modif cmake configuration

git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@1277 331e1502-861f-0410-8da2-ba01fb791d7f
This commit is contained in:
jhumeau 2008-12-03 14:41:25 +00:00
commit 350bdfc7de
1261 changed files with 144616 additions and 0 deletions

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######################################################################################
### 0) Set the compiler and define targets to easily run the lessons
######################################################################################
SET (CMAKE_CXX_COMPILER mpicxx)
ADD_CUSTOM_TARGET(install DEPENDS ${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson1/param ${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson1/schema.xml)
ADD_CUSTOM_COMMAND(
TARGET install
POST_BUILD
COMMAND ${CMAKE_COMMAND}
ARGS -E copy_if_different
${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson1/param
${ParadisEO-PEO_BINARY_DIR}/tutorial/Lesson1)
ADD_CUSTOM_COMMAND(
TARGET install
POST_BUILD
COMMAND ${CMAKE_COMMAND}
ARGS -E copy_if_different
${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson1/schema.xml
${ParadisEO-PEO_BINARY_DIR}/tutorial/Lesson1)
######################################################################################
######################################################################################
### 1) Include the sources
######################################################################################
INCLUDE_DIRECTORIES(${EO_SRC_DIR}/src ${MOEO_SRC_DIR}/src ${MO_SRC_DIR}/src ${ParadisEO-PEO_SOURCE_DIR}/src)
######################################################################################
######################################################################################
### 2) Specify where CMake can find the libraries
######################################################################################
LINK_DIRECTORIES(${EO_BIN_DIR}/lib ${ParadisEO-PEO_BINARY_DIR}/lib)
######################################################################################
######################################################################################
### 3) Define your target(s): just an executable here
######################################################################################
ADD_EXECUTABLE(pso mainPSO.cpp)
ADD_DEPENDENCIES(pso peo rmc_mpi)
ADD_EXECUTABLE(ea mainEA.cpp)
ADD_DEPENDENCIES(ea peo rmc_mpi)
######################################################################################
######################################################################################
### 4) Optionnal: define properties
######################################################################################
SET(LESSON1_VERSION ${GLOBAL_VERSION})
SET_TARGET_PROPERTIES(pso PROPERTIES VERSION "${LESSON1_VERSION}")
SET_TARGET_PROPERTIES(ea PROPERTIES VERSION "${LESSON1_VERSION}")
######################################################################################
######################################################################################
### 5) Link the librairies
######################################################################################
TARGET_LINK_LIBRARIES(pso ${XML2_LIBS} peo rmc_mpi eo eoutils peo)
TARGET_LINK_LIBRARIES(ea ${XML2_LIBS} peo rmc_mpi eo eoutils peo)
######################################################################################

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/*
* <mainEA.cpp>
* Copyright (C) DOLPHIN Project-Team, INRIA Futurs, 2006-2008
* (C) OPAC Team, INRIA, 2008
*
* Clive Canape
*
* This software is governed by the CeCILL license under French law and
* abiding by the rules of distribution of free software. You can use,
* modify and/ or redistribute the software under the terms of the CeCILL
* license as circulated by CEA, CNRS and INRIA at the following URL
* "http://www.cecill.info".
*
* As a counterpart to the access to the source code and rights to copy,
* modify and redistribute granted by the license, users are provided only
* with a limited warranty and the software's author, the holder of the
* economic rights, and the successive licensors have only limited liability.
*
* In this respect, the user's attention is drawn to the risks associated
* with loading, using, modifying and/or developing or reproducing the
* software by the user in light of its specific status of free software,
* that may mean that it is complicated to manipulate, and that also
* therefore means that it is reserved for developers and experienced
* professionals having in-depth computer knowledge. Users are therefore
* encouraged to load and test the software's suitability as regards their
* requirements in conditions enabling the security of their systems and/or
* data to be ensured and, more generally, to use and operate it in the
* same conditions as regards security.
* The fact that you are presently reading this means that you have had
* knowledge of the CeCILL license and that you accept its terms.
*
* ParadisEO WebSite : http://paradiseo.gforge.inria.fr
* Contact: paradiseo-help@lists.gforge.inria.fr
*
*/
#include <peo>
#include <es.h>
typedef eoReal<double> Indi;
//Evaluation function
double f (const Indi & _indi)
{
// Rosenbrock function f(x) = 100*(x[1]-x[0]^2)^2+(1-x[0])^2
// => optimal : f* = 0 , with x* =(1,1)
double sum;
sum=_indi[1]-pow(_indi[0],2);
sum=100*pow(sum,2);
sum+=pow((1-_indi[0]),2);
return (-sum);
}
int main (int __argc, char *__argv[])
{
// Initialization of the parallel environment : thanks this instruction, ParadisEO-PEO can initialize himself
peo :: init( __argc, __argv );
//Parameters
eoParser parser(__argc, __argv);
unsigned int POP_SIZE = parser.createParam((unsigned int)(20), "popSize", "Population size",'P',"Param").value();
unsigned int MAX_GEN = parser.createParam((unsigned int)(100), "maxGen", "Maximum number of generations",'G',"Param").value();
double EPSILON = parser.createParam(0.01, "mutEpsilon", "epsilon for mutation",'e',"Param").value();
double CROSS_RATE = parser.createParam(0.25, "pCross", "Crossover probability",'C',"Param").value();
double MUT_RATE = parser.createParam(0.35, "pMut", "Mutation probability",'M',"Param").value();
unsigned int VEC_SIZE = parser.createParam((unsigned int)(2), "vecSize", "Vector size",'V',"Param").value();
double INIT_POSITION_MIN = parser.createParam(-2.0, "pMin", "Init position min",'N',"Param").value();
double INIT_POSITION_MAX = parser.createParam(2.0, "pMax", "Init position max",'X',"Param").value();
rng.reseed (time(0));
// Stopping
eoGenContinue < Indi > genContPara (MAX_GEN);
eoCombinedContinue <Indi> continuatorPara (genContPara);
eoCheckPoint<Indi> checkpoint(continuatorPara);
// For a parallel evaluation
peoEvalFunc<Indi> plainEval(f);
peoPopEval <Indi> eval(plainEval);
// Initialization
eoUniformGenerator < double >uGen (INIT_POSITION_MIN, INIT_POSITION_MAX);
eoInitFixedLength < Indi > random (VEC_SIZE, uGen);
// Selection
eoRankingSelect<Indi> selectionStrategy;
eoSelectNumber<Indi> select(selectionStrategy,POP_SIZE);
// Transformation
eoSegmentCrossover<Indi> crossover;
eoUniformMutation<Indi> mutation(EPSILON);
eoSGATransform<Indi> transform(crossover,CROSS_RATE,mutation,MUT_RATE);
// Replacement
eoPlusReplacement<Indi> replace;
// Creation of the population
eoPop < Indi > pop;
pop.append (POP_SIZE, random);
// Algorithm
eoEasyEA< Indi > eaAlg( checkpoint, eval, select, transform, replace );
//Parallel algorithm
peoWrapper parallelEA( eaAlg, pop);
eval.setOwner(parallelEA);
peo :: run();
peo :: finalize();
if (getNodeRank()==1)
{
pop.sort();
std::cout << "Final population :\n" << pop << std::endl;
}
}

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/*
* <mainPSO.cpp>
* Copyright (C) DOLPHIN Project-Team, INRIA Futurs, 2006-2008
* (C) OPAC Team, INRIA, 2008
*
* Clive Canape
*
* This software is governed by the CeCILL license under French law and
* abiding by the rules of distribution of free software. You can use,
* modify and/ or redistribute the software under the terms of the CeCILL
* license as circulated by CEA, CNRS and INRIA at the following URL
* "http://www.cecill.info".
*
* As a counterpart to the access to the source code and rights to copy,
* modify and redistribute granted by the license, users are provided only
* with a limited warranty and the software's author, the holder of the
* economic rights, and the successive licensors have only limited liability.
*
* In this respect, the user's attention is drawn to the risks associated
* with loading, using, modifying and/or developing or reproducing the
* software by the user in light of its specific status of free software,
* that may mean that it is complicated to manipulate, and that also
* therefore means that it is reserved for developers and experienced
* professionals having in-depth computer knowledge. Users are therefore
* encouraged to load and test the software's suitability as regards their
* requirements in conditions enabling the security of their systems and/or
* data to be ensured and, more generally, to use and operate it in the
* same conditions as regards security.
* The fact that you are presently reading this means that you have had
* knowledge of the CeCILL license and that you accept its terms.
*
* ParadisEO WebSite : http://paradiseo.gforge.inria.fr
* Contact: paradiseo-help@lists.gforge.inria.fr
*
*/
#include <peo>
typedef eoRealParticle < double >Indi;
//Evaluation function
double f (const Indi & _indi)
{
// Rosenbrock function f(x) = 100*(x[1]-x[0]^2)^2+(1-x[0])^2
// => optimal : f* = 0 , with x* =(1,1)
double sum;
sum=_indi[1]-pow(_indi[0],2);
sum=100*pow(sum,2);
sum+=pow((1-_indi[0]),2);
return (-sum);
}
int main (int __argc, char *__argv[])
{
// Initialization of the parallel environment : thanks this instruction, ParadisEO-PEO can initialize himself
peo :: init( __argc, __argv );
//Parameters
eoParser parser(__argc, __argv);
unsigned int POP_SIZE = parser.createParam((unsigned int)(20), "popSize", "Population size",'P',"Param").value();
unsigned int MAX_GEN = parser.createParam((unsigned int)(100), "maxGen", "Maximum number of generations",'G',"Param").value();
unsigned int VEC_SIZE = parser.createParam((unsigned int)(2), "vecSize", "Vector size",'V',"Param").value();
double INIT_POSITION_MIN = parser.createParam(-2.0, "pMin", "Init position min",'N',"Param").value();
double INIT_POSITION_MAX = parser.createParam(2.0, "pMax", "Init position max",'X',"Param").value();
double INIT_VELOCITY_MIN = parser.createParam(-1.0, "vMin", "Init velocity min",'n',"Param").value();
double INIT_VELOCITY_MAX = parser.createParam(1.0, "vMax", "Init velocity max",'x',"Param").value();
double weight = parser.createParam(1.0, "weight", "Weight",'w',"Param").value();
double C1 = parser.createParam(0.5, "c1", "C1",'1',"Param").value();
double C2 = parser.createParam(2.0, "c2t", "C2",'2',"Param").value();
unsigned int NEIGHBORHOOD_SIZE = parser.createParam((unsigned int)(6), "neighSize", "Neighborhood size",'H',"Param").value();
rng.reseed (time(0));
// Stopping
eoGenContinue < Indi > genContPara (MAX_GEN);
eoCombinedContinue <Indi> continuatorPara (genContPara);
eoCheckPoint<Indi> checkpoint(continuatorPara);
// For a parallel evaluation
peoEvalFunc<Indi, double, const Indi& > plainEval(f);
peoPopEval< Indi > eval(plainEval);
// Initialization
eoUniformGenerator < double >uGen (INIT_POSITION_MIN, INIT_POSITION_MAX);
eoInitFixedLength < Indi > random (VEC_SIZE, uGen);
// Velocity
eoUniformGenerator < double >sGen (INIT_VELOCITY_MIN, INIT_VELOCITY_MAX);
eoVelocityInitFixedLength < Indi > veloRandom (VEC_SIZE, sGen);
// Initializing the best
eoFirstIsBestInit < Indi > localInit;
// Flight
eoRealVectorBounds bndsFlight(VEC_SIZE,INIT_POSITION_MIN,INIT_POSITION_MAX);
eoStandardFlight < Indi > flight(bndsFlight);
// Creation of the population
eoPop < Indi > pop;
pop.append (POP_SIZE, random);
// Topology
eoLinearTopology<Indi> topology(NEIGHBORHOOD_SIZE);
eoRealVectorBounds bnds(VEC_SIZE,INIT_VELOCITY_MIN,INIT_VELOCITY_MAX);
eoStandardVelocity < Indi > velocity (topology,weight,C1,C2,bnds);
// Initialization
eoInitializer <Indi> init(eval,veloRandom,localInit,topology,pop);
//Parallel algorithm
eoSyncEasyPSO <Indi> psa(init,checkpoint,eval, velocity, flight);
peoWrapper parallelPSO( psa, pop);
eval.setOwner(parallelPSO);
peo :: run();
peo :: finalize();
if (getNodeRank()==1)
{
pop.sort();
std::cout << "Final population :\n" << pop << std::endl;
}
}

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# Doxyfile 1.4.7
#---------------------------------------------------------------------------
# Project related configuration options
#---------------------------------------------------------------------------
PROJECT_NAME = "ParadisEO-PEO Lesson1"
PROJECT_NUMBER = 0.1
OUTPUT_DIRECTORY = ../../../doc/html/lesson1
CREATE_SUBDIRS = NO
OUTPUT_LANGUAGE = English
USE_WINDOWS_ENCODING = NO
BRIEF_MEMBER_DESC = YES
REPEAT_BRIEF = YES
ABBREVIATE_BRIEF = "The $name class" \
"The $name widget" \
"The $name file" \
is \
provides \
specifies \
contains \
represents \
a \
an \
the
ALWAYS_DETAILED_SEC = NO
INLINE_INHERITED_MEMB = NO
FULL_PATH_NAMES = NO
STRIP_FROM_PATH =
STRIP_FROM_INC_PATH =
SHORT_NAMES = NO
JAVADOC_AUTOBRIEF = YES
MULTILINE_CPP_IS_BRIEF = NO
DETAILS_AT_TOP = NO
INHERIT_DOCS = YES
SEPARATE_MEMBER_PAGES = NO
TAB_SIZE = 8
ALIASES =
OPTIMIZE_OUTPUT_FOR_C = NO
OPTIMIZE_OUTPUT_JAVA = NO
BUILTIN_STL_SUPPORT = NO
DISTRIBUTE_GROUP_DOC = NO
SUBGROUPING = YES
#---------------------------------------------------------------------------
# Build related configuration options
#---------------------------------------------------------------------------
EXTRACT_ALL = NO
EXTRACT_PRIVATE = YES
EXTRACT_STATIC = YES
EXTRACT_LOCAL_CLASSES = YES
EXTRACT_LOCAL_METHODS = NO
HIDE_UNDOC_MEMBERS = YES
HIDE_UNDOC_CLASSES = YES
HIDE_FRIEND_COMPOUNDS = NO
HIDE_IN_BODY_DOCS = NO
INTERNAL_DOCS = NO
CASE_SENSE_NAMES = YES
HIDE_SCOPE_NAMES = NO
SHOW_INCLUDE_FILES = YES
INLINE_INFO = YES
SORT_MEMBER_DOCS = NO
SORT_BRIEF_DOCS = NO
SORT_BY_SCOPE_NAME = NO
GENERATE_TODOLIST = YES
GENERATE_TESTLIST = YES
GENERATE_BUGLIST = YES
GENERATE_DEPRECATEDLIST= YES
ENABLED_SECTIONS =
MAX_INITIALIZER_LINES = 30
SHOW_USED_FILES = YES
SHOW_DIRECTORIES = NO
FILE_VERSION_FILTER =
#---------------------------------------------------------------------------
# configuration options related to warning and progress messages
#---------------------------------------------------------------------------
QUIET = YES
WARNINGS = YES
WARN_IF_UNDOCUMENTED = YES
WARN_IF_DOC_ERROR = YES
WARN_NO_PARAMDOC = NO
WARN_FORMAT = "$file:$line: $text"
WARN_LOGFILE =
#---------------------------------------------------------------------------
# configuration options related to the input files
#---------------------------------------------------------------------------
INPUT = .
FILE_PATTERNS = *.cpp \
*.h \
NEWS \
README
RECURSIVE = YES
EXCLUDE =
EXCLUDE_SYMLINKS = NO
EXCLUDE_PATTERNS =
EXAMPLE_PATH =
EXAMPLE_PATTERNS = *
EXAMPLE_RECURSIVE = NO
IMAGE_PATH = ../../docs/images
INPUT_FILTER =
FILTER_PATTERNS =
FILTER_SOURCE_FILES = NO
#---------------------------------------------------------------------------
# configuration options related to source browsing
#---------------------------------------------------------------------------
SOURCE_BROWSER = YES
INLINE_SOURCES = NO
STRIP_CODE_COMMENTS = YES
REFERENCED_BY_RELATION = YES
REFERENCES_RELATION = YES
REFERENCES_LINK_SOURCE = YES
USE_HTAGS = NO
VERBATIM_HEADERS = YES
#---------------------------------------------------------------------------
# configuration options related to the alphabetical class index
#---------------------------------------------------------------------------
ALPHABETICAL_INDEX = YES
COLS_IN_ALPHA_INDEX = 3
IGNORE_PREFIX = peo
#---------------------------------------------------------------------------
# configuration options related to the HTML output
#---------------------------------------------------------------------------
GENERATE_HTML = YES
HTML_OUTPUT = html
HTML_FILE_EXTENSION = .html
HTML_HEADER =
HTML_FOOTER =
HTML_STYLESHEET =
HTML_ALIGN_MEMBERS = YES
GENERATE_HTMLHELP = NO
CHM_FILE =
HHC_LOCATION =
GENERATE_CHI = NO
BINARY_TOC = NO
TOC_EXPAND = NO
DISABLE_INDEX = NO
ENUM_VALUES_PER_LINE = 4
GENERATE_TREEVIEW = YES
TREEVIEW_WIDTH = 250
#---------------------------------------------------------------------------
# configuration options related to the LaTeX output
#---------------------------------------------------------------------------
GENERATE_LATEX = YES
LATEX_OUTPUT = latex
LATEX_CMD_NAME = latex
MAKEINDEX_CMD_NAME = makeindex
COMPACT_LATEX = NO
PAPER_TYPE = a4wide
EXTRA_PACKAGES =
LATEX_HEADER =
PDF_HYPERLINKS = YES
USE_PDFLATEX = YES
LATEX_BATCHMODE = NO
LATEX_HIDE_INDICES = NO
#---------------------------------------------------------------------------
# configuration options related to the RTF output
#---------------------------------------------------------------------------
GENERATE_RTF = NO
RTF_OUTPUT = rtf
COMPACT_RTF = NO
RTF_HYPERLINKS = NO
RTF_STYLESHEET_FILE =
RTF_EXTENSIONS_FILE =
#---------------------------------------------------------------------------
# configuration options related to the man page output
#---------------------------------------------------------------------------
GENERATE_MAN = YES
MAN_OUTPUT = man
MAN_EXTENSION = .3
MAN_LINKS = NO
#---------------------------------------------------------------------------
# configuration options related to the XML output
#---------------------------------------------------------------------------
GENERATE_XML = NO
XML_OUTPUT = xml
XML_SCHEMA =
XML_DTD =
XML_PROGRAMLISTING = YES
#---------------------------------------------------------------------------
# configuration options for the AutoGen Definitions output
#---------------------------------------------------------------------------
GENERATE_AUTOGEN_DEF = NO
#---------------------------------------------------------------------------
# configuration options related to the Perl module output
#---------------------------------------------------------------------------
GENERATE_PERLMOD = NO
PERLMOD_LATEX = NO
PERLMOD_PRETTY = YES
PERLMOD_MAKEVAR_PREFIX =
#---------------------------------------------------------------------------
# Configuration options related to the preprocessor
#---------------------------------------------------------------------------
ENABLE_PREPROCESSING = YES
MACRO_EXPANSION = NO
EXPAND_ONLY_PREDEF = NO
SEARCH_INCLUDES = YES
INCLUDE_PATH =
INCLUDE_FILE_PATTERNS =
PREDEFINED =
EXPAND_AS_DEFINED =
SKIP_FUNCTION_MACROS = YES
#---------------------------------------------------------------------------
# Configuration::additions related to external references
#---------------------------------------------------------------------------
TAGFILES = ../../../paradiseo-mo/docs/eo.doxytag=../../../../../paradiseo-mo/docs/html \
../../../paradiseo-mo/docs/mo.doxytag=../../../../../paradiseo-mo/docs/html \
../../docs/paradiseo-peo.doxytag=../../ \
../shared/paradiseo-peo-lsn-shared.doxytag=../../lsnshared/html
GENERATE_TAGFILE = ../../docs/paradiseo-peo-lsn.doxytag
ALLEXTERNALS = NO
EXTERNAL_GROUPS = YES
PERL_PATH = /usr/bin/perl
#---------------------------------------------------------------------------
# Configuration options related to the dot tool
#---------------------------------------------------------------------------
CLASS_DIAGRAMS = YES
HIDE_UNDOC_RELATIONS = YES
HAVE_DOT = NO
CLASS_GRAPH = YES
COLLABORATION_GRAPH = YES
GROUP_GRAPHS = YES
UML_LOOK = NO
TEMPLATE_RELATIONS = NO
INCLUDE_GRAPH = YES
INCLUDED_BY_GRAPH = YES
CALL_GRAPH = NO
CALLER_GRAPH = NO
GRAPHICAL_HIERARCHY = YES
DIRECTORY_GRAPH = YES
DOT_IMAGE_FORMAT = png
DOT_PATH =
DOTFILE_DIRS =
MAX_DOT_GRAPH_WIDTH = 1024
MAX_DOT_GRAPH_HEIGHT = 1024
MAX_DOT_GRAPH_DEPTH = 0
DOT_TRANSPARENT = NO
DOT_MULTI_TARGETS = NO
GENERATE_LEGEND = YES
DOT_CLEANUP = YES
#---------------------------------------------------------------------------
# Configuration::additions related to the search engine
#---------------------------------------------------------------------------
SEARCHENGINE = YES

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###### Param ######
--popSize=20 # -P : Population size
--maxGen=200 # -G : Maximum number of generations
--mutEpsilon=0.01 # -e : epsilon for mutation
--pCross=0.80 # -C : Crossover probability
--pMut=0.30 # -M : Mutation probability
--vecSize=2 # -V : Vector size
--pMin=-2.0 # -N : Init position min
--pMax=2.0 # -X : Init position max
--vMin=-1.0 # -n : Init velocity min
--vMax=1.0 # -x : Init velocity max
--neighSize=6 # -H : Neighborhood size
--weight=1.0 # -w : Weight
--c1=0.5 # -1 : C1
--c2=2.0 # -2 : C2
## miscallenous parameters
--debug=false
## deployment schema
--schema=schema.xml

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<?xml version="1.0"?>
<schema>
<group scheduler="0">
<node name="0" num_workers="0">
</node>
<node name="1" num_workers="0">
<runner>1</runner>
</node>
<node name="2" num_workers="1">
</node>
<node name="3" num_workers="1">
</node>
</group>
</schema>