cleanup, prepare vecSigmaInit change
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kuepper
parent
e9324fdb07
commit
4510b6d712
4 changed files with 126 additions and 118 deletions
2
eo/NEWS
2
eo/NEWS
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@ -4,7 +4,7 @@
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clean up the code considerably. Assume availability of sstream and limits.
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* releases 0.9.3... (latest release is 0.9.3zz, 1. Oct. 2005)
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* release 0.9.3z.1 (1. Oct. 2005)
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- Support gcc-3.4 and gcc.4.x.
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- Provide full automake/autoconf/configure support.
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@ -1,33 +1,27 @@
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// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
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/* (c) Marc Schoenauer, Maarten Keijzer and GeNeura Team, 2000
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//-----------------------------------------------------------------------------
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// eoParser.h
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// (c) Marc Schoenauer, Maarten Keijzer and GeNeura Team, 2000
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/*
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This library is free software; you can redistribute it and/or
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modify it under the terms of the GNU Lesser General Public
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License as published by the Free Software Foundation; either
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version 2 of the License, or (at your option) any later version.
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This library is free software; you can redistribute it and/or modify it under
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the terms of the GNU Lesser General Public License as published by the Free
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Software Foundation; either version 2 of the License, or (at your option) any
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later version.
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This library is distributed in the hope that it will be useful,
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but WITHOUT ANY WARRANTY; without even the implied warranty of
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MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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Lesser General Public License for more details.
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This library is distributed in the hope that it will be useful, but WITHOUT ANY
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WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A
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PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details.
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You should have received a copy of the GNU Lesser General Public
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License along with this library; if not, write to the Free Software
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Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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You should have received a copy of the GNU Lesser General Public License along
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with this library; if not, write to the Free Software Foundation, Inc., 59
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Temple Place, Suite 330, Boston, MA 02111-1307 USA
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Contact: todos@geneura.ugr.es, http://geneura.ugr.es
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Marc.Schoenauer@polytechnique.fr
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mkeijzer@dhi.dk
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*/
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//-----------------------------------------------------------------------------
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/**
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CVS Info: $Date: 2005-09-28 21:49:26 $ $Version$ $Author: kuepper $
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Contact: http://eodev.sourceforge.net
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todos@geneura.ugr.es, http://geneura.ugr.es
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Marc.Schoenauer@polytechnique.fr
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mkeijzer@dhi.dk
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*/
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#ifndef eoParser_h
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#define eoParser_h
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#ifndef EO_PARSER_H
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#define EO_PARSER_H
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#include <map>
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#include <sstream>
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@ -37,10 +31,11 @@ CVS Info: $Date: 2005-09-28 21:49:26 $ $Version$ $Author: kuepper $
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#include "eoObject.h"
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#include "eoPersistent.h"
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/**
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eoParameterLoader is an abstract class that can be used as a base for your own
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parameter loading and saving. The command line parser eoParser is derived from
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this class.
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/** Parameter saving and loading
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eoParameterLoader is an abstract class that can be used as a base for your own
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parameter loading and saving. The command line parser eoParser is derived from
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this class.
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*/
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class eoParameterLoader
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{
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@ -49,11 +44,10 @@ public :
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/** Need a virtual destructor */
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virtual ~eoParameterLoader();
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/**
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* processParam is used to register a parameter and set its value if it is known
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*
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* @param param the parameter to process
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* @param section the section where this parameter belongs
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/** Register a parameter and set its value if it is known
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@param param the parameter to process
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@param section the section where this parameter belongs
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*/
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virtual void processParam(eoParam& param, std::string section = "") = 0;
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@ -147,11 +141,12 @@ public:
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std::string ProgramName() { return programName; }
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/**
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* checks if _param has been actually entered by the user
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*/
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virtual bool isItThere(eoParam& _param) const
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{ return getValue(_param).first; }
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/** Has param been entered by user?
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Checks if _param has been actually entered by the user
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*/
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virtual bool isItThere(eoParam& _param) const
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{ return getValue(_param).first; }
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/**
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* get a handle on a param from its longName
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@ -278,4 +273,15 @@ private:
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};
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#endif
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#endif // EO_PARSER_H
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// Local Variables:
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// coding: iso-8859-1
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// mode:C++
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// c-file-style: "Stroustrup"
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// comment-column: 35
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// fill-column: 80
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// End:
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@ -54,6 +54,9 @@ EXTRA_DIST = run_tests
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# extra flags for specific targets
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t_eoVirus_CXXFLAGS = $(AM_CXXFLAGS) -I$(top_srcdir)/contrib
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t_MGE_CXXFLAGS = -I$(top_srcdir)/contrib/MGE
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t_MGE1bit_CXXFLAGS = -I$(top_srcdir)/contrib/MGE
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t_MGE_control_CXXFLAGS = -I$(top_srcdir)/contrib/MGE
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# Specify source-files,
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# otherwise automake/make looks for C sources
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@ -63,11 +66,8 @@ t_eofitness_SOURCES = t-eofitness.cpp
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t_eoFitnessAssembledEA_SOURCES = t-eoFitnessAssembledEA.cpp
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t_eobin_SOURCES = t-eobin.cpp
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t_eoVirus_SOURCES = t-eoVirus.cpp
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t_MGE1bit_CXXFLAGS = -I$(top_srcdir)/contrib/MGE
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t_MGE1bit_SOURCES = t-MGE1bit.cpp
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t_MGE_CXXFLAGS = -I$(top_srcdir)/contrib/MGE
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t_MGE_SOURCES = t-MGE.cpp
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t_MGE_control_CXXFLAGS = -I$(top_srcdir)/contrib/MGE
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t_MGE_control_SOURCES = t-MGE-control.cpp
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t_eoStateAndParser_SOURCES = t-eoStateAndParser.cpp
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t_eoCheckpointing_SOURCES = t-eoCheckpointing.cpp
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@ -24,62 +24,63 @@ using namespace std;
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#include "real_value.h" // the sphere fitness
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// Now the main
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///////////////
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// Now the main
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///////////////
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typedef eoMinimizingFitness FitT;
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template <class EOT>
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void runAlgorithm(EOT, eoParser& _parser, eoState& _state);
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int main_function(int argc, char *argv[])
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int main_function(int argc, char *argv[])
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{
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// Create the command-line parser
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eoParser parser(argc, argv); // for user-parameter reading
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eoState state; // keeps all things allocated
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eoValueParam<bool>& simpleParam = parser.createParam(true, "Isotropic", "Isotropic self-adaptive mutation", 'i', "ES mutation");
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eoValueParam<bool>& stdevsParam = parser.createParam(false, "Stdev", "One self-adaptive stDev per variable", 's', "ES mutation");
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eoValueParam<bool>& corrParam = parser.createParam(false, "Correl", "Use correlated mutations", 'c', "ES mutation");
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// Create the command-line parser
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eoParser parser(argc, argv); // for user-parameter reading
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eoState state; // keeps all things allocated
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eoValueParam<bool>& simpleParam = parser.getORcreateParam(true, "Isotropic",
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"Isotropic self-adaptive mutation",
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'i', "ES mutation");
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eoValueParam<bool>& stdevsParam = parser.getORcreateParam(false, "Stdev",
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"One self-adaptive stDev per variable",
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's', "ES mutation");
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eoValueParam<bool>& corrParam = parser.getORcreateParam(false, "Correl",
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"Use correlated mutations",
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'c', "ES mutation");
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// Run the appropriate algorithm
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if (simpleParam.value() == false)
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{
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std::cout << "Using eoReal" << std::endl;
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runAlgorithm(eoReal<FitT>(), parser, state);
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std::cout << "Using eoReal" << std::endl;
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runAlgorithm(eoReal<FitT>(), parser, state);
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}
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else if (stdevsParam.value() == false)
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{
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std::cout << "Using eoEsSimple" << std::endl;
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runAlgorithm(eoEsSimple<FitT>(), parser, state);
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std::cout << "Using eoEsSimple" << std::endl;
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runAlgorithm(eoEsSimple<FitT>(), parser, state);
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}
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else if (corrParam.value() == false)
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{
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std::cout << "Using eoEsStdev" << std::endl;
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runAlgorithm(eoEsStdev<FitT>(), parser, state);
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std::cout << "Using eoEsStdev" << std::endl;
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runAlgorithm(eoEsStdev<FitT>(), parser, state);
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}
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else
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else
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{
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std::cout << "Using eoEsFull" << std::endl;
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runAlgorithm(eoEsFull<FitT>(), parser, state);
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std::cout << "Using eoEsFull" << std::endl;
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runAlgorithm(eoEsFull<FitT>(), parser, state);
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}
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return 0;
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return 0;
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}
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// A main that catches the exceptions
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int main(int argc, char **argv)
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{
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#ifdef _MSC_VER
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// rng.reseed(42);
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// rng.reseed(42);
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int flag = _CrtSetDbgFlag(_CRTDBG_LEAK_CHECK_DF);
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flag |= _CRTDBG_LEAK_CHECK_DF;
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flag |= _CRTDBG_LEAK_CHECK_DF;
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_CrtSetDbgFlag(flag);
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// _CrtSetBreakAlloc(100);
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// _CrtSetBreakAlloc(100);
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#endif
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try
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{
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main_function(argc, argv);
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@ -88,61 +89,62 @@ int main(int argc, char **argv)
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{
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std::cout << "Exception: " << e.what() << '\n';
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}
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}
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/** The templatized main (sort of)
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* quite similar to the main of other genotypes
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* (e.g. t-eoReal and t-eoGA in test dir)
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*/
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quite similar to the main of other genotypes (e.g. t-eoReal and t-eoGA
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in test dir)
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*/
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template <class EOT>
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void runAlgorithm(EOT, eoParser& _parser, eoState& _state)
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{
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typedef typename EOT::Fitness FitT;
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typedef typename EOT::Fitness FitT;
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///// FIRST, problem or representation dependent stuff
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//////////////////////////////////////////////////////
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///// FIRST, problem or representation dependent stuff
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//////////////////////////////////////////////////////
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// The evaluation fn - encapsulated into an eval counter for output
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eoEvalFuncPtr<EOT, double, const std::vector<double>&>
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mainEval( real_value );
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eoEvalFuncCounter<EOT> eval(mainEval);
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// The evaluation fn - encapsulated into an eval counter for output
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eoEvalFuncPtr<EOT, double, const std::vector<double>&> mainEval( real_value );
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eoEvalFuncCounter<EOT> eval(mainEval);
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// the genotype - through a genotype initializer
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eoRealInitBounded<EOT>& init = make_genotype(_parser, _state, EOT());
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// the genotype - through a genotype initializer
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eoRealInitBounded<EOT>& init = make_genotype(_parser, _state, EOT());
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// Build the variation operator (any seq/prop construct)
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eoGenOp<EOT>& op = make_op(_parser, _state, init);
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// Build the variation operator (any seq/prop construct)
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eoGenOp<EOT>& op = make_op(_parser, _state, init);
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//// Now the representation-independent things
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//////////////////////////////////////////////
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//// Now the representation-independent things
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//////////////////////////////////////////////
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// initialize the population - and evaluate
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// yes, this is representation indepedent once you have an eoInit
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eoPop<EOT>& pop = make_pop(_parser, _state, init);
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apply<EOT>(eval, pop);
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// initialize the population - and evaluate
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// yes, this is representation indepedent once you have an eoInit
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eoPop<EOT>& pop = make_pop(_parser, _state, init);
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apply<EOT>(eval, pop);
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// stopping criteria
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eoContinue<EOT> & term = make_continue(_parser, _state, eval);
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// output
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eoCheckPoint<EOT> & checkpoint = make_checkpoint(_parser, _state, eval, term);
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// algorithm (need the operator!)
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eoAlgo<EOT>& ga = make_algo_scalar(_parser, _state, eval, checkpoint, op);
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// stopping criteria
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eoContinue<EOT> & term = make_continue(_parser, _state, eval);
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// output
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eoCheckPoint<EOT> & checkpoint = make_checkpoint(_parser, _state, eval, term);
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// algorithm (need the operator!)
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eoAlgo<EOT>& ga = make_algo_scalar(_parser, _state, eval, checkpoint, op);
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///// End of construction of the algorith
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/////////////////////////////////////////
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// to be called AFTER all parameters have been read!!!
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make_help(_parser);
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///// End of construction of the algorith
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/////////////////////////////////////////
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// to be called AFTER all parameters have been read!!!
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make_help(_parser);
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//// GO
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///////
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std::cout << "Initial Population\n";
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pop.sortedPrintOn(std::cout);
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std::cout << std::endl;
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//// GO
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///////
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std::cout << "Initial Population\n";
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pop.sortedPrintOn(std::cout);
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std::cout << std::endl;
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run_ea(ga, pop); // run the ga
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run_ea(ga, pop); // run the ga
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std::cout << "Final Population\n";
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pop.sortedPrintOn(std::cout);
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std::cout << std::endl;
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std::cout << "Final Population\n";
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pop.sortedPrintOn(std::cout);
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std::cout << std::endl;
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}
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