-11-08 12:51:46 +00:00
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105
trunk/paradiseo-peo/tutorial/Lesson3/CMakeLists.txt
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######################################################################################
### 0) Set the compiler and define targets to easily run the lessons
######################################################################################
SET (CMAKE_CXX_COMPILER mpicxx)
ADD_CUSTOM_TARGET(install DEPENDS ${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson3/lesson.param ${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson3/schema.xml)
ADD_CUSTOM_COMMAND(
TARGET install
POST_BUILD
COMMAND ${CMAKE_COMMAND}
ARGS -E copy_if_different
${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson3/lesson.param
${ParadisEO-PEO_BINARY_DIR}/tutorial/Lesson3)
ADD_CUSTOM_COMMAND(
TARGET install
POST_BUILD
COMMAND ${CMAKE_COMMAND}
ARGS -E copy_if_different
${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson3/schema.xml
${ParadisEO-PEO_BINARY_DIR}/tutorial/Lesson3)
ADD_CUSTOM_COMMAND(
TARGET install
POST_BUILD
COMMAND ${CMAKE_COMMAND}
ARGS -E copy_if_different
${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson3/ParadisEO-PEO_Lesson3.pdf
${ParadisEO-PEO_BINARY_DIR}/tutorial/Lesson3)
######################################################################################
######################################################################################
### 1) Include the sources
######################################################################################
INCLUDE_DIRECTORIES(${EO_SRC_DIR}/src ${MO_SRC_DIR}/src ${ParadisEO-PEO_SOURCE_DIR}/src ${TSP_SRC_DIR})
######################################################################################
######################################################################################
### 2) Specify where CMake can find the libraries
######################################################################################
IF(NOT WIN32 OR CYGWIN)
LINK_DIRECTORIES(${EO_BIN_DIR}/lib ${ParadisEO-PEO_BINARY_DIR}/lib ${TSP_BINARY_DIR}/lib)
ENDIF(NOT WIN32 OR CYGWIN)
# especially for Visual Studio
IF(WIN32 AND NOT CYGWIN)
LINK_DIRECTORIES(${EO_BIN_DIR}\\lib\\${CMAKE_BUILD_TYPE} ${ParadisEO-PEO_BINARY_DIR}\\lib\\${CMAKE_BUILD_TYPE} ${TSP_BINARY_DIR}\\lib\\${CMAKE_BUILD_TYPE})
ENDIF(WIN32 AND NOT CYGWIN)
######################################################################################
######################################################################################
### 3) Define your target(s): just an executable here
######################################################################################
ADD_EXECUTABLE(tspExample main.cpp)
ADD_DEPENDENCIES(tspExample tsp peo rmc_mpi)
######################################################################################
######################################################################################
### 4) Optionnal: define properties
######################################################################################
SET(LESSON3_VERSION ${GLOBAL_VERSION})
SET_TARGET_PROPERTIES(tspExample PROPERTIES VERSION "${LESSON3_VERSION}")
######################################################################################
######################################################################################
### 5) Link the librairies
######################################################################################
TARGET_LINK_LIBRARIES(tspExample ${XML2_LIBS} tsp peo rmc_mpi eo eoutils)
######################################################################################
######################################################################################
### 6) Windows advanced config - especially for Microsoft Visual Studio 8
######################################################################################
IF(CMAKE_CXX_COMPILER MATCHES cl)
IF(NOT WITH_SHARED_LIBS)
IF(CMAKE_GENERATOR STREQUAL "Visual Studio 8 2005")
SET(CMAKE_CXX_FLAGS "/nologo /W3 /Gy")
SET(CMAKE_CXX_FLAGS_DEBUG "/MTd /Z7 /Od")
SET(CMAKE_CXX_FLAGS_RELEASE "/MT /O2")
SET(CMAKE_CXX_FLAGS_MINSIZEREL "/MT /O2")
SET(CMAKE_CXX_FLAGS_RELWITHDEBINFO "/MTd /Z7 /Od")
SET(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} /SUBSYSTEM:CONSOLE")
ENDIF(CMAKE_GENERATOR STREQUAL "Visual Studio 8 2005")
ENDIF(NOT WITH_SHARED_LIBS)
ENDIF(CMAKE_CXX_COMPILER MATCHES cl)
######################################################################################

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trunk/paradiseo-peo/tutorial/Lesson3/ParadisEO-PEO_Lesson3.pdf
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trunk/paradiseo-peo/tutorial/Lesson3/main.cpp
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/*
* <main.cpp>
* Copyright (C) DOLPHIN Project-Team, INRIA Futurs, 2006-2007
* (C) OPAC Team, LIFL, 2002-2007
*
* Sebastien Cahon, Alexandru-Adrian Tantar
*
* This software is governed by the CeCILL license under French law and
* abiding by the rules of distribution of free software. You can use,
* modify and/ or redistribute the software under the terms of the CeCILL
* license as circulated by CEA, CNRS and INRIA at the following URL
* "http://www.cecill.info".
*
* As a counterpart to the access to the source code and rights to copy,
* modify and redistribute granted by the license, users are provided only
* with a limited warranty and the software's author, the holder of the
* economic rights, and the successive licensors have only limited liability.
*
* In this respect, the user's attention is drawn to the risks associated
* with loading, using, modifying and/or developing or reproducing the
* software by the user in light of its specific status of free software,
* that may mean that it is complicated to manipulate, and that also
* therefore means that it is reserved for developers and experienced
* professionals having in-depth computer knowledge. Users are therefore
* encouraged to load and test the software's suitability as regards their
* requirements in conditions enabling the security of their systems and/or
* data to be ensured and, more generally, to use and operate it in the
* same conditions as regards security.
* The fact that you are presently reading this means that you have had
* knowledge of the CeCILL license and that you accept its terms.
*
* ParadisEO WebSite : http://paradiseo.gforge.inria.fr
* Contact: paradiseo-help@lists.gforge.inria.fr
*
*/
#include "route.h"
#include "route_init.h"
#include "route_eval.h"
#include "order_xover.h"
#include "city_swap.h"
#include "param.h"
#include <peo>
#define POP_SIZE 10
#define NUM_GEN 100
#define CROSS_RATE 1.0
#define MUT_RATE 0.01
#define MIG_FREQ 10
#define MIG_SIZE 5
int main( int __argc, char** __argv ) {
// initializing the ParadisEO-PEO environment
peo :: init( __argc, __argv );
// processing the command line specified parameters
loadParameters( __argc, __argv );
// init, eval operators, EA operators -------------------------------------------------------------------------------------------------------------
RouteInit route_init; // random init object - creates random Route objects
RouteEval full_eval; // evaluator object - offers a fitness value for a specified Route object
OrderXover crossover; // crossover operator - creates two offsprings out of two specified parents
CitySwap mutation; // mutation operator - randomly mutates one gene for a specified individual
// ------------------------------------------------------------------------------------------------------------------------------------------------
// evolutionary algorithm components --------------------------------------------------------------------------------------------------------------
eoPop< Route > population( POP_SIZE, route_init ); // initial population for the algorithm having POP_SIZE individuals
peoParaPopEval< Route > eaPopEval( full_eval ); // evaluator object - to be applied at each iteration on the entire population
eoGenContinue< Route > eaCont( NUM_GEN ); // continuation criterion - the algorithm will iterate for NUM_GEN generations
eoCheckPoint< Route > eaCheckpointContinue( eaCont ); // checkpoint object - verify at each iteration if the continuation criterion is met
eoRankingSelect< Route > selectionStrategy; // selection strategy - applied at each iteration for selecting parent individuals
eoSelectNumber< Route > eaSelect( selectionStrategy, POP_SIZE ); // selection object - POP_SIZE individuals are selected at each iteration
// transform operator - includes the crossover and the mutation operators with a specified associated rate
eoSGATransform< Route > transform( crossover, CROSS_RATE, mutation, MUT_RATE );
peoSeqTransform< Route > eaTransform( transform ); // ParadisEO transform operator (please remark the peo prefix) - wraps an e EO transform object
eoPlusReplacement< Route > eaReplace; // replacement strategy - for replacing the initial population with offspring individuals
// ------------------------------------------------------------------------------------------------------------------------------------------------
RingTopology topology;
// migration policy and components ----------------------------------------------------------------------------------------------------------------
eoPeriodicContinue< Route > mig_cont( MIG_FREQ ); // migration occurs periodically
eoRandomSelect< Route > mig_select_one; // emigrants are randomly selected
eoSelectNumber< Route > mig_select( mig_select_one, MIG_SIZE );
eoPlusReplacement< Route > mig_replace; // immigrants replace the worse individuals
peoSyncIslandMig< Route > mig( MIG_FREQ, mig_select, mig_replace, topology, population, population );
//peoAsyncIslandMig< Route > mig( mig_cont, mig_select, mig_replace, topology, population, population );
eaCheckpointContinue.add( mig );
// ------------------------------------------------------------------------------------------------------------------------------------------------
// ParadisEO-PEO evolutionary algorithm -----------------------------------------------------------------------------------------------------------
peoEA< Route > eaAlg( eaCheckpointContinue, eaPopEval, eaSelect, eaTransform, eaReplace );
mig.setOwner( eaAlg );
eaAlg( population ); // specifying the initial population for the algorithm, to be iteratively evolved
// ------------------------------------------------------------------------------------------------------------------------------------------------
// evolutionary algorithm components --------------------------------------------------------------------------------------------------------------
eoPop< Route > population2( POP_SIZE, route_init ); // initial population for the algorithm having POP_SIZE individuals
peoParaPopEval< Route > eaPopEval2( full_eval ); // evaluator object - to be applied at each iteration on the entire population
eoGenContinue< Route > eaCont2( NUM_GEN ); // continuation criterion - the algorithm will iterate for NUM_GEN generations
eoCheckPoint< Route > eaCheckpointContinue2( eaCont2 ); // checkpoint object - verify at each iteration if the continuation criterion is met
eoRankingSelect< Route > selectionStrategy2; // selection strategy - applied at each iteration for selecting parent individuals
eoSelectNumber< Route > eaSelect2( selectionStrategy2, POP_SIZE ); // selection object - POP_SIZE individuals are selected at each iteration
// transform operator - includes the crossover and the mutation operators with a specified associated rate
eoSGATransform< Route > transform2( crossover, CROSS_RATE, mutation, MUT_RATE );
peoSeqTransform< Route > eaTransform2( transform2 ); // ParadisEO transform operator (please remark the peo prefix) - wraps an e EO transform object
eoPlusReplacement< Route > eaReplace2; // replacement strategy - for replacing the initial population with offspring individuals
// ------------------------------------------------------------------------------------------------------------------------------------------------
// migration policy and components ----------------------------------------------------------------------------------------------------------------
eoPeriodicContinue< Route > mig_cont2( MIG_FREQ ); // migration occurs periodically
eoRandomSelect< Route > mig_select_one2; // emigrants are randomly selected
eoSelectNumber< Route > mig_select2( mig_select_one2, MIG_SIZE );
eoPlusReplacement< Route > mig_replace2; // immigrants replace the worse individuals
peoSyncIslandMig< Route > mig2( MIG_FREQ, mig_select2, mig_replace2, topology, population2, population2 );
//peoAsyncIslandMig< Route > mig2( mig_cont2, mig_select2, mig_replace2, topology, population2, population2 );
eaCheckpointContinue2.add( mig2 );
// ------------------------------------------------------------------------------------------------------------------------------------------------
// ParadisEO-PEO evolutionary algorithm -----------------------------------------------------------------------------------------------------------
peoEA< Route > eaAlg2( eaCheckpointContinue2, eaPopEval2, eaSelect2, eaTransform2, eaReplace2 );
mig2.setOwner( eaAlg2 );
eaAlg2( population2 ); // specifying the initial population for the algorithm, to be iteratively evolved
// ------------------------------------------------------------------------------------------------------------------------------------------------
peo :: run( );
peo :: finalize( );
if(getNodeRank()==1)
{
std::cout << "Population 1 :\n" << population << std::endl;
std::cout << "Population 2 :\n" << population2 << std::endl;
}
// shutting down the ParadisEO-PEO environment
return 0;
}

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trunk/paradiseo-peo/tutorial/Lesson3/mainEA.cpp Normal file
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/*
* <main.cpp>
* Copyright (C) DOLPHIN Project-Team, INRIA Futurs, 2006-2007
* (C) OPAC Team, INRIA, 2007
*
* Clive Canape
*
* This software is governed by the CeCILL license under French law and
* abiding by the rules of distribution of free software. You can use,
* modify and/ or redistribute the software under the terms of the CeCILL
* license as circulated by CEA, CNRS and INRIA at the following URL
* "http://www.cecill.info".
*
* As a counterpart to the access to the source code and rights to copy,
* modify and redistribute granted by the license, users are provided only
* with a limited warranty and the software's author, the holder of the
* economic rights, and the successive licensors have only limited liability.
*
* In this respect, the user's attention is drawn to the risks associated
* with loading, using, modifying and/or developing or reproducing the
* software by the user in light of its specific status of free software,
* that may mean that it is complicated to manipulate, and that also
* therefore means that it is reserved for developers and experienced
* professionals having in-depth computer knowledge. Users are therefore
* encouraged to load and test the software's suitability as regards their
* requirements in conditions enabling the security of their systems and/or
* data to be ensured and, more generally, to use and operate it in the
* same conditions as regards security.
* The fact that you are presently reading this means that you have had
* knowledge of the CeCILL license and that you accept its terms.
*
* ParadisEO WebSite : http://paradiseo.gforge.inria.fr
* Contact: paradiseo-help@lists.gforge.inria.fr
*
*/
#include <peo>
#include <es.h>
typedef eoReal<double> Indi;
double f (const Indi & _indi)
{
double sum;
sum=_indi[1]-pow(_indi[0],2);
sum=100*pow(sum,2);
sum+=pow((1-_indi[0]),2);
return (-sum);
}
int main (int __argc, char *__argv[])
{
peo :: init( __argc, __argv );
const unsigned int VEC_SIZE = 2;
const unsigned int POP_SIZE = 20;
const unsigned int MAX_GEN = 300;
const double INIT_POSITION_MIN = -2.0;
const double INIT_POSITION_MAX = 2.0;
const float CROSS_RATE = 0.8;
const double EPSILON = 0.01;
const float MUT_RATE = 0.3;
// MIG_FREQ define the frequence of the migration.
const unsigned int MIG_FREQ = 10;
// MIG_SIZE define the size of each migration.
const unsigned int MIG_SIZE = 5;
rng.reseed (time(0));
// Define the topology of your island model
RingTopology topology;
// First algorithm
/*****************************************************************************************/
eoGenContinue < Indi > genContPara (MAX_GEN);
eoCombinedContinue <Indi> continuatorPara (genContPara);
eoCheckPoint<Indi> checkpoint(continuatorPara);
peoEvalFunc<Indi> plainEval(f);
peoSeqPopEval< Indi > eval(plainEval); // Here, the evaluation is sequential
eoUniformGenerator < double >uGen (INIT_POSITION_MIN, INIT_POSITION_MAX);
eoInitFixedLength < Indi > random (VEC_SIZE, uGen);
eoRankingSelect<Indi> selectionStrategy;
eoSelectNumber<Indi> select(selectionStrategy,POP_SIZE);
eoSegmentCrossover<Indi> crossover;
eoUniformMutation<Indi> mutation(EPSILON);
eoSGATransform<Indi> transform(crossover,CROSS_RATE,mutation,MUT_RATE);
peoSeqTransform<Indi> eaTransform(transform); // Here, the transformation is sequential
eoPlusReplacement<Indi> replace;
eoPop < Indi > pop;
pop.append (POP_SIZE, random);
eoPeriodicContinue <Indi> mig_cont( MIG_FREQ ); // Migration occurs periodically
eoRandomSelect<Indi> mig_select_one; // Emigrants are randomly selected
eoSelectNumber<Indi> mig_select (mig_select_one,MIG_SIZE);
eoPlusReplacement<Indi> mig_replace; // Immigrants replace the worse individuals
/*****************************************************************************************/
// Second algorithm (on the same model but with others names)
/*****************************************************************************************/
eoGenContinue < Indi > genContPara2 (MAX_GEN);
eoCombinedContinue <Indi> continuatorPara2 (genContPara2);
eoCheckPoint<Indi> checkpoint2(continuatorPara2);
peoEvalFunc<Indi> plainEval2(f);
peoSeqPopEval< Indi > eval2(plainEval2);
eoUniformGenerator < double >uGen2 (INIT_POSITION_MIN, INIT_POSITION_MAX);
eoInitFixedLength < Indi > random2 (VEC_SIZE, uGen2);
eoRankingSelect<Indi> selectionStrategy2;
eoSelectNumber<Indi> select2(selectionStrategy2,POP_SIZE);
eoSegmentCrossover<Indi> crossover2;
eoUniformMutation<Indi> mutation2(EPSILON);
eoSGATransform<Indi> transform2(crossover2,CROSS_RATE,mutation2,MUT_RATE);
peoSeqTransform<Indi> eaTransform2(transform2);
eoPlusReplacement<Indi> replace2;
eoPop < Indi > pop2;
pop2.append (POP_SIZE, random2);
eoPeriodicContinue <Indi> mig_cont2( MIG_FREQ );
eoRandomSelect<Indi> mig_select_one2;
eoSelectNumber<Indi> mig_select2 (mig_select_one2,MIG_SIZE);
eoPlusReplacement<Indi> mig_replace2;
/*****************************************************************************************/
// You can choose between :
//
// - Synchrone communication : peoSyncIslandMig<Indi> mig(MIG_FREQ,mig_select,mig_replace,topology,pop,pop);
// - Asynchrone communication : peoAsyncIslandMig<Indi> mig(mig_cont,mig_select,mig_replace,topology,pop,pop);
// With a grid, you should use an asynchrone communication
peoAsyncIslandMig<Indi> mig(mig_cont,mig_select,mig_replace,topology,pop,pop2);
checkpoint.add(mig);
peoAsyncIslandMig<Indi> mig2(mig_cont2,mig_select2,mig_replace2,topology,pop2,pop);
checkpoint2.add(mig2);
// Initialization of the algorithms
peoEA<Indi> Algo(checkpoint,eval,select,eaTransform,replace);
mig.setOwner(Algo);
Algo(pop);
peoEA<Indi> Algo2(checkpoint2,eval2,select2,eaTransform2,replace2);
mig2.setOwner(Algo2);
Algo2(pop2);
peo :: run();
peo :: finalize();
if(getNodeRank()==1)
{
std::cout << "Final population 1 :\n" << pop << std::endl;
std::cout << "Final population 2 :\n" << pop2 << std::endl;
}
}

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trunk/paradiseo-peo/tutorial/Lesson3/mainPSO.cpp Normal file
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/*
* <main.cpp>
* Copyright (C) DOLPHIN Project-Team, INRIA Futurs, 2006-2007
* (C) OPAC Team, INRIA, 2007
*
* Clive Canape
*
* This software is governed by the CeCILL license under French law and
* abiding by the rules of distribution of free software. You can use,
* modify and/ or redistribute the software under the terms of the CeCILL
* license as circulated by CEA, CNRS and INRIA at the following URL
* "http://www.cecill.info".
*
* As a counterpart to the access to the source code and rights to copy,
* modify and redistribute granted by the license, users are provided only
* with a limited warranty and the software's author, the holder of the
* economic rights, and the successive licensors have only limited liability.
*
* In this respect, the user's attention is drawn to the risks associated
* with loading, using, modifying and/or developing or reproducing the
* software by the user in light of its specific status of free software,
* that may mean that it is complicated to manipulate, and that also
* therefore means that it is reserved for developers and experienced
* professionals having in-depth computer knowledge. Users are therefore
* encouraged to load and test the software's suitability as regards their
* requirements in conditions enabling the security of their systems and/or
* data to be ensured and, more generally, to use and operate it in the
* same conditions as regards security.
* The fact that you are presently reading this means that you have had
* knowledge of the CeCILL license and that you accept its terms.
*
* ParadisEO WebSite : http://paradiseo.gforge.inria.fr
* Contact: paradiseo-help@lists.gforge.inria.fr
*
*/
#include <peo>
typedef eoRealParticle < double >Indi;
double f (const Indi & _indi)
{
double sum;
sum=_indi[1]-pow(_indi[0],2);
sum=100*pow(sum,2);
sum+=pow((1-_indi[0]),2);
return (-sum);
}
int main (int __argc, char *__argv[])
{
// In this lesson, we define two algorithms of the PSO witch represente two islands.
// Obviously, you can define more algorithms.
// The parameters are commun between the two algorithms.
/*****************************************************************************************/
peo :: init( __argc, __argv );
const unsigned int VEC_SIZE = 2;
const unsigned int POP_SIZE = 20;
const unsigned int NEIGHBORHOOD_SIZE= 6;
const unsigned int MAX_GEN = 150;
const double INIT_POSITION_MIN = -2.0;
const double INIT_POSITION_MAX = 2.0;
const double INIT_VELOCITY_MIN = -1.;
const double INIT_VELOCITY_MAX = 1.;
const double C1 = 0.5;
const double C2 = 2.;
// C3 is used for the calculation of one of the strategies of the island model.
const double C3 = 2.;
// MIG_FREQ define the frequence of the migration.
const unsigned int MIG_FREQ = 10; // The optimal value is 1 or 2 for the component peoPSOVelocity.
rng.reseed (time(0));
/*****************************************************************************************/
// Define the topology of your island model
RingTopology topologyMig;
// First algorithm
/*****************************************************************************************/
peoEvalFuncPSO<Indi, double, const Indi& > plainEval(f);
peoSeqPopEval< Indi > eval(plainEval); // Here, the evaluation is sequential !
eoUniformGenerator < double >uGen (INIT_POSITION_MIN, INIT_POSITION_MAX);
eoInitFixedLength < Indi > random (VEC_SIZE, uGen);
eoUniformGenerator < double >sGen (INIT_VELOCITY_MIN, INIT_VELOCITY_MAX);
eoVelocityInitFixedLength < Indi > veloRandom (VEC_SIZE, sGen);
eoFirstIsBestInit < Indi > localInit;
eoRealVectorBounds bndsFlight(VEC_SIZE,INIT_POSITION_MIN,INIT_POSITION_MAX);
eoStandardFlight < Indi > flight(bndsFlight);
eoPop < Indi > pop;
pop.append (POP_SIZE, random);
peoInitializer <Indi> init(eval,veloRandom,localInit,pop);
eoLinearTopology<Indi> topology(NEIGHBORHOOD_SIZE);
eoRealVectorBounds bnds(VEC_SIZE,INIT_VELOCITY_MIN,INIT_VELOCITY_MAX);
eoStandardVelocity < Indi > velocity (topology,C1,C2,bnds);
eoGenContinue < Indi > genContPara (MAX_GEN);
eoCheckPoint<Indi> checkpoint(genContPara);
// Specific implementation for the island model
eoPeriodicContinue< Indi > mig_cont( MIG_FREQ );
peoPSOSelect<Indi> mig_selec(topology);
eoSelectNumber< Indi > mig_select(mig_selec);
// If you want to use a replacement stategy : peoPSOReplacement<Indi> mig_replace;
// If you want to use a consideration of the migration in the calculation of the velocity : peoPSOVelocity<Indi> mig_replace(C3,velocity);
peoPSOReplacement<Indi> mig_replace;
/*****************************************************************************************/
// Second algorithm (on the same model but with others names)
/*****************************************************************************************/
peoEvalFuncPSO<Indi, double, const Indi& > plainEval2(f);
peoSeqPopEval< Indi > eval2(plainEval2);
eoUniformGenerator < double >uGen2 (INIT_POSITION_MIN, INIT_POSITION_MAX);
eoInitFixedLength < Indi > random2 (VEC_SIZE, uGen2);
eoUniformGenerator < double >sGen2 (INIT_VELOCITY_MIN, INIT_VELOCITY_MAX);
eoVelocityInitFixedLength < Indi > veloRandom2 (VEC_SIZE, sGen2);
eoFirstIsBestInit < Indi > localInit2;
eoRealVectorBounds bndsFlight2(VEC_SIZE,INIT_POSITION_MIN,INIT_POSITION_MAX);
eoStandardFlight < Indi > flight2(bndsFlight2);
eoPop < Indi > pop2;
pop2.append (POP_SIZE, random2);
peoInitializer <Indi> init2(eval2,veloRandom2,localInit2,pop2);
eoLinearTopology<Indi> topology2(NEIGHBORHOOD_SIZE);
eoRealVectorBounds bnds2(VEC_SIZE,INIT_VELOCITY_MIN,INIT_VELOCITY_MAX);
eoStandardVelocity < Indi > velocity2 (topology2,C1,C2,bnds2);
eoGenContinue < Indi > genContPara2 (MAX_GEN);
eoCheckPoint<Indi> checkpoint2(genContPara2);
eoPeriodicContinue< Indi > mig_cont2( MIG_FREQ );
peoPSOSelect<Indi> mig_selec2(topology2);
eoSelectNumber< Indi > mig_select2(mig_selec2);
peoPSOReplacement<Indi> mig_replace2;
/*****************************************************************************************/
// Define the communication between the islands
peoAsyncIslandMig< Indi > mig( mig_cont, mig_select, mig_replace, topologyMig, pop, pop);
checkpoint.add( mig );
peoAsyncIslandMig< Indi > mig2( mig_cont2, mig_select2, mig_replace2, topologyMig, pop2, pop2);
checkpoint2.add( mig2 );
// Initialization of the algorithms
peoPSO < Indi > psa(init,checkpoint, eval, velocity, flight);
mig.setOwner( psa );
psa(pop);
peoPSO < Indi > psa2(init2,checkpoint2, eval2, velocity2, flight2);
mig2.setOwner( psa2 );
psa2(pop2);
peo :: run();
peo :: finalize();
if(getNodeRank()==1)
{
std::cout << "Population 1 :\n" << pop << std::endl;
std::cout << "Population 2 :\n" << pop2 << std::endl;
}
}

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trunk/paradiseo-peo/tutorial/Lesson3/paradiseo-peo-lsn.doxyfile
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# Doxyfile 1.4.7
#---------------------------------------------------------------------------
# Project related configuration options
#---------------------------------------------------------------------------
PROJECT_NAME = "ParadisEO-PEO Lesson3"
PROJECT_NUMBER = 0.1
OUTPUT_DIRECTORY = ../../../doc/html/lesson3
CREATE_SUBDIRS = NO
OUTPUT_LANGUAGE = English
USE_WINDOWS_ENCODING = NO
BRIEF_MEMBER_DESC = YES
REPEAT_BRIEF = YES
ABBREVIATE_BRIEF = "The $name class" \
"The $name widget" \
"The $name file" \
is \
provides \
specifies \
contains \
represents \
a \
an \
the
ALWAYS_DETAILED_SEC = NO
INLINE_INHERITED_MEMB = NO
FULL_PATH_NAMES = NO
STRIP_FROM_PATH =
STRIP_FROM_INC_PATH =
SHORT_NAMES = NO
JAVADOC_AUTOBRIEF = YES
MULTILINE_CPP_IS_BRIEF = NO
DETAILS_AT_TOP = NO
INHERIT_DOCS = YES
SEPARATE_MEMBER_PAGES = NO
TAB_SIZE = 8
ALIASES =
OPTIMIZE_OUTPUT_FOR_C = NO
OPTIMIZE_OUTPUT_JAVA = NO
BUILTIN_STL_SUPPORT = NO
DISTRIBUTE_GROUP_DOC = NO
SUBGROUPING = YES
#---------------------------------------------------------------------------
# Build related configuration options
#---------------------------------------------------------------------------
EXTRACT_ALL = NO
EXTRACT_PRIVATE = YES
EXTRACT_STATIC = YES
EXTRACT_LOCAL_CLASSES = YES
EXTRACT_LOCAL_METHODS = NO
HIDE_UNDOC_MEMBERS = YES
HIDE_UNDOC_CLASSES = YES
HIDE_FRIEND_COMPOUNDS = NO
HIDE_IN_BODY_DOCS = NO
INTERNAL_DOCS = NO
CASE_SENSE_NAMES = YES
HIDE_SCOPE_NAMES = NO
SHOW_INCLUDE_FILES = YES
INLINE_INFO = YES
SORT_MEMBER_DOCS = NO
SORT_BRIEF_DOCS = NO
SORT_BY_SCOPE_NAME = NO
GENERATE_TODOLIST = YES
GENERATE_TESTLIST = YES
GENERATE_BUGLIST = YES
GENERATE_DEPRECATEDLIST= YES
ENABLED_SECTIONS =
MAX_INITIALIZER_LINES = 30
SHOW_USED_FILES = YES
SHOW_DIRECTORIES = NO
FILE_VERSION_FILTER =
#---------------------------------------------------------------------------
# configuration options related to warning and progress messages
#---------------------------------------------------------------------------
QUIET = YES
WARNINGS = YES
WARN_IF_UNDOCUMENTED = YES
WARN_IF_DOC_ERROR = YES
WARN_NO_PARAMDOC = NO
WARN_FORMAT = "$file:$line: $text"
WARN_LOGFILE =
#---------------------------------------------------------------------------
# configuration options related to the input files
#---------------------------------------------------------------------------
INPUT = .
FILE_PATTERNS = *.cpp \
*.h \
NEWS \
README
RECURSIVE = YES
EXCLUDE =
EXCLUDE_SYMLINKS = NO
EXCLUDE_PATTERNS =
EXAMPLE_PATH =
EXAMPLE_PATTERNS = *
EXAMPLE_RECURSIVE = NO
IMAGE_PATH = ../../docs/images
INPUT_FILTER =
FILTER_PATTERNS =
FILTER_SOURCE_FILES = NO
#---------------------------------------------------------------------------
# configuration options related to source browsing
#---------------------------------------------------------------------------
SOURCE_BROWSER = YES
INLINE_SOURCES = NO
STRIP_CODE_COMMENTS = YES
REFERENCED_BY_RELATION = YES
REFERENCES_RELATION = YES
REFERENCES_LINK_SOURCE = YES
USE_HTAGS = NO
VERBATIM_HEADERS = YES
#---------------------------------------------------------------------------
# configuration options related to the alphabetical class index
#---------------------------------------------------------------------------
ALPHABETICAL_INDEX = YES
COLS_IN_ALPHA_INDEX = 3
IGNORE_PREFIX = peo
#---------------------------------------------------------------------------
# configuration options related to the HTML output
#---------------------------------------------------------------------------
GENERATE_HTML = YES
HTML_OUTPUT = html
HTML_FILE_EXTENSION = .html
HTML_HEADER =
HTML_FOOTER =
HTML_STYLESHEET =
HTML_ALIGN_MEMBERS = YES
GENERATE_HTMLHELP = NO
CHM_FILE =
HHC_LOCATION =
GENERATE_CHI = NO
BINARY_TOC = NO
TOC_EXPAND = NO
DISABLE_INDEX = NO
ENUM_VALUES_PER_LINE = 4
GENERATE_TREEVIEW = YES
TREEVIEW_WIDTH = 250
#---------------------------------------------------------------------------
# configuration options related to the LaTeX output
#---------------------------------------------------------------------------
GENERATE_LATEX = YES
LATEX_OUTPUT = latex
LATEX_CMD_NAME = latex
MAKEINDEX_CMD_NAME = makeindex
COMPACT_LATEX = NO
PAPER_TYPE = a4wide
EXTRA_PACKAGES =
LATEX_HEADER =
PDF_HYPERLINKS = YES
USE_PDFLATEX = YES
LATEX_BATCHMODE = NO
LATEX_HIDE_INDICES = NO
#---------------------------------------------------------------------------
# configuration options related to the RTF output
#---------------------------------------------------------------------------
GENERATE_RTF = NO
RTF_OUTPUT = rtf
COMPACT_RTF = NO
RTF_HYPERLINKS = NO
RTF_STYLESHEET_FILE =
RTF_EXTENSIONS_FILE =
#---------------------------------------------------------------------------
# configuration options related to the man page output
#---------------------------------------------------------------------------
GENERATE_MAN = YES
MAN_OUTPUT = man
MAN_EXTENSION = .3
MAN_LINKS = NO
#---------------------------------------------------------------------------
# configuration options related to the XML output
#---------------------------------------------------------------------------
GENERATE_XML = NO
XML_OUTPUT = xml
XML_SCHEMA =
XML_DTD =
XML_PROGRAMLISTING = YES
#---------------------------------------------------------------------------
# configuration options for the AutoGen Definitions output
#---------------------------------------------------------------------------
GENERATE_AUTOGEN_DEF = NO
#---------------------------------------------------------------------------
# configuration options related to the Perl module output
#---------------------------------------------------------------------------
GENERATE_PERLMOD = NO
PERLMOD_LATEX = NO
PERLMOD_PRETTY = YES
PERLMOD_MAKEVAR_PREFIX =
#---------------------------------------------------------------------------
# Configuration options related to the preprocessor
#---------------------------------------------------------------------------
ENABLE_PREPROCESSING = YES
MACRO_EXPANSION = NO
EXPAND_ONLY_PREDEF = NO
SEARCH_INCLUDES = YES
INCLUDE_PATH =
INCLUDE_FILE_PATTERNS =
PREDEFINED =
EXPAND_AS_DEFINED =
SKIP_FUNCTION_MACROS = YES
#---------------------------------------------------------------------------
# Configuration::additions related to external references
#---------------------------------------------------------------------------
TAGFILES = ../../../paradiseo-mo/docs/eo.doxytag=../../../../../paradiseo-mo/docs/html \
../../../paradiseo-mo/docs/mo.doxytag=../../../../../paradiseo-mo/docs/html \
../../docs/paradiseo-peo.doxytag=../../ \
../shared/paradiseo-peo-lsn-shared.doxytag=../../lsnshared/html
GENERATE_TAGFILE = ../../docs/paradiseo-peo-lsn.doxytag
ALLEXTERNALS = NO
EXTERNAL_GROUPS = YES
PERL_PATH = /usr/bin/perl
#---------------------------------------------------------------------------
# Configuration options related to the dot tool
#---------------------------------------------------------------------------
CLASS_DIAGRAMS = YES
HIDE_UNDOC_RELATIONS = YES
HAVE_DOT = NO
CLASS_GRAPH = YES
COLLABORATION_GRAPH = YES
GROUP_GRAPHS = YES
UML_LOOK = NO
TEMPLATE_RELATIONS = NO
INCLUDE_GRAPH = YES
INCLUDED_BY_GRAPH = YES
CALL_GRAPH = NO
CALLER_GRAPH = NO
GRAPHICAL_HIERARCHY = YES
DIRECTORY_GRAPH = YES
DOT_IMAGE_FORMAT = png
DOT_PATH =
DOTFILE_DIRS =
MAX_DOT_GRAPH_WIDTH = 1024
MAX_DOT_GRAPH_HEIGHT = 1024
MAX_DOT_GRAPH_DEPTH = 0
DOT_TRANSPARENT = NO
DOT_MULTI_TARGETS = NO
GENERATE_LEGEND = YES
DOT_CLEANUP = YES
#---------------------------------------------------------------------------
# Configuration::additions related to the search engine
#---------------------------------------------------------------------------
SEARCHENGINE = YES

3
trunk/paradiseo-peo/tutorial/Lesson3/lesson.param → trunk/paradiseo-peo/tutorial/Lesson3/param
View file

@ -6,7 +6,4 @@
--schema=schema.xml
## parameters
--inst=../examples/tsp/benchs/eil101.tsp

19
trunk/paradiseo-peo/tutorial/Lesson3/schema.xml
View file

@ -1,19 +0,0 @@
<?xml version="1.0"?>
<schema>
<group scheduler="0">
<node name="0" num_workers="0">
</node>
<node name="1" num_workers="0">
<runner>1</runner>
<runner>2</runner>
</node>
<node name="2" num_workers="1">
</node>
<node name="3" num_workers="1">
</node>
</group>
</schema>