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Merge from rc2.0

Browse source 
git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@2713 331e1502-861f-0410-8da2-ba01fb791d7f
This commit is contained in:
quemy 2012-07-19 09:53:26 +00:00
commit 409a1b21b8
1731 changed files with 104909 additions and 64375 deletions
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1
trunk/.mpd.conf
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secretword=Nothing

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trunk/.project
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<?xml version="1.0" encoding="UTF-8"?>
<projectDescription>
<name>trunk</name>
<comment></comment>
<projects>
</projects>
<buildSpec>
</buildSpec>
<natures>
</natures>
</projectDescription>

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trunk/AUTHORS
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@ -1,12 +1,11 @@
Jean-Charles Boisson
Main developers:
Sébastien Cahon
Clive Canape
Laetitia Jourdan
Thomas Legrand
Arnaud Liefooghe
Nouredine Melab
El-Ghazali Talbi
Alexandru-Adrian Tantar
Sebastien Verel
Jérémie Humeau
Karima Boufaras
Arnaud Liefooghe
Sebastien Verel
Nourdine Melab
Team leader:
El-Ghazali Talbi

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trunk/CMakeLists.txt Normal file
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# ParadiseO
######################################################################################
### 0) Check the CMake version
######################################################################################
cmake_minimum_required(VERSION 2.8 FATAL_ERROR)
######################################################################################
### 1) Define the project
######################################################################################
## Name
project("ParadisEO")
## Language
enable_language(CXX)
## Test the presence of a compiler
if("${CMAKE_CXX_COMPILER}" STREQUAL "" OR "${CMAKE_C_COMPILER}" STREQUAL "")
message(FATAL_ERROR "No compiler founded !")
endif()
## Versioning
set(VERSION_MAJOR 2)
set(VERSION_MINOR 0)
set(VERSION_PATCH 0)
######################################################################################
### 2) Check dependencies
######################################################################################
## Optional
include(FindDoxygen OPTIONAL)
######################################################################################
### 3) Include CMake files
######################################################################################
## Configuration file for building type and flags
include(${CMAKE_CURRENT_SOURCE_DIR}/cmake/Config.cmake)
## Macro file
include(${CMAKE_CURRENT_SOURCE_DIR}/cmake/Macro.cmake)
## Custom Targets file
include(${CMAKE_CURRENT_SOURCE_DIR}/cmake/Target.cmake)
######################################################################################
### 4) Define and add module paths : EO, MO, MOEO
######################################################################################
## Paths
set(EO_SRC_DIR "${CMAKE_SOURCE_DIR}/eo" CACHE PATH "ParadisEO-EO source directory" FORCE)
set(EO_BIN_DIR "${CMAKE_BINARY_DIR}/eo" CACHE PATH "ParadisEO-EO binary directory" FORCE)
set(MO_SRC_DIR "${CMAKE_SOURCE_DIR}/mo" CACHE PATH "ParadisMO-MO source directory" FORCE)
set(MO_BIN_DIR "${CMAKE_BINARY_DIR}/mo" CACHE PATH "ParadisMO-MO binary directory" FORCE)
set(MOEO_SRC_DIR "${CMAKE_SOURCE_DIR}/moeo" CACHE PATH "ParadisMOEO-MOEO source directory" FORCE)
set(MOEO_BIN_DIR "${CMAKE_BINARY_DIR}/moeo" CACHE PATH "ParadisMOEO-MOEO binary directory" FORCE)
set(PROBLEMS_SRC_DIR "${CMAKE_SOURCE_DIR}/problems" CACHE PATH "Problems dependant source directory" FORCE)
set(CMAKE_BASE_SOURCE_DIR ${CMAKE_SOURCE_DIR})
## EO Module
set(EO_MODULE_NAME "Evolving Object")
set(CMAKE_SOURCE_DIR ${EO_SRC_DIR})
add_subdirectory(${CMAKE_SOURCE_DIR})
if(NOT EO_ONLY)
## MO Module
set(MO_MODULE_NAME "ParadisEO-MO")
set(CMAKE_SOURCE_DIR ${MO_SRC_DIR})
add_subdirectory(${MO_SRC_DIR})
## MOEO Module
set(MOEO_MODULE_NAME "ParadisEO-MOEO")
set(CMAKE_SOURCE_DIR ${MOEO_SRC_DIR})
add_subdirectory(${MOEO_SRC_DIR})
endif()
######################################################################################
### 5) Packaging : only in release !
######################################################################################
if(${CMAKE_BUILD_TYPE} STREQUAL "Release")
include(${CMAKE_CURRENT_SOURCE_DIR}/cmake/Package.cmake)
endif()

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set(CTEST_PROJECT_NAME "ParadisEO")
set(CTEST_NIGHTLY_START_TIME "00:00:00 EST")
set(CTEST_DROP_METHOD "https")
set(CTEST_DROP_SITE "cdash.inria.fr")
set(CTEST_DROP_LOCATION "/CDash/submit.php?project=ParadisEO")
set(CTEST_DROP_SITE_CDASH TRUE)

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trunk/INSTALL Normal file
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==========================================================================================
INSTALLING PARADISEO
==========================================================================================
There is several ways to install ParadisEO, according to your needs.
==========================================================================================
WINDOWS
==========================================================================================
On Windows, and for compatibility reason, ParadisEO supply support only for MinGW.
Feel free to test with another compiler and to send us you report.
------------------------------------------------------------------------------------------
1) WITH EXE
------------------------------------------------------------------------------------------
The simpliest way ton install ParadisEO on Windows is to use the NSIS installer.
We would like to draw your attention on the fact that the PATH variable will not
be affected by the installation in order to allow anybody to install ParadisEO
without administration right. To have further information about how to use ParadisEO
in your project, see the tutorial on ParadisEO website (http://paradiseo.gforge.inria.fr/).
------------------------------------------------------------------------------------------
2) WITH CMAKE
------------------------------------------------------------------------------------------
You can also install ParadisEO using CMake. For that you must have a compiler installed,
and obviously cmake.
Then, follow UNIX instructions.
==========================================================================================
UNIX
==========================================================================================
------------------------------------------------------------------------------------------
1. WITH CMAKE
------------------------------------------------------------------------------------------
1.0 DEPENDENCIES
------------------------------------------------------------------------------------------
Required
- Compiler with OpenMP implementation (hence, Clang isn't supported atm).
Optionnal
- Doxygen for documentation
- lcov for coverage
------------------------------------------------------------------------------------------
1.1 FAST INSTALLATION
------------------------------------------------------------------------------------------
After getting ParadisEO sources from repository, you have to create a build directory in order to keep your file tree clean.
> mkdir build
> cd build
To make the installation easier, ParadisEO propose you two installation types which are "Full" and "Min".
Full corresponds examples / lessons, tests and obviously libraries.
Min corresponds to libraries and headers.
You can specified an installation type by adding the following declaration to cmake :
> cmake .. -DINSTALL_TYPE=full
> cmake .. -DINSTALL_TYPE=min
Actually, by default the generator will be "Unix Makefiles" and cmake will try to look for a C++ compiler.
Be sure you have make installed, or choose an alternative according to your configuration.
To know available generators on your computer, type cmake -help. If you are on Windows and you use MinGW, you have to specify it explicitly by adding -G "MinGW Makefiles".
To compile ParadisEO simply compile sources using your generator. For instance, if you are using Unix Makefiles, type make.
------------------------------------------------------------------------------------------
1.2 BUILD TYPE
------------------------------------------------------------------------------------------
There are 2 types of build : Release or Debug.
To explicitly change the type, add -DCMAKE_BUILD_TYPE=Debug for instance.
------------------------------------------------------------------------------------------
1.3 INSTALLATION
------------------------------------------------------------------------------------------
WARNING : This require administration rights.
To install ParadisEO in standard paths (such as /usr/lib for lib and /usr/include for headers on UNIX-like) :
> make install
------------------------------------------------------------------------------------------
2. DOCUMENTATION
------------------------------------------------------------------------------------------
There is 2 ways to build ParadisEO documentation : module by module, or all the documentation.
Targets are :
doc for all documentations
doc-eo for building EO documentation
doc-mo for MO
doc-moeo for MOEO
Each documentation are generated separatly in the module build folder.
For instance, after the generation of the MO documentation, you will find it in build/paradise-mo/doc.
------------------------------------------------------------------------------------------
3. LESSONS / EXAMPLES
------------------------------------------------------------------------------------------
Examples and lessons are generated by default.
If you want to disable lessons manually, you have to specify -DENABLE_CMAKE_TESTING=false to CMake.
If you want to build a specific lesson or example, you can check the list of available targets with make help.
All lessons are build on the same pattern : <module>Lesson<number>.
For instance, make moLesson4 will build the Lesson 4 from the MO module.
Easy, isn't it ?
------------------------------------------------------------------------------------------
4. TESTS
------------------------------------------------------------------------------------------
4.1 CTESTS
------------------------------------------------------------------------------------------
By performing tests, you can check your installation.
Testing is disable by default, except if you build with the full install type.
To enable testing, define -DENABLE_TESTING when you launch cmake.
To perform tests simply type ctest ou make test.
------------------------------------------------------------------------------------------
4.2 REPORTING
------------------------------------------------------------------------------------------
Feel free to send us reports about building, installation, tests and profiling in order to help us to improve compatibilty and installation process. Sending reports is very simple :
> ctest -D Experimental
WARNING : Reports are anonymous. CTest will also send informations about your configuration such as OS, CPU frequency, etc.

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trunk/OldDartConfig.cmake
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#############################################################################
# Dart config for report submission
#############################################################################
SET (DROP_METHOD "xmlrpc")
SET (DROP_SITE "http://dart.irisa.fr")
SET (DROP_LOCATION "ParadisEO")
SET (NIGHTLY_START_TIME "23:00:00 WEST")
#############################################################################

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trunk/README
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RELEASE
==========================================================================================
The current release is paradisEO-1.4
The current release is paradisEO-2.0
==========================================================================================
INSTALLATION
==========================================================================================
The basic installation procedure must be done in the directory
which contains the extracted archive.
The basic installation procedure must be done in a separatly folder in order to keep
your file tree clean.
--> Example : bash installParadiseo.sh
1) mkdir build
2) cd build
3) cmake ..
4) make
5) Take a cofee.
6) Congratulation, ParadiseEO is installed !
Please try source installParadiseo.sh --help for further information
Please refer to paradisEO website or INSTALL file for further information about
installation types and options.
==========================================================================================
DIRECTORY STRUCTURE
@ -21,41 +27,34 @@ Please try source installParadiseo.sh --help for further information
After unpacking the archive file, you should end up with the following
structure:
.../ Installation directory (specified with ./installParadiseo.sh)
.../
|
|
+-- AUTHORS Author list
|
|
+-- cmake/ CMake dir
|
|
+-- CMakeLists.txt For building process
|
|
+-- CTestConfig.cmake For testing process
|
|
+-- INSTALL INSTALL file
|
|
+-- install.cmake ParadisEO main install config file
+-- LICENCE Licence contents
|
|
+-- installParadiseo.sh Install script
|
+-- lib/
| | +-- /libxml2-2.7.3.tar.gz LIBXML2 archive (required for ParadisEO-PEO)
| | +-- /mpich2-1.0.8.tar.gz MPICH2 archive (required for ParadisEO-PEO)
+-- paradiseo-eo paradiseo-eo dir
|
|
+ LICENCE Licence contents
+-- paradiseo-mo paradiseo-mo dir
|
|
+-- paradiseo-eo paradiseo-eo dir
|
|
+-- paradiseo-mo paradiseo-mo dir
|
|
+-- paradiseo-moeo paradiseo-moeo dir
|
|
+-- paradiseo-old-mo paradiseo-old-mo dir
|
|
+-- paradiseo-peo paradiseo-peo dir
+-- paradiseo-moeo paradiseo-moeo dir
|
|
+-- problems classical problems evaluation functions

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######################################################################################
### 0) Detect the configuration
######################################################################################
# Inspired by Boost and SFML CMake files
if(${CMAKE_SYSTEM_NAME} MATCHES "Darwin")
set(MACOSX 1)
# detect OS X version. (use '/usr/bin/sw_vers -productVersion' to extract V from '10.V.x'.)
execute_process (COMMAND /usr/bin/sw_vers -productVersion OUTPUT_VARIABLE MACOSX_VERSION_RAW)
string(REGEX REPLACE "10\\.([0-9]).*" "\\1" MACOSX_VERSION "${MACOSX_VERSION_RAW}")
if(${MACOSX_VERSION} LESS 5)
message(FATAL_ERROR "Unsupported version of OS X : ${MACOSX_VERSION_RAW}")
return()
endif()
endif()
# Determine architecture
include(CheckTypeSize)
check_type_size(void* SIZEOF_VOID_PTR)
if("${SIZEOF_VOID_PTR}" STREQUAL "4")
set(ARCH x86)
set(LIB lib32)
elseif("${SIZEOF_VOID_PTR}" STREQUAL "8")
set(ARCH x86_64)
set(LIB lib64)
else()
message(FATAL_ERROR "Unsupported architecture")
return()
endif()
######################################################################################
### 0) Define general CXX flags for DEBUG and RELEASE
######################################################################################
add_definitions(-DDEPRECATED_MESSAGES)
set(CMAKE_CXX_FLAGS_DEBUG "-Wunknown-pragmas -O0 -g -Wall -Wextra -ansi -pedantic -fopenmp -std=c++0x" CACHE STRING "" FORCE)
set(CMAKE_CXX_FLAGS_RELEASE "-Wunknown-pragmas -O2 -fopenmp -std=c++0x" CACHE STRING "" FORCE)
######################################################################################
### 1) Define installation type
######################################################################################
if(INSTALL_TYPE STREQUAL full)
set(ENABLE_CMAKE_EXAMPLE "true" CACHE PATH "ParadisEO examples")
set(ENABLE_CMAKE_TESTING "true" CACHE PATH "ParadisEO tests")
elseif(INSTALL_TYPE STREQUAL min)
set(ENABLE_CMAKE_EXAMPLE "false" CACHE PATH "ParadisEO examples")
set(ENABLE_CMAKE_TESTING "false" CACHE PATH "ParadisEO tests")
endif()
######################################################################################
### 2) Define profiling flags
######################################################################################
if(PROFILING)
set(CMAKE_CXX_FLAGS_DEBUG "${CMAKE_CXX_FLAGS_DEBUG} -pg --coverage" CACHE STRING "" FORCE)
set(ENABLE_CMAKE_TESTING "true" CACHE STRING "" FORCE)
endif(PROFILING)
######################################################################################
### 3) Testing part
######################################################################################
if(ENABLE_CMAKE_TESTING)
enable_testing()
include(CTest REQUIRED)
endif(ENABLE_CMAKE_TESTING)
######################################################################################
### 4) Set DEBUG or RELEASE build type depending testing and profiling
######################################################################################
if(NOT DEFINED DEBUG)
set(CMAKE_BUILD_TYPE "Release" CACHE STRING "" FORCE)
else( NOT DEFINED DEBUG)
set(CMAKE_BUILD_TYPE "Debug" CACHE STRING "" FORCE)
endif(NOT DEFINED DEBUG)
######################################################################################
### 5) Build examples ?
######################################################################################
set(ENABLE_CMAKE_EXAMPLE "true" CACHE PATH "ParadisEO examples")
######################################################################################
### 6) Determine prefix for installation
######################################################################################
if(UNIX)
set(INSTALL_SUB_DIR /paradiseo)
endif()

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######################################################################################
### add_lesson(module target files)
### Macro to add a lesson to a specific module.
### Currently module must be "mo" or "moeo".
### The target name will be prefixed by module name.
### Paramaters files must have the same name as cpp file. No need to have a .param
### file. CMake will check if such a file exists.
######################################################################################
macro(add_lesson module target files)
foreach(i ${files})
if (NOT EXISTS ${CMAKE_CURRENT_SOURCE_DIR}/${i}.param)
add_executable(${i} ${i}.cpp)
else(NOT EXISTS ${CMAKE_CURRENT_SOURCE_DIR}/${i}.param)
if(${CMAKE_VERBOSE_MAKEFILE})
message(STATUS "Copying ${i}.param")
endif(${CMAKE_VERBOSE_MAKEFILE})
execute_process(
COMMAND ${CMAKE_COMMAND} -E copy_if_different
${CMAKE_CURRENT_SOURCE_DIR}/${i}.param
${CMAKE_CURRENT_BINARY_DIR}/${i}.param)
add_executable(${i}
${i}.cpp
${CMAKE_CURRENT_BINARY_DIR}/${i}.param)
endif(NOT EXISTS ${CMAKE_CURRENT_SOURCE_DIR}/${i}.param)
if(${module} MATCHES mo)
target_link_libraries(${i} eoutils ga eo)
elseif(${module} MATCHES moeo)
target_link_libraries(${i} moeo flowshop eo eoutils)
endif()
install(TARGETS ${i} RUNTIME DESTINATION share${INSTALL_SUB_DIR}/${module}/tutorial/${target} COMPONENT examples)
endforeach(i)
# Custom target
add_custom_target(${module}${target} DEPENDS
${files}
${files}.param)
endmacro()

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######################################################################################
### 0) Set up components
######################################################################################
set(CPACK_COMPONENTS_ALL
libraries
headers
tests
examples
doc
)
set(CPACK_ALL_INSTALL_TYPES Minimal Full)
######################################################################################
### 1) Describing components
######################################################################################
set(CPACK_COMPONENT_LIBRARIES_DISPLAY_NAME "Libraries")
set(CPACK_COMPONENT_LIBRARIES_DESCRIPTION "ParadisEO Libraries : EO, MO, MOEO")
set(CPACK_COMPONENT_LIBRARIES_INSTALL_TYPES Minimal Full)
set(CPACK_COMPONENT_LIBRARIES_REQUIRED)
set(CPACK_COMPONENT_HEADERS_DISPLAY_NAME "Headers")
set(CPACK_COMPONENT_HEADERS_DESCRIPTION "C++ headers for using ParadisEO")
set(CPACK_COMPONENT_HEADERS_DEPENDS libraries)
set(CPACK_COMPONENT_HEADERS_INSTALL_TYPES Minimal Full)
set(CPACK_COMPONENT_LIBRARIES_REQUIRED)
set(CPACK_COMPONENT_TESTS_DISPLAY_NAME "Tests")
set(CPACK_COMPONENT_TESTS_DESCRIPTION "Tests")
set(CPACK_COMPONENT_TESTS_DEPENDS libraries)
set(CPACK_COMPONENT_TESTS_INSTALL_TYPES Full)
set(CPACK_COMPONENT_EXAMPLES_DISPLAY_NAME "Examples")
set(CPACK_COMPONENT_EXAMPLES_DESCRIPTION "Examples and lessons")
set(CPACK_COMPONENT_EXAMPLES_DEPENDS libraries)
set(CPACK_COMPONENT_EXAMPLES_INSTALL_TYPES Full)
set(CPACK_COMPONENT_DOC_DISPLAY_NAME "Documentation")
set(CPACK_COMPONENT_DOC_DESCRIPTION "ParadisEO documentation")
set(CPACK_COMPONENT_DOC_INSTALL_TYPES Full)
######################################################################################
### 2) Set up general information about packaging
######################################################################################
# For more details: http://www.cmake.org/Wiki/CMake:Component_Install_With_CPack
#cpack package information
set(CPACK_PACKAGE_DESCRIPTION_FILE "${CMAKE_CURRENT_SOURCE_DIR}/README")
set(CPACK_RESOURCE_FILE_README "${CMAKE_CURRENT_SOURCE_DIR}/README")
set(CPACK_PACKAGE_DESCRIPTION "ParadisEO is a white-box object-oriented framework dedicated to the flexible design of metaheuristics. This template-based, ANSI-C++ compliant computation library is portable across both Windows system and sequential platforms (Unix, Linux, Mac OS X, etc.). ParadisEO is distributed under the CeCill license and can be used under several environments.")
set(CPACK_RESOURCE_FILE_LICENSE "${CMAKE_CURRENT_SOURCE_DIR}/LICENSE")
set(CPACK_PACKAGE_DESCRIPTION_SUMMARY "A Software Framework for Metaheuristics")
set(CPACK_PACKAGE_VENDOR "Inria")
set(CPACK_PACKAGE_CONTACT "paradiseo-help@lists.gforge.inria.fr")
set(CPACK_PACKAGE_VERSION ${VERSION_MAJOR}.${VERSION_MINOR}.${VERSION_PATCH})
set(CPACK_STRIP_FILES ${PACKAGE_NAME})
set(CPACK_SOURCE_STRIP_FILES "bin/${PROJECT_NAME}")
set(CPACK_PACKAGE_EXECUTABLES "${PROJECT_NAME}" "${PROJECT_NAME}")
set(CPACK_PACKAGE_VERSION_MAJOR "${VERSION_MAJOR}")
set(CPACK_PACKAGE_VERSION_MINOR "${VERSION_MINOR}")
set(CPACK_PACKAGE_VERSION_PATCH "${VERSION_PATCH}")
set(CPACK_PACKAGE_INSTALL_DIRECTORY "${PROJECT_NAME}")
set(CPACK_PACKAGE_FILE_NAME "${PROJECT_NAME}-${CPACK_PACKAGE_VERSION_MAJOR}.${CPACK_PACKAGE_VERSION_MINOR}-${ARCH}")
if(UNIX)
if(APPLE)
# Generators for Mac OS X
set(CPACK_BINARY_PACKAGEMARKER "ON")
set(CPACK_BINARY_TGZ "OFF")
set(CPACK_BINARY_STGZ "OFF")
set(CPACK_RESOURCE_FILE_README "${CMAKE_SOURCE_DIR}/mac.rtf")
else()
# Generators for Unix-like
set(CPACK_GENERATOR "DEB;RPM")
# Determine architecture
include(CheckTypeSize)
check_type_size(void* SIZEOF_VOID_PTR)
if("${SIZEOF_VOID_PTR}" STREQUAL "4")
set(CPACK_DEBIAN_PACKAGE_ARCHITECTURE i386)
elseif("${SIZEOF_VOID_PTR}" STREQUAL "8")
set(CPACK_DEBIAN_PACKAGE_ARCHITECTURE amd64)
else()
message(FATAL_ERROR "Unsupported architecture")
return()
endif()
endif()
else(UNIX)
# Generator for Windows
set(CPACK_GENERATOR "NSIS")
#set(CPACK_PACKAGE_ICON "${CMAKE_CURRENT_SOURCE_DIR}/winicon.bpm")
endif()
######################################################################################
### 3) And finally, include cpack, this is the last thing to do.
######################################################################################
include(CPack)

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######################################################################################
### Mrproper will delete all files and folders in build directory
######################################################################################
if(UNIX)
add_custom_target(mrproper COMMAND cd ${CMAKE_BINARY_DIR} && rm -rf *)
endif(UNIX)
######################################################################################
### Doc-all enable to build all documentations in one target
######################################################################################
if(DOXYGEN_FOUND AND DOXYGEN_EXECUTABLE)
add_custom_target(doc
COMMAND make doc-eo
COMMAND make doc-mo
COMMAND make doc-moeo
)
endif(DOXYGEN_FOUND AND DOXYGEN_EXECUTABLE)
######################################################################################
### Perform covering test if lcov is found
######################################################################################
if(PROFILING)
find_program(LCOV
NAMES lcov
PATHS
"/usr/local/bin /usr/bin [HKEY_LOCAL_MACHINE\\SOFTWARE\\Rational Software\\Purify\\Setup;InstallFolder] [HKEY_CURRENT_USER\\Software]"
DOC "Path to the memory checking command, used for memory error detection.")
if(LCOV)
add_custom_target(coverage
COMMAND make
COMMAND ctest
COMMAND lcov -d . -c -o output.info
COMMAND lcov -r output.info '*/tutorial*' -o output.info
COMMAND lcov -r output.info '/usr*' -o output.info
COMMAND lcov -r output.info '*/test*' -o output.info
COMMAND genhtml output.info -o coverage/ --highlight --legend
)
else(LCOV)
message(STATUS "Could NOT find Lcov")
endif(LCOV)
endif(PROFILING)

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trunk/cmake/module/FindParadiseo.cmake Normal file
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# File: FindParadiseo.cmake
# Version: 0.0.1
#
# The following variables are filled out:
# - PARADISEO_INCLUDE_DIR : EO, MO and MOEO source dir
# - EO_INCLUDE_DIR : EO source dir
# - MO_INCLUDE_DIR : MO source dir
# - MOEO_INCLUDE_DIR : MOEO source dir. WARNING : You have ton include MO before !
# - PARADISEO_LIBRARIES : the list of all required modules
# - PARADISEO_XXX_LIBRARY : the name of the library to link for the required module
# - PARADISEO_XXX_FOUND : true if the required module is found
# - PARADISEO_FOUND : true if all required modules are found
#
# Here are the components:
# - eo
# - PyEO
# - es
# - ga
# - cma
# - flowshop
# - moeo
# You can use find_package(Paradiseo COMPONENTS ... ) to enable one or several components. If you not specifie component, all components will be load.
#
# Output
# ------
#
# example:
# find_package(Paradiseo COMPONENTS eo eoutils cma es flowshop ga moeo REQUIRED)
# include_directories(${PARADISEO_INCLUDE_DIR})
# add_executable(example ...)
# target_link_libraries(examplep ${PARADISEO_LIBRARIES})
if(UNIX)
set(INSTALL_SUB_DIR /paradiseo)
endif()
# enabled components
if ("${Paradiseo_FIND_COMPONENTS}" STREQUAL "")
set(PARADISEO_LIBRARIES_TO_FIND eo eoutils cma es flowshop ga moeo)
else()
set(PARADISEO_LIBRARIES_TO_FIND ${Paradiseo_FIND_COMPONENTS})
endif()
#set the build directory
set(BUILD_DIR build)
# Path
set(PARADISEO_SRC_PATHS
${PARADISEO_ROOT}
$ENV{PARADISEO_ROOT}
/usr/local/
/usr/
/sw # Fink
/opt/local/ # DarwinPorts
/opt/csw/ # Blastwave
/opt/
[KEY_CURRENT_USER\\Software\\Inria\\ParadisEO]
[HKEY_LOCAL_MACHINE\\Software\\Inria\\ParadiseEO]
)
find_path(EO_INCLUDE_DIR eo
PATH_SUFFIXES include${INSTALL_SUB_DIR}/eo eo/src
PATHS ${PARADISEO_SRC_PATHS})
find_path(MO_INCLUDE_DIR mo
PATH_SUFFIXES include${INSTALL_SUB_DIR}/mo mo/src
PATHS ${PARADISEO_SRC_PATHS})
find_path(MOEO_INCLUDE_DIR moeo
PATH_SUFFIXES include${INSTALL_SUB_DIR}/moeo moeo/src
PATHS ${PARADISEO_SRC_PATHS})
set(PARADISEO_INCLUDE_DIR ${EO_INCLUDE_DIR} ${MO_INCLUDE_DIR} ${MOEO_INCLUDE_DIR})
# find the requested modules
set(PARADISEO_FOUND TRUE) # will be set to false if one of the required modules is not found
set(FIND_PARADISEO_LIB_PATHS
${PARADISEO_ROOT}/${BUILD_DIR}
$ENV{PARADISEO_ROOT}
/usr/local/
/usr/
/sw # Fink
/opt/local/ # DarwinPorts
/opt/csw/ # Blastwave
/opt/
[KEY_CURRENT_USER\\Software\\Inria\\ParadisEO]
[HKEY_LOCAL_MACHINE\\Software\\Inria\\ParadiseEO]
)
#Suffixes
set(PARADISEO_LIB_PATHS_SUFFIXES
eo/lib
mo/lib
moeo/lib
moeo/tutorial/examples/flowshop/lib #For flowshop library
lib
lib32
lib64
)
foreach(FIND_PARADISEO_COMPONENT ${PARADISEO_LIBRARIES_TO_FIND})
string(TOUPPER ${FIND_PARADISEO_COMPONENT} FIND_PARADISEO_COMPONENT_UPPER)
# release library
find_library(PARADISEO_${FIND_PARADISEO_COMPONENT_UPPER}_LIBRARY
NAMES ${FIND_PARADISEO_COMPONENT}
PATH_SUFFIXES ${PARADISEO_LIB_PATHS_SUFFIXES}
PATHS ${FIND_PARADISEO_LIB_PATHS})
if (PARADISEO_${FIND_PARADISEO_COMPONENT_UPPER}_LIBRARY)
# library found
set(PARADISEO_${FIND_PARADISEO_COMPONENT_UPPER}_FOUND TRUE)
else()
# library not found
set(PARADISEO_FOUND FALSE)
set(PARADISEO_${FIND_PARADISEO_COMPONENT_UPPER}_FOUND FALSE)
set(FIND_PARADISEO_MISSING "${FIND_PARADISEO_MISSING} ${FIND_PARADISEO_COMPONENT}")
endif()
set(PARADISEO_LIBRARIES ${PARADISEO_LIBRARIES} "${PARADISEO_${FIND_PARADISEO_COMPONENT_UPPER}_LIBRARY}")
endforeach()
# handle result
if(PARADISEO_FOUND)
message(STATUS "Found ParadisEO includes :")
message(${EO_INCLUDE_DIR})
message(${MO_INCLUDE_DIR})
message(${MOEO_INCLUDE_DIR})
else()
# include directory or library not found
message(FATAL_ERROR "Could NOT find ParadisEO (missing : ${FIND_PARADISEO_MISSING})")
endif()

12
trunk/eo/AUTHORS Normal file
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@ -0,0 +1,12 @@
Pedro Angel Castillo Valdivieso
Juan Julian Merelo Guervos
Victor Manuel Rivas Santos
Gustavo Romero Lopez
Maarten Keijzer
Marc Schoenauer
Jeroen Eggermont
Jochen K<>pper
Thomas Legrand
Clive Canape
Johann Dréo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>

44
trunk/eo/BuildConfig.cmake Normal file
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# the user should choose the build type on windows environments,excepted under cygwin (default=none)
#SET(CMAKE_DEFAULT_BUILD_TYPE "Release" CACHE STRING "Variable that stores the default CMake build type" FORCE)
#SET(CMAKE_BUILD_TYPE Debug) # allows to enable assert calls and -g flag
FIND_PROGRAM(MEMORYCHECK_COMMAND
NAMES purify valgrind
PATHS
"/usr/local/bin /usr/bin [HKEY_LOCAL_MACHINE\\SOFTWARE\\Rational Software\\Purify\\Setup;InstallFolder]"
DOC "Path to the memory checking command, used for memory error detection.")
IF(NOT CMAKE_BUILD_TYPE)
SET( CMAKE_BUILD_TYPE
${CMAKE_DEFAULT_BUILD_TYPE} CACHE STRING
"Choose the type of build, options are: Debug Release RelWithDebInfo MinSizeRel."
FORCE)
ENDIF(NOT CMAKE_BUILD_TYPE)
IF(WIN32 AND NOT CYGWIN)
IF(CMAKE_CXX_COMPILER MATCHES cl)
IF(NOT WITH_SHARED_LIBS)
IF(CMAKE_GENERATOR STREQUAL "Visual Studio 8 2005" OR CMAKE_GENERATOR STREQUAL "Visual Studio 9 2008")
SET(CMAKE_CXX_FLAGS "/nologo /Gy")
SET(CMAKE_CXX_FLAGS_DEBUG "/W3 /MTd /Z7 /Od")
SET(CMAKE_CXX_FLAGS_RELEASE "/w /MT /O2 /wd4530")
SET(CMAKE_CXX_FLAGS_MINSIZEREL "/MT /O2")
SET(CMAKE_CXX_FLAGS_RELWITHDEBINFO "/MTd /Z7 /Od")
SET(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} /SUBSYSTEM:CONSOLE")
ENDIF(CMAKE_GENERATOR STREQUAL "Visual Studio 8 2005" OR CMAKE_GENERATOR STREQUAL "Visual Studio 9 2008")
ENDIF(NOT WITH_SHARED_LIBS)
ENDIF(CMAKE_CXX_COMPILER MATCHES cl)
ELSE(WIN32 AND NOT CYGWIN)
IF(CMAKE_COMPILER_IS_GNUCXX)
# SET(CMAKE_CXX_FLAGS_DEBUG "${CMAKE_CXX_FLAGS_DEBUG} -O0 -g -fprofile-arcs -ftest-coverage -Wall -Wextra -Wno-unused-parameter")
SET(CMAKE_CXX_FLAGS_DEBUG "${CMAKE_CXX_FLAGS_DEBUG} -O0 -g -Wall -Wextra -Wno-unused-parameter -Wunknown-pragmas")
SET(CMAKE_CXX_FLAGS_RELEASE "${CMAKE_CXX_FLAGS_RELEASE} -O3 -Wunknown-pragmas")
SET(CMAKE_CXX_FLAGS_MINSIZEREL "${CMAKE_CXX_FLAGS_MINSIZEREL} -O6 -Wunknown-pragmas")
ENDIF(CMAKE_COMPILER_IS_GNUCXX)
ENDIF(WIN32 AND NOT CYGWIN)
IF(CMAKE_BUILD_TYPE MATCHES Debug)
ADD_DEFINITIONS(-DCMAKE_VERBOSE_MAKEFILE=ON)
ENDIF(CMAKE_BUILD_TYPE MATCHES Debug)

9882
trunk/eo/CHANGELOG Normal file
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File diff suppressed because it is too large Load diff

146
trunk/eo/CMakeLists.txt Normal file
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CMAKE_MINIMUM_REQUIRED(VERSION 2.6)
######################################################################################
### 0) If you want to set your variables in eo-conf.cmake and avoid the cmd line
######################################################################################
INCLUDE(eo-conf.cmake OPTIONAL)
######################################################################################
######################################################################################
### 1) Main project config
######################################################################################
# set the project namef and other variables
PROJECT(EO)
# CMake > 2.8 is needed, because of the FindOpenMP feature
#cmake_minimum_required(VERSION 2.8)
#SET(PROJECT_VERSION_MAJOR 1)
#SET(PROJECT_VERSION_MINOR 1)
#SET(PROJECT_VERSION_PATCH 1)
SET(PROJECT_VERSION "${PROJECT_VERSION_MAJOR}.${PROJECT_VERSION_MINOR}.${PROJECT_VERSION_PATCH}" CACHE STRING "Package version" FORCE)
SET(VERSION "${PROJECT_VERSION_MAJOR}.${PROJECT_VERSION_MINOR}${PROJECT_VERSION_MISC}" CACHE STRING "Global version" FORCE)
SET(GLOBAL_VERSION "${VERSION}")
SET(PACKAGE_BUGREPORT "eodev-help@sourceforge.net" CACHE STRING "Package bug report" FORCE)
SET(PACKAGE_NAME "Evolving Objects" CACHE STRING "Package name" FORCE)
SET(PACKAGE_STRING "${PACKAGE_NAME} ${PACKAGE_VERSION}"CACHE STRING "Package string full name" FORCE)
SET(PACKAGE_TARNAME "eo" CACHE STRING "Package tar name" FORCE)
# regular expression checking
INCLUDE_REGULAR_EXPRESSION("^.*$" "^$")
# set a language for the entire project.
ENABLE_LANGUAGE(CXX)
ENABLE_LANGUAGE(C)
######################################################################################
#####################################################################################
### 2) Include required modules / configuration files
#####################################################################################
FIND_PACKAGE(OpenMP)
IF(OPENMP_FOUND)
SET(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} ${OpenMP_C_FLAGS}")
SET(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${OpenMP_CXX_FLAGS}")
ENDIF()
INCLUDE(CMakeBackwardCompatibilityCXX)
INCLUDE(FindDoxygen)
INCLUDE(FindGnuplot)
INCLUDE(CheckLibraryExists)
IF(UNIX)
INCLUDE(ConfigureChecks.cmake)
ENDIF(UNIX)
INCLUDE(Dart OPTIONNAL)
# now create config headers
CONFIGURE_FILE(config.h.cmake ${CMAKE_CURRENT_BINARY_DIR}/config.h)
# now create config install_symlink script file
CONFIGURE_FILE(install_symlink.py.cmake ${CMAKE_CURRENT_BINARY_DIR}/install_symlink.py)
# now create PKGBUILD file for archlinux package manager
CONFIGURE_FILE(PKGBUILD.cmake ${CMAKE_CURRENT_BINARY_DIR}/PKGBUILD)
# Set a special flag if the environment is windows (should do the same in a config.g file)
IF (WIN32)
ADD_DEFINITIONS(-D_WINDOWS=1)
ENDIF (WIN32)
######################################################################################
#####################################################################################
### 3) Manage the build type
#####################################################################################
INCLUDE(BuildConfig.cmake)
######################################################################################
######################################################################################
### compilation of examples?
######################################################################################
SET(ENABLE_CMAKE_EXAMPLE TRUE CACHE BOOL "Enable copy of benchs and parameters file?")
######################################################################################
######################################################################################
### 4) Test config
######################################################################################
IF (ENABLE_CMAKE_TESTING)
ENABLE_TESTING()
ENDIF (ENABLE_CMAKE_TESTING)
######################################################################################
######################################################################################
### 5) Where must cmake go now ?
######################################################################################
#ADD_SUBDIRECTORY(app)
ADD_SUBDIRECTORY(doc)
ADD_SUBDIRECTORY(src)
ADD_SUBDIRECTORY(test)
ADD_SUBDIRECTORY(tutorial)
######################################################################################
######################################################################################
### 6) Install pkg-config config file for EO
######################################################################################
SET(PCPREFIX "/usr")
SET(PCFLAGS "-leoutils -leo -les -lga -lcma -lgcov")
SET(PCINCLUDEDIR "eo")
CONFIGURE_FILE(pc.cmake ${CMAKE_CURRENT_BINARY_DIR}/eo.pc)
INSTALL(FILES ${CMAKE_CURRENT_BINARY_DIR}/eo.pc DESTINATION ${LIB}/pkgconfig COMPONENT headers)
######################################################################################
######################################################################################
### 7) Include packaging
######################################################################################
INCLUDE(Packaging.cmake)
######################################################################################

502
trunk/eo/COPYING Normal file
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@ -0,0 +1,502 @@
GNU LESSER GENERAL PUBLIC LICENSE
Version 2.1, February 1999
Copyright (C) 1991, 1999 Free Software Foundation, Inc.
59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Everyone is permitted to copy and distribute verbatim copies
of this license document, but changing it is not allowed.
[This is the first released version of the Lesser GPL. It also counts
as the successor of the GNU Library Public License, version 2, hence
the version number 2.1.]
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OTHER PARTIES PROVIDE THE LIBRARY "AS IS" WITHOUT WARRANTY OF ANY
KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE
IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
PURPOSE. THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE
LIBRARY IS WITH YOU. SHOULD THE LIBRARY PROVE DEFECTIVE, YOU ASSUME
THE COST OF ALL NECESSARY SERVICING, REPAIR OR CORRECTION.
16. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN
WRITING WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY
AND/OR REDISTRIBUTE THE LIBRARY AS PERMITTED ABOVE, BE LIABLE TO YOU
FOR DAMAGES, INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR
CONSEQUENTIAL DAMAGES ARISING OUT OF THE USE OR INABILITY TO USE THE
LIBRARY (INCLUDING BUT NOT LIMITED TO LOSS OF DATA OR DATA BEING
RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD PARTIES OR A
FAILURE OF THE LIBRARY TO OPERATE WITH ANY OTHER SOFTWARE), EVEN IF
SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF SUCH
DAMAGES.
END OF TERMS AND CONDITIONS
How to Apply These Terms to Your New Libraries
If you develop a new library, and you want it to be of the greatest
possible use to the public, we recommend making it free software that
everyone can redistribute and change. You can do so by permitting
redistribution under these terms (or, alternatively, under the terms of the
ordinary General Public License).
To apply these terms, attach the following notices to the library. It is
safest to attach them to the start of each source file to most effectively
convey the exclusion of warranty; and each file should have at least the
"copyright" line and a pointer to where the full notice is found.
<one line to give the library's name and a brief idea of what it does.>
Copyright (C) <year> <name of author>
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Also add information on how to contact you by electronic and paper mail.
You should also get your employer (if you work as a programmer) or your
school, if any, to sign a "copyright disclaimer" for the library, if
necessary. Here is a sample; alter the names:
Yoyodyne, Inc., hereby disclaims all copyright interest in the
library `Frob' (a library for tweaking knobs) written by James Random Hacker.
<signature of Ty Coon>, 1 April 1990
Ty Coon, President of Vice
That's all there is to it!

7
trunk/eo/CTestConfig.cmake Normal file
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@ -0,0 +1,7 @@
set(CTEST_PROJECT_NAME "ParadisEO")
set(CTEST_NIGHTLY_START_TIME "00:00:00 EST")
set(CTEST_DROP_METHOD "http")
set(CTEST_DROP_SITE "cdash.inria.fr")
set(CTEST_DROP_LOCATION "/CDash/submit.php?project=ParadisEO")
set(CTEST_DROP_SITE_CDASH TRUE)

29
trunk/eo/ConfigureChecks.cmake Normal file
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@ -0,0 +1,29 @@
# NOTE: only add something here if it is really needed by EO
INCLUDE(CheckIncludeFile)
INCLUDE(CheckIncludeFiles)
INCLUDE(CheckSymbolExists)
INCLUDE(CheckFunctionExists)
INCLUDE(CheckLibraryExists)
CHECK_LIBRARY_EXISTS(m cos "/usr/lib" HAVE_LIBM)
CHECK_INCLUDE_FILES(math.h "math.h" HAVE_MATH_H)
CHECK_INCLUDE_FILES(stdio.h "stdio.h" HAVE_STDIO_H)
CHECK_INCLUDE_FILES(stdlib.h "stdlib.h" HAVE_STDLIB_H)
CHECK_INCLUDE_FILES(string.h "string.h" HAVE_STRING_H)
CHECK_INCLUDE_FILES(strings.h "strings.h" HAVE_STRINGS_H)
CHECK_INCLUDE_FILES(malloc.h "malloc.h" HAVE_MALLOC_H)
CHECK_INCLUDE_FILES(limits.h "limits.h" HAVE_LIMITS_H)
CHECK_INCLUDE_FILES(unistd.h "unistd.h" HAVE_UNISTD_H)
CHECK_INCLUDE_FILES(stdint.h "stdint.h" HAVE_STDINT_H)
# Use check_symbol_exists to check for symbols in a reliable
# cross-platform manner. It accounts for different calling
# conventions and the possibility that the symbol is defined as a
# macro. Note that some symbols require multiple includes in a
# specific order. Refer to the man page for each symbol for which a
# check is to be added to get the proper set of headers. Example :
#check_symbol_exists(asymbol "symbole.h" HAVE_SYMBOLE)

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