modif cmake configuration
git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1277 331e1502-861f-0410-8da2-ba01fb791d7f
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######################################################################################
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### 0) Set the compiler and define targets to easily run the lessons
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######################################################################################
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SET (CMAKE_CXX_COMPILER mpicxx)
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ADD_CUSTOM_TARGET(install DEPENDS ${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson5/param ${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson5/schema.xml)
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ADD_CUSTOM_COMMAND(
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TARGET install
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POST_BUILD
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COMMAND ${CMAKE_COMMAND}
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ARGS -E copy_if_different
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${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson5/param
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${ParadisEO-PEO_BINARY_DIR}/tutorial/Lesson5)
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ADD_CUSTOM_COMMAND(
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TARGET install
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POST_BUILD
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COMMAND ${CMAKE_COMMAND}
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ARGS -E copy_if_different
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${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson5/schema.xml
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${ParadisEO-PEO_BINARY_DIR}/tutorial/Lesson5)
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######################################################################################
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######################################################################################
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### 1) Include the sources
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######################################################################################
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INCLUDE_DIRECTORIES(${EO_SRC_DIR}/src ${MOEO_SRC_DIR}/src ${MO_SRC_DIR}/src ${ParadisEO-PEO_SOURCE_DIR}/src)
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######################################################################################
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######################################################################################
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### 2) Specify where CMake can find the libraries
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######################################################################################
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LINK_DIRECTORIES(${EO_BIN_DIR}/lib ${ParadisEO-PEO_BINARY_DIR}/lib)
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######################################################################################
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######################################################################################
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### 3) Define your target(s): just an executable here
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######################################################################################
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ADD_EXECUTABLE(ea main.cpp)
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ADD_DEPENDENCIES(ea peo rmc_mpi)
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######################################################################################
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######################################################################################
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### 4) Optionnal: define properties
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######################################################################################
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SET(Lesson5_VERSION ${GLOBAL_VERSION})
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SET_TARGET_PROPERTIES(ea PROPERTIES VERSION "${Lesson5_VERSION}")
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######################################################################################
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######################################################################################
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### 5) Link the librairies
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######################################################################################
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TARGET_LINK_LIBRARIES(ea ${XML2_LIBS} peo rmc_mpi eo eoutils peo)
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######################################################################################
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313
branches/cmakemodif/paradiseo-peo/tutorial/Lesson5/main.cpp
Normal file
313
branches/cmakemodif/paradiseo-peo/tutorial/Lesson5/main.cpp
Normal file
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/*
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* <main.cpp>
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* Copyright (C) DOLPHIN Project-Team, INRIA Futurs, 2006-2008
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* (C) OPAC Team, INRIA, 2008
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*
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* Clive Canape
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*
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* This software is governed by the CeCILL license under French law and
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* abiding by the rules of distribution of free software. You can use,
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* modify and/ or redistribute the software under the terms of the CeCILL
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* license as circulated by CEA, CNRS and INRIA at the following URL
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* "http://www.cecill.info".
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*
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* As a counterpart to the access to the source code and rights to copy,
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* modify and redistribute granted by the license, users are provided only
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* with a limited warranty and the software's author, the holder of the
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* economic rights, and the successive licensors have only limited liability.
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*
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* In this respect, the user's attention is drawn to the risks associated
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* with loading, using, modifying and/or developing or reproducing the
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* software by the user in light of its specific status of free software,
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* that may mean that it is complicated to manipulate, and that also
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* therefore means that it is reserved for developers and experienced
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* professionals having in-depth computer knowledge. Users are therefore
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* encouraged to load and test the software's suitability as regards their
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* requirements in conditions enabling the security of their systems and/or
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* data to be ensured and, more generally, to use and operate it in the
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* same conditions as regards security.
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* The fact that you are presently reading this means that you have had
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* knowledge of the CeCILL license and that you accept its terms.
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*
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* ParadisEO WebSite : http://paradiseo.gforge.inria.fr
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* Contact: paradiseo-help@lists.gforge.inria.fr
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*
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*/
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#include <peo>
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#define SIZE 10
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#define DEF_DOMAIN 100
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#define POP_SIZE 100
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#define SELECT_RATE 0.8
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#define NB_GEN 1
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#define XOVER_P 0.75
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#define MUT_P 0.05
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#define MIGRATIONS_AT_N_GENERATIONS 5
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#define NUMBER_OF_MIGRANTS 10
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struct Representation : public eoVector< eoMinimizingFitness, double >
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{
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Representation()
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{
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resize( SIZE );
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}
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};
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struct Init : public eoInit< Representation >
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{
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void operator()( Representation& rep )
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{
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for ( int i = 0; i < SIZE; i++ )
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{
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rep[ i ] = (rng.uniform() - 0.5) * DEF_DOMAIN;
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}
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}
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};
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struct Eval : public eoEvalFunc< Representation >
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{
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void operator()( Representation& rep )
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{
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double fitnessValue = 0.0;
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for ( int i = 0; i < SIZE; i++ )
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{
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fitnessValue += pow( rep[ i ], 2.0 );
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}
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rep.fitness( fitnessValue );
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}
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};
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struct MutationOp : public eoMonOp< Representation >
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{
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bool operator()( Representation& rep )
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{
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unsigned int pos = (unsigned int)( rng.uniform() * SIZE );
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rep[ pos ] = (rng.uniform() - 0.5) * DEF_DOMAIN;
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rep.invalidate();
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return true;
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}
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};
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struct XoverOp : public eoQuadOp< Representation >
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{
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bool operator()( Representation& repA, Representation& repB )
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{
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static Representation offA, offB;
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double lambda = rng.uniform();
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for ( int i = 0; i < SIZE; i++ )
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{
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offA[ i ] = lambda * repA[ i ] + ( 1.0 - lambda ) * repB[ i ];
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offB[ i ] = lambda * repB[ i ] + ( 1.0 - lambda ) * repA[ i ];
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}
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repA = offA;
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repB = offB;
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repA.invalidate();
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repB.invalidate();
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return true;
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}
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};
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void pack( const Representation& rep )
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{
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if ( rep.invalid() ) ::pack( (unsigned int)0 );
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else
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{
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::pack( (unsigned int)1 );
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::pack( (double)(rep.fitness()) );
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}
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for ( unsigned int index = 0; index < SIZE; index++ )
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{
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::pack( (double)rep[ index ] );
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}
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}
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void unpack( Representation& rep )
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{
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eoScalarFitness<double, std::greater<double> > fitness;
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unsigned int validFitness;
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unpack( validFitness );
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if ( validFitness )
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{
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double fitnessValue;
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::unpack( fitnessValue );
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rep.fitness( fitnessValue );
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}
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else
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{
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rep.invalidate();
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}
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double value;
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for ( unsigned int index = 0; index < SIZE; index++ )
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{
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::unpack( value );
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rep[ index ] = value;
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}
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}
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int main( int __argc, char** __argv )
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{
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rng.reseed( time( NULL ) );
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srand( time( NULL ) );
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peo::init( __argc, __argv );
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eoParser parser ( __argc, __argv );
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eoValueParam < unsigned int > nbGenerations( NB_GEN, "maxGen");
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parser.processParam ( nbGenerations );
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eoValueParam < double > selectionRate( SELECT_RATE, "select");
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parser.processParam ( selectionRate );
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RingTopology ring,topo;
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unsigned int dataA, dataB, dataC;
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dataA = 1;
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dataB = 5;
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dataC = 10;
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peoSyncDataTransfer dataTransfer( dataA, ring );
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peoSyncDataTransfer dataTransferb( dataB, ring );
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peoSyncDataTransfer dataTransferc( dataC, ring );
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Init init;
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Eval eval;
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eoPop< Representation > pop( POP_SIZE, init );
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MutationOp mut;
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XoverOp xover;
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eoSGATransform< Representation > transform( xover, XOVER_P, mut, MUT_P );
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eoStochTournamentSelect< Representation > select;
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eoSelectMany< Representation > selectN( select, selectionRate.value() );
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eoSSGAStochTournamentReplacement< Representation > replace( 1.0 );
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eoWeakElitistReplacement< Representation > elitReplace( replace );
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eoGenContinue< Representation > cont( nbGenerations.value() );
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eoCheckPoint< Representation > checkpoint( cont );
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eoEasyEA< Representation > algo( checkpoint, eval, selectN, transform, elitReplace );
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//-------------------------------------------------------------------------------------------------------------
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// MIGRATION CONTEXT DEFINITION
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eoPeriodicContinue< Representation > mig_conti( MIGRATIONS_AT_N_GENERATIONS );
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eoContinuator<Representation> mig_cont(mig_conti,pop);
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eoRandomSelect<Representation> mig_select_one;
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eoSelector <Representation, eoPop<Representation> > mig_select (mig_select_one,NUMBER_OF_MIGRANTS,pop);
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eoPlusReplacement<Representation> replace_one;
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eoReplace <Representation, eoPop<Representation> > mig_replace (replace_one,pop);
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// peoSyncIslandMig< eoPop< Representation >, eoPop< Representation > > mig(MIGRATIONS_AT_N_GENERATIONS,mig_select,mig_replace,topo);
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peoAsyncIslandMig< eoPop< Representation >, eoPop< Representation > > mig(mig_cont,mig_select,mig_replace,topo);
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checkpoint.add( mig );
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//-------------------------------------------------------------------------------------------------------------
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eoPop< Representation > pop2( POP_SIZE, init );
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eoSGATransform< Representation > transform2( xover, XOVER_P, mut, MUT_P );
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eoStochTournamentSelect< Representation > select2;
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eoSelectMany< Representation > selectN2( select2, selectionRate.value() );
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eoSSGAStochTournamentReplacement< Representation > replace2( 1.0 );
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eoWeakElitistReplacement< Representation > elitReplace2( replace2 );
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eoGenContinue< Representation > cont2( nbGenerations.value() );
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eoCheckPoint< Representation > checkpoint2( cont2 );
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eoEasyEA< Representation > algo2( checkpoint2, eval, selectN2, transform2, elitReplace2 );
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//-------------------------------------------------------------------------------------------------------------
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// MIGRATION CONTEXT DEFINITION
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eoPeriodicContinue< Representation > mig_conti2( MIGRATIONS_AT_N_GENERATIONS );
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eoContinuator<Representation> mig_cont2(mig_conti2,pop2);
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eoRandomSelect<Representation> mig_select_one2;
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eoSelector <Representation, eoPop<Representation> > mig_select2 (mig_select_one2,NUMBER_OF_MIGRANTS,pop2);
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eoPlusReplacement<Representation> replace_one2;
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eoReplace <Representation, eoPop<Representation> > mig_replace2 (replace_one2,pop2);
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// peoSyncIslandMig< eoPop< Representation >, eoPop< Representation > > mig2(MIGRATIONS_AT_N_GENERATIONS,mig_select2,mig_replace2,topo);
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peoAsyncIslandMig< eoPop< Representation >, eoPop< Representation > > mig2(mig_cont2,mig_select2,mig_replace2,topo);
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checkpoint2.add( mig2 );
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//-------------------------------------------------------------------------------------------------------------
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eoPop< Representation > pop3( POP_SIZE, init );
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eoSGATransform< Representation > transform3( xover, XOVER_P, mut, MUT_P );
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eoStochTournamentSelect< Representation > select3;
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eoSelectMany< Representation > selectN3( select3, selectionRate.value() );
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eoSSGAStochTournamentReplacement< Representation > replace3( 1.0 );
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eoWeakElitistReplacement< Representation > elitReplace3( replace3 );
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eoGenContinue< Representation > cont3( nbGenerations.value() );
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eoCheckPoint< Representation > checkpoint3( cont3 );
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eoEasyEA< Representation > algo3( checkpoint3, eval, selectN3, transform3, elitReplace3 );
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//-------------------------------------------------------------------------------------------------------------
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// MIGRATION CONTEXT DEFINITION
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eoPeriodicContinue< Representation > mig_conti3( MIGRATIONS_AT_N_GENERATIONS );
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eoContinuator<Representation> mig_cont3(mig_conti3,pop3);
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eoRandomSelect<Representation> mig_select_one3;
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eoSelector <Representation, eoPop<Representation> > mig_select3 (mig_select_one3,NUMBER_OF_MIGRANTS,pop3);
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eoPlusReplacement<Representation> replace_one3;
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eoReplace <Representation, eoPop<Representation> > mig_replace3 (replace_one3,pop3);
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// peoSyncIslandMig< eoPop< Representation >, eoPop< Representation > > mig3(MIGRATIONS_AT_N_GENERATIONS,mig_select3,mig_replace3,topo);
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peoAsyncIslandMig< eoPop< Representation >, eoPop< Representation > > mig3(mig_cont3,mig_select3,mig_replace3,topo);
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checkpoint3.add( mig3 );
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//-------------------------------------------------------------------------------------------------------------
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peoWrapper algoPar( algo, pop );
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mig.setOwner( algoPar );
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checkpoint.add( dataTransfer );
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dataTransfer.setOwner( algoPar );
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peoWrapper algoPar2( algo2, pop2 );
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mig2.setOwner( algoPar2 );
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checkpoint2.add( dataTransferb );
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dataTransferb.setOwner( algoPar2 );
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peoWrapper algoPar3( algo3, pop3 );
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mig3.setOwner( algoPar3 );
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checkpoint3.add( dataTransferc );
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dataTransferc.setOwner( algoPar3 );
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peo::run();
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peo::finalize();
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if ( getNodeRank() == 1 )
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std::cout << "A: " << dataA << std::endl;
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if ( getNodeRank() == 2 )
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std::cout << "B: " << dataB << std::endl;
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if ( getNodeRank() == 3 )
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std::cout << "C: " << dataC << std::endl;
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return 0;
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}
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13
branches/cmakemodif/paradiseo-peo/tutorial/Lesson5/param
Normal file
13
branches/cmakemodif/paradiseo-peo/tutorial/Lesson5/param
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@ -0,0 +1,13 @@
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###### Param ######
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--maxGen=1
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--select=0.8
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## miscallenous parameters
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--debug=false
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## deployment schema
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--schema=schema.xml
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@ -0,0 +1,23 @@
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<?xml version="1.0"?>
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<schema>
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<group scheduler="0">
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<node name="0" num_workers="0">
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</node>
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<node name="1" num_workers="0">
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<runner>1</runner>
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</node>
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<node name="2" num_workers="1">
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<runner>2</runner>
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</node>
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<node name="3" num_workers="1">
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<runner>3</runner>
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</node>
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</group>
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</schema>
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