manual merge in favor of the CMakeLists of the fusion branch

This commit is contained in:
Johann Dreo 2012-12-18 11:39:06 +01:00
commit 291bb7ce14
967 changed files with 137738 additions and 846 deletions

24
.gitignore vendored Normal file
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@ -0,0 +1,24 @@
# ignore html files
*.html
# ignore all textual files
*.txt
# ignore object and archive files
*.[oa]
# ignore auto-saved files
*~
\#*\#
# excepted these manually configured files
!CMakeLists.txt
!README.txt
!application/
!build/
!doc/
!lib/
!src/
!test/
!eompi.html
build/

48
AUTHORS
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@ -1,11 +1,41 @@
Main developers: Current maintainers
===================
Arnaud Liefooghe <arnaud.liefooghe@univ-lille1.fr>
Clive Canape <clive.canape@inria.fr>
Johann Dreo <johann@dreo.fr>
Sébastien Verel <sebastien.verel@inria.fr>
Sébastien Cahon Active developpers
==================
Alexandre Quemy <alexandre.quemy@inria.fr>
Benjamin Bouvier <bnjbouv@gmail.com>
Caner Candan <caner@candan.fr>
Pierre Savéant <pierre.saveant@thalesgroup.com>
Past contributors
=================
atantar
fatene
Gustavo Romero Lopez
jboisson
Jeroen Eggermont
Jochen Küpper
Joost <joost@dsj.nl>
Juan Julian Merelo Guervos
Jérémie Humeau Jérémie Humeau
Arnaud Liefooghe Karima Boufaras
Sebastien Verel legillon
Nourdine Melab Louis Da Costa
Loïc Jean David Arjanen
Team leader: Maarten Keijzer
Marc Schoenauer
El-Ghazali Talbi Marie-Éleonore
Mostepha Khouadjia
Olivier König
Pedro Angel Castillo Valdivieso
Steve Madere
Sébastien Cahon
Thomas Legrand
Victor Manuel Rivas Santos
wcancino
xohm

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@ -22,9 +22,13 @@ if("${CMAKE_CXX_COMPILER}" STREQUAL "" OR "${CMAKE_C_COMPILER}" STREQUAL "")
endif() endif()
## Versioning ## Versioning
set(VERSION_MAJOR 2) set(VERSION_MAJOR 2 CACHE STRING "Major version number" )
set(VERSION_MINOR 0) set(VERSION_MINOR 1 CACHE STRING "Minor version number" )
set(VERSION_PATCH 1) set(VERSION_PATCH 0 CACHE STRING "Patch version number" )
SET(PROJECT_VERSION "${PROJECT_VERSION_MAJOR}.${PROJECT_VERSION_MINOR}.${PROJECT_VERSION_PATCH}" CACHE INTERNAL "Package version" FORCE)
SET(VERSION "${PROJECT_VERSION_MAJOR}.${PROJECT_VERSION_MINOR}${PROJECT_VERSION_MISC}" CACHE INTERNAL "Global version" FORCE)
SET(GLOBAL_VERSION "${VERSION}")
###################################################################################### ######################################################################################
### 2) Check dependencies ### 2) Check dependencies
@ -51,25 +55,36 @@ include(${CMAKE_CURRENT_SOURCE_DIR}/cmake/Target.cmake)
###################################################################################### ######################################################################################
## Paths ## Paths
set(EO_SRC_DIR "${CMAKE_SOURCE_DIR}/eo" CACHE PATH "ParadisEO-EO source directory" FORCE) set( EO_SRC_DIR "${CMAKE_SOURCE_DIR}/eo" CACHE INTERNAL "ParadisEO-EO source directory" FORCE)
set(EO_BIN_DIR "${CMAKE_BINARY_DIR}/eo" CACHE PATH "ParadisEO-EO binary directory" FORCE) set( EO_BIN_DIR "${CMAKE_BINARY_DIR}/eo" CACHE INTERNAL "ParadisEO-EO binary directory" FORCE)
set(MO_SRC_DIR "${CMAKE_SOURCE_DIR}/mo" CACHE PATH "ParadisEO-MO source directory" FORCE)
set(MO_BIN_DIR "${CMAKE_BINARY_DIR}/mo" CACHE PATH "ParadisEO-MO binary directory" FORCE)
set(MOEO_SRC_DIR "${CMAKE_SOURCE_DIR}/moeo" CACHE PATH "ParadisEO-MOEO source directory" FORCE) set( EDO_SRC_DIR "${CMAKE_SOURCE_DIR}/edo" CACHE INTERNAL "ParadisEO-EDO source directory" FORCE)
set(MOEO_BIN_DIR "${CMAKE_BINARY_DIR}/moeo" CACHE PATH "ParadisEO-MOEO binary directory" FORCE) set( EDO_BIN_DIR "${CMAKE_BINARY_DIR}/edo" CACHE INTERNAL "ParadisEO-EDO binary directory" FORCE)
set(SMP_SRC_DIR "${CMAKE_SOURCE_DIR}/smp" CACHE PATH "ParadisEO-SMP source directory" FORCE) set( MO_SRC_DIR "${CMAKE_SOURCE_DIR}/mo" CACHE INTERNAL "ParadisEO-MO source directory" FORCE)
set(SMP_BIN_DIR "${CMAKE_BINARY_DIR}/smp" CACHE PATH "ParadisEO-SMP binary directory" FORCE) set( MO_BIN_DIR "${CMAKE_BINARY_DIR}/mo" CACHE INTERNAL "ParadisEO-MO binary directory" FORCE)
set(PEO_SRC_DIR "${CMAKE_SOURCE_DIR}/peo" CACHE PATH "ParadisEO-PEO source directory" FORCE) set(MOEO_SRC_DIR "${CMAKE_SOURCE_DIR}/moeo" CACHE INTERNAL "ParadisEO-MOEO source directory" FORCE)
set(PEO_BIN_DIR "${CMAKE_BINARY_DIR}/peo" CACHE PATH "ParadisEO-PEO binary directory" FORCE) set(MOEO_BIN_DIR "${CMAKE_BINARY_DIR}/moeo" CACHE INTERNAL "ParadisEO-MOEO binary directory" FORCE)
set(PROBLEMS_SRC_DIR "${CMAKE_SOURCE_DIR}/problems" CACHE PATH "Problems dependant source directory" FORCE) set( SMP_SRC_DIR "${CMAKE_SOURCE_DIR}/smp" CACHE INTERNAL "ParadisEO-SMP source directory" FORCE)
set( SMP_BIN_DIR "${CMAKE_BINARY_DIR}/smp" CACHE INTERNAL "ParadisEO-SMP binary directory" FORCE)
#set( PEO_SRC_DIR "${CMAKE_SOURCE_DIR}/peo" CACHE INTERNAL "ParadisEO-PEO source directory" FORCE)
#set( PEO_BIN_DIR "${CMAKE_BINARY_DIR}/peo" CACHE INTERNAL "ParadisEO-PEO binary directory" FORCE)
set(PROBLEMS_SRC_DIR "${CMAKE_SOURCE_DIR}/problems" CACHE INTERNAL "Problems dependant source directory" FORCE)
set(CMAKE_BASE_SOURCE_DIR ${CMAKE_SOURCE_DIR}) set(CMAKE_BASE_SOURCE_DIR ${CMAKE_SOURCE_DIR})
set(EO_ONLY "false" CACHE BOOL "Only build EO and not the other modules")
set(ENABLE_OPENMP "false" CACHE BOOL "Build EO with the OpenMP support (shared-memory parallel evaluators on multi-core)")
set(ENABLE_GNUPLOT "false" CACHE BOOL "Build EO with the GNUplot support (real-time convergence plotting)")
set(EDO "true" CACHE BOOL "Build the EDO module")
set(EDO_USE_LIB "Eigen3" CACHE STRING "Which linear algebra library to use to build EDO ('UBlas' or 'Eigen3', Eigen3 is recommended)")
set(SMP "false" CACHE BOOL "Build the SMP module")
#set(PEO "true" CACHE BOOL "Build the PEO module")
## EO Module ## EO Module
set(EO_MODULE_NAME "Evolving Object") set(EO_MODULE_NAME "Evolving Object")
set(CMAKE_SOURCE_DIR ${EO_SRC_DIR}) set(CMAKE_SOURCE_DIR ${EO_SRC_DIR})
@ -77,28 +92,35 @@ add_subdirectory(${CMAKE_SOURCE_DIR})
if(NOT EO_ONLY) if(NOT EO_ONLY)
## MO Module ## MO Module
set(MO_MODULE_NAME "ParadisEO-MO") set(MO_MODULE_NAME "Moving objects")
set(CMAKE_SOURCE_DIR ${MO_SRC_DIR}) set(CMAKE_SOURCE_DIR ${MO_SRC_DIR})
add_subdirectory(${MO_SRC_DIR}) add_subdirectory(${MO_SRC_DIR})
## EDO Module
if(EDO)
set(EDO_MODULE_NAME "Evolving Distribution Objects")
set(CMAKE_SOURCE_DIR ${EDO_SRC_DIR})
add_subdirectory(${EDO_SRC_DIR})
endif()
## MOEO Module ## MOEO Module
set(MOEO_MODULE_NAME "ParadisEO-MOEO") set(MOEO_MODULE_NAME "Multi-Objectives EO")
set(CMAKE_SOURCE_DIR ${MOEO_SRC_DIR}) set(CMAKE_SOURCE_DIR ${MOEO_SRC_DIR})
add_subdirectory(${MOEO_SRC_DIR}) add_subdirectory(${MOEO_SRC_DIR})
## SMP Module ## SMP Module
if(SMP) if(SMP)
set(SMP_MODULE_NAME "ParadisEO-SMP") set(SMP_MODULE_NAME "Symmetric Multi-Processing")
set(CMAKE_SOURCE_DIR ${SMP_SRC_DIR}) set(CMAKE_SOURCE_DIR ${SMP_SRC_DIR})
add_subdirectory(${SMP_SRC_DIR}) add_subdirectory(${SMP_SRC_DIR})
endif() endif()
## PEO Module ## PEO Module
if(PEO) # if(PEO)
set(PEO_MODULE_NAME "ParadisEO-PEO") # set(PEO_MODULE_NAME "Parallel-EO")
set(CMAKE_SOURCE_DIR ${PEO_SRC_DIR}) # set(CMAKE_SOURCE_DIR ${PEO_SRC_DIR})
add_subdirectory(${PEO_SRC_DIR}) # add_subdirectory(${PEO_SRC_DIR})
endif() #endif()
endif() endif()
###################################################################################### ######################################################################################

45
ForRelease Normal file
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@ -0,0 +1,45 @@
In order to create a new release from the current repository, perform the
following steps:
- If necessary, create a branch named "eo_x.y.z"
- Set version number in eo-conf.cmake
- Check/update NEWS file, set release date and version in NEWS.
- use the "archive_current.sh" script to create the source archive
- Put source archive and packages files at SourceForge
- Update the documentation on the website
- Post news on SourceForge project-page
- Send announcement to mailing lists
- Bump version number to next "x.y.z-edge" in eo-conf.cmake
When reaching stable versions:
- prepare a message with the following template:
-----8<-----
A new version of the "Evolving Objects" framework is available.
EO is a template-based, C++ evolutionary computation library which
helps you to write your own stochastic optimization algorithms
insanely fast.
Learn more about EO on the official website:
http://eodev.sourceforge.net/
You will find the release x.y.z at the following address:
https://sourceforge.net/projects/eodev/files/eo/
Here is a summary of the change log:
- XXXXX
- and more…
Do not hesitate to submit the bugs you will face:
https://sourceforge.net/apps/trac/eodev/wiki/WikiStart
Happy evolutionary hacking.
-----8<-----
- Post the message to:
- EO news https://sourceforge.net/news/?group_id=9775
- EO mailing list: eodev-main@lists.sourceforge.net
- ParadisEO mailing list: paradiseo-users@lists.gforge.inria.fr
- EC-digest maling list: ec-digest-l@listserv.gmu.edu
- JET mailing list: jet@inria.fr

12
INSTALL
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@ -135,6 +135,17 @@ To enable the compilation of the PEO module, just add -DPEO=true to CMake :
> cmake .. -DPEO=true > cmake .. -DPEO=true
------------------------------------------------------------------------------------------
2.3 EDO MODULE
------------------------------------------------------------------------------------------
WARNING : The EDO module requires either the Boost::ublas or the Eigen3 library.
To enable the compilation of the EDO module, just add -DEDO=true to CMake :
> cmake .. -DEDO=true
------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------
3. DOCUMENTATION 3. DOCUMENTATION
------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------
@ -145,6 +156,7 @@ Targets are :
doc for all documentations doc for all documentations
doc-eo for building EO documentation doc-eo for building EO documentation
doc-mo for MO doc-mo for MO
doc-edo for MO
doc-moeo for MOEO doc-moeo for MOEO
doc-smp for SMP doc-smp for SMP

3
archive_current.sh Executable file
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@ -0,0 +1,3 @@
today=`date --iso-8601`
git archive --format zip master > EO-${today}.zip

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@ -51,13 +51,14 @@ endif(SMP)
###################################################################################### ######################################################################################
if(INSTALL_TYPE STREQUAL full) if(INSTALL_TYPE STREQUAL full)
set(ENABLE_CMAKE_EXAMPLE "true" CACHE PATH "ParadisEO examples") set(ENABLE_CMAKE_EXAMPLE "true" CACHE BOOL "ParadisEO examples")
set(ENABLE_CMAKE_TESTING "true" CACHE PATH "ParadisEO tests") set(ENABLE_CMAKE_TESTING "true" CACHE BOOL "ParadisEO tests")
elseif(INSTALL_TYPE STREQUAL min OR NOT DEFINED INSTALL_TYPE) elseif(INSTALL_TYPE STREQUAL min OR NOT DEFINED INSTALL_TYPE)
set(ENABLE_CMAKE_EXAMPLE "false" CACHE PATH "ParadisEO examples") set(ENABLE_CMAKE_EXAMPLE "false" CACHE BOOL "ParadisEO examples")
set(ENABLE_CMAKE_TESTING "false" CACHE PATH "ParadisEO tests") set(ENABLE_CMAKE_TESTING "false" CACHE BOOL "ParadisEO tests")
endif() endif()
###################################################################################### ######################################################################################
### 2) Define profiling flags ### 2) Define profiling flags
###################################################################################### ######################################################################################
@ -65,7 +66,7 @@ endif()
if(PROFILING) if(PROFILING)
set(CMAKE_CXX_FLAGS_DEBUG "${CMAKE_CXX_FLAGS_DEBUG} -pg --coverage" CACHE STRING "" FORCE) set(CMAKE_CXX_FLAGS_DEBUG "${CMAKE_CXX_FLAGS_DEBUG} -pg --coverage" CACHE STRING "" FORCE)
set(CMAKE_BUILD_TYPE "Debug" CACHE STRING "" FORCE) set(CMAKE_BUILD_TYPE "Debug" CACHE STRING "" FORCE)
set(ENABLE_CMAKE_TESTING "true" CACHE STRING "" FORCE) set(ENABLE_CMAKE_TESTING "true" CACHE BOOL "" FORCE)
endif(PROFILING) endif(PROFILING)
###################################################################################### ######################################################################################
@ -81,7 +82,7 @@ endif(ENABLE_CMAKE_TESTING)
### 5) Build examples ? ### 5) Build examples ?
###################################################################################### ######################################################################################
set(ENABLE_CMAKE_EXAMPLE "true" CACHE PATH "ParadisEO examples") set(ENABLE_CMAKE_EXAMPLE "true" CACHE BOOL "ParadisEO examples")
###################################################################################### ######################################################################################
### 6) Determine prefix for installation ### 6) Determine prefix for installation

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@ -52,7 +52,7 @@ set(CPACK_RESOURCE_FILE_README "${CMAKE_CURRENT_SOURCE_DIR}/README")
set(CPACK_PACKAGE_DESCRIPTION "ParadisEO is a white-box object-oriented framework dedicated to the flexible design of metaheuristics. This template-based, ANSI-C++ compliant computation library is portable across both Windows system and sequential platforms (Unix, Linux, Mac OS X, etc.). ParadisEO is distributed under the CeCill license and can be used under several environments.") set(CPACK_PACKAGE_DESCRIPTION "ParadisEO is a white-box object-oriented framework dedicated to the flexible design of metaheuristics. This template-based, ANSI-C++ compliant computation library is portable across both Windows system and sequential platforms (Unix, Linux, Mac OS X, etc.). ParadisEO is distributed under the CeCill license and can be used under several environments.")
set(CPACK_RESOURCE_FILE_LICENSE "${CMAKE_CURRENT_SOURCE_DIR}/LICENSE") set(CPACK_RESOURCE_FILE_LICENSE "${CMAKE_CURRENT_SOURCE_DIR}/LICENSE")
set(CPACK_PACKAGE_DESCRIPTION_SUMMARY "A Software Framework for Metaheuristics") set(CPACK_PACKAGE_DESCRIPTION_SUMMARY "A Software Framework for Metaheuristics")
set(CPACK_PACKAGE_VENDOR "Inria") set(CPACK_PACKAGE_VENDOR "Inria/Thales")
set(CPACK_PACKAGE_CONTACT "paradiseo-help@lists.gforge.inria.fr") set(CPACK_PACKAGE_CONTACT "paradiseo-help@lists.gforge.inria.fr")
set(CPACK_PACKAGE_VERSION ${VERSION_MAJOR}.${VERSION_MINOR}.${VERSION_PATCH}) set(CPACK_PACKAGE_VERSION ${VERSION_MAJOR}.${VERSION_MINOR}.${VERSION_PATCH})
set(CPACK_STRIP_FILES ${PACKAGE_NAME}) set(CPACK_STRIP_FILES ${PACKAGE_NAME})

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@ -1,9 +1,9 @@
###################################################################################### ######################################################################################
### Mrproper will delete all files and folders in build directory ### cleanall will delete all files and folders in build directory
###################################################################################### ######################################################################################
if(UNIX) if(UNIX)
add_custom_target(mrproper COMMAND cd ${CMAKE_BINARY_DIR} && rm -rf *) add_custom_target(cleanall COMMAND cd ${CMAKE_BINARY_DIR} && rm -rf *)
endif(UNIX) endif(UNIX)
###################################################################################### ######################################################################################
@ -12,16 +12,18 @@ endif(UNIX)
if(DOXYGEN_FOUND AND DOXYGEN_EXECUTABLE) if(DOXYGEN_FOUND AND DOXYGEN_EXECUTABLE)
if(SMP) if(SMP)
add_custom_target(doc add_custom_target(doc
COMMAND make doc-eo COMMAND make doc-eo
COMMAND make doc-mo COMMAND make doc-edo
COMMAND make doc-mo
COMMAND make doc-moeo COMMAND make doc-moeo
COMMAND make doc-smp COMMAND make doc-smp
) )
else() else()
add_custom_target(doc add_custom_target(doc
COMMAND make doc-eo COMMAND make doc-eo
COMMAND make doc-mo COMMAND make doc-edo
COMMAND make doc-mo
COMMAND make doc-moeo COMMAND make doc-moeo
) )
endif() endif()

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@ -1,9 +1,8 @@
# File: FindParadiseo.cmake
# Version: 0.0.1
# #
# The following variables are filled out: # The following variables are filled out:
# - PARADISEO_INCLUDE_DIR : EO, MO and MOEO source dir # - PARADISEO_INCLUDE_DIR : EO, MO and MOEO source dir
# - EO_INCLUDE_DIR : EO source dir # - EO_INCLUDE_DIR : EO source dir
# - EDO_INCLUDE_DIR : EO source dir
# - MO_INCLUDE_DIR : MO source dir # - MO_INCLUDE_DIR : MO source dir
# - MOEO_INCLUDE_DIR : MOEO source dir. WARNING : You have ton include MO before ! # - MOEO_INCLUDE_DIR : MOEO source dir. WARNING : You have ton include MO before !
# - PARADISEO_LIBRARIES : the list of all required modules # - PARADISEO_LIBRARIES : the list of all required modules
@ -13,6 +12,7 @@
# #
# Here are the components: # Here are the components:
# - eo # - eo
# - edo
# - PyEO # - PyEO
# - es # - es
# - ga # - ga
@ -38,7 +38,7 @@ endif()
# enabled components # enabled components
if ("${Paradiseo_FIND_COMPONENTS}" STREQUAL "") if ("${Paradiseo_FIND_COMPONENTS}" STREQUAL "")
set(PARADISEO_LIBRARIES_TO_FIND eo eoutils cma es flowshop ga moeo) set(PARADISEO_LIBRARIES_TO_FIND eo eoutils edoutils cma es flowshop ga moeo)
else() else()
set(PARADISEO_LIBRARIES_TO_FIND ${Paradiseo_FIND_COMPONENTS}) set(PARADISEO_LIBRARIES_TO_FIND ${Paradiseo_FIND_COMPONENTS})
endif() endif()
@ -63,7 +63,11 @@ set(PARADISEO_SRC_PATHS
find_path(EO_INCLUDE_DIR eo find_path(EO_INCLUDE_DIR eo
PATH_SUFFIXES include${INSTALL_SUB_DIR}/eo eo/src PATH_SUFFIXES include${INSTALL_SUB_DIR}/eo eo/src
PATHS ${PARADISEO_SRC_PATHS}) PATHS ${PARADISEO_SRC_PATHS})
find_path(EDO_INCLUDE_DIR edo
PATH_SUFFIXES include${INSTALL_SUB_DIR}/edo edo/src
PATHS ${PARADISEO_SRC_PATHS})
find_path(MO_INCLUDE_DIR mo find_path(MO_INCLUDE_DIR mo
PATH_SUFFIXES include${INSTALL_SUB_DIR}/mo mo/src PATH_SUFFIXES include${INSTALL_SUB_DIR}/mo mo/src
PATHS ${PARADISEO_SRC_PATHS}) PATHS ${PARADISEO_SRC_PATHS})
@ -71,7 +75,7 @@ find_path(MO_INCLUDE_DIR mo
find_path(MOEO_INCLUDE_DIR moeo find_path(MOEO_INCLUDE_DIR moeo
PATH_SUFFIXES include${INSTALL_SUB_DIR}/moeo moeo/src PATH_SUFFIXES include${INSTALL_SUB_DIR}/moeo moeo/src
PATHS ${PARADISEO_SRC_PATHS}) PATHS ${PARADISEO_SRC_PATHS})
# Specific for SMP and PEO # Specific for SMP and PEO
foreach(COMP ${PARADISEO_LIBRARIES_TO_FIND}) foreach(COMP ${PARADISEO_LIBRARIES_TO_FIND})
if(${COMP} STREQUAL "smp") if(${COMP} STREQUAL "smp")
@ -87,7 +91,7 @@ foreach(COMP ${PARADISEO_LIBRARIES_TO_FIND})
endif() endif()
endforeach() endforeach()
set(PARADISEO_INCLUDE_DIR ${EO_INCLUDE_DIR} ${MO_INCLUDE_DIR} ${MOEO_INCLUDE_DIR}) set(PARADISEO_INCLUDE_DIR ${EO_INCLUDE_DIR} ${EDO_INCLUDE_DIR} ${MO_INCLUDE_DIR} ${MOEO_INCLUDE_DIR})
if(SMP_FOUND) if(SMP_FOUND)
set(PARADISEO_INCLUDE_DIR ${PARADISEO_INCLUDE_DIR} ${SMP_INCLUDE_DIR}) set(PARADISEO_INCLUDE_DIR ${PARADISEO_INCLUDE_DIR} ${SMP_INCLUDE_DIR})
@ -116,6 +120,7 @@ set(FIND_PARADISEO_LIB_PATHS
#Suffixes #Suffixes
set(PARADISEO_LIB_PATHS_SUFFIXES set(PARADISEO_LIB_PATHS_SUFFIXES
eo/lib eo/lib
edo/lib
mo/lib mo/lib
moeo/lib moeo/lib
moeo/tutorial/examples/flowshop/lib #For flowshop library moeo/tutorial/examples/flowshop/lib #For flowshop library
@ -125,7 +130,7 @@ set(PARADISEO_LIB_PATHS_SUFFIXES
lib32 lib32
lib64 lib64
) )
foreach(FIND_PARADISEO_COMPONENT ${PARADISEO_LIBRARIES_TO_FIND}) foreach(FIND_PARADISEO_COMPONENT ${PARADISEO_LIBRARIES_TO_FIND})
string(TOUPPER ${FIND_PARADISEO_COMPONENT} FIND_PARADISEO_COMPONENT_UPPER) string(TOUPPER ${FIND_PARADISEO_COMPONENT} FIND_PARADISEO_COMPONENT_UPPER)
# release library # release library
@ -149,6 +154,7 @@ endforeach()
if(PARADISEO_FOUND) if(PARADISEO_FOUND)
message(STATUS "Found ParadisEO includes :") message(STATUS "Found ParadisEO includes :")
message(${EO_INCLUDE_DIR}) message(${EO_INCLUDE_DIR})
message(${EDO_INCLUDE_DIR})
message(${MO_INCLUDE_DIR}) message(${MO_INCLUDE_DIR})
message(${MOEO_INCLUDE_DIR}) message(${MOEO_INCLUDE_DIR})
if(SMP_FOUND) if(SMP_FOUND)

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deprecated/eo/AUTHORS Normal file
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@ -0,0 +1,12 @@
Pedro Angel Castillo Valdivieso
Juan Julian Merelo Guervos
Victor Manuel Rivas Santos
Gustavo Romero Lopez
Maarten Keijzer
Marc Schoenauer
Jeroen Eggermont
Jochen K<>pper
Thomas Legrand
Clive Canape
Johann Dréo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>

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@ -0,0 +1,44 @@
# the user should choose the build type on windows environments,excepted under cygwin (default=none)
#SET(CMAKE_DEFAULT_BUILD_TYPE "Release" CACHE STRING "Variable that stores the default CMake build type" FORCE)
#SET(CMAKE_BUILD_TYPE Debug) # allows to enable assert calls and -g flag
FIND_PROGRAM(MEMORYCHECK_COMMAND
NAMES purify valgrind
PATHS
"/usr/local/bin /usr/bin [HKEY_LOCAL_MACHINE\\SOFTWARE\\Rational Software\\Purify\\Setup;InstallFolder]"
DOC "Path to the memory checking command, used for memory error detection.")
IF(NOT CMAKE_BUILD_TYPE)
SET( CMAKE_BUILD_TYPE
${CMAKE_DEFAULT_BUILD_TYPE} CACHE STRING
"Choose the type of build, options are: Debug Release RelWithDebInfo MinSizeRel."
FORCE)
ENDIF(NOT CMAKE_BUILD_TYPE)
IF(WIN32 AND NOT CYGWIN)
IF(CMAKE_CXX_COMPILER MATCHES cl)
IF(NOT WITH_SHARED_LIBS)
IF(CMAKE_GENERATOR STREQUAL "Visual Studio 8 2005" OR CMAKE_GENERATOR STREQUAL "Visual Studio 9 2008")
SET(CMAKE_CXX_FLAGS "/nologo /Gy")
SET(CMAKE_CXX_FLAGS_DEBUG "/W3 /MTd /Z7 /Od")
SET(CMAKE_CXX_FLAGS_RELEASE "/w /MT /O2 /wd4530")
SET(CMAKE_CXX_FLAGS_MINSIZEREL "/MT /O2")
SET(CMAKE_CXX_FLAGS_RELWITHDEBINFO "/MTd /Z7 /Od")
SET(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} /SUBSYSTEM:CONSOLE")
ENDIF(CMAKE_GENERATOR STREQUAL "Visual Studio 8 2005" OR CMAKE_GENERATOR STREQUAL "Visual Studio 9 2008")
ENDIF(NOT WITH_SHARED_LIBS)
ENDIF(CMAKE_CXX_COMPILER MATCHES cl)
ELSE(WIN32 AND NOT CYGWIN)
IF(CMAKE_COMPILER_IS_GNUCXX)
# SET(CMAKE_CXX_FLAGS_DEBUG "${CMAKE_CXX_FLAGS_DEBUG} -O0 -g -fprofile-arcs -ftest-coverage -Wall -Wextra -Wno-unused-parameter")
SET(CMAKE_CXX_FLAGS_DEBUG "${CMAKE_CXX_FLAGS_DEBUG} -O0 -g -Wall -Wextra -Wno-unused-parameter -Wunknown-pragmas")
SET(CMAKE_CXX_FLAGS_RELEASE "${CMAKE_CXX_FLAGS_RELEASE} -O3 -Wunknown-pragmas")
SET(CMAKE_CXX_FLAGS_MINSIZEREL "${CMAKE_CXX_FLAGS_MINSIZEREL} -O6 -Wunknown-pragmas")
ENDIF(CMAKE_COMPILER_IS_GNUCXX)
ENDIF(WIN32 AND NOT CYGWIN)
IF(CMAKE_BUILD_TYPE MATCHES Debug)
ADD_DEFINITIONS(-DCMAKE_VERBOSE_MAKEFILE=ON)
ENDIF(CMAKE_BUILD_TYPE MATCHES Debug)

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deprecated/eo/CHANGELOG Normal file

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@ -0,0 +1,139 @@
CMAKE_MINIMUM_REQUIRED(VERSION 2.6)
######################################################################################
### 0) If you want to set your variables in eo-conf.cmake and avoid the cmd line
######################################################################################
#INCLUDE(eo-conf.cmake OPTIONAL)
######################################################################################
######################################################################################
### 1) Main project config
######################################################################################
# set the project namef and other variables
PROJECT(EO)
# CMake > 2.8 is needed, because of the FindOpenMP feature
#cmake_minimum_required(VERSION 2.8)
#SET(PROJECT_VERSION_MAJOR 1)
#SET(PROJECT_VERSION_MINOR 1)
#SET(PROJECT_VERSION_PATCH 1)
SET(PROJECT_VERSION "${PROJECT_VERSION_MAJOR}.${PROJECT_VERSION_MINOR}.${PROJECT_VERSION_PATCH}" CACHE STRING "Package version" FORCE)
SET(VERSION "${PROJECT_VERSION_MAJOR}.${PROJECT_VERSION_MINOR}${PROJECT_VERSION_MISC}" CACHE STRING "Global version" FORCE)
SET(GLOBAL_VERSION "${VERSION}")
SET(PACKAGE_BUGREPORT "eodev-help@sourceforge.net" CACHE STRING "Package bug report" FORCE)
SET(PACKAGE_NAME "Evolving Objects" CACHE STRING "Package name" FORCE)
SET(PACKAGE_STRING "${PACKAGE_NAME} ${PACKAGE_VERSION}"CACHE STRING "Package string full name" FORCE)
SET(PACKAGE_TARNAME "eo" CACHE STRING "Package tar name" FORCE)
# regular expression checking
INCLUDE_REGULAR_EXPRESSION("^.*$" "^$")
# set a language for the entire project.
ENABLE_LANGUAGE(CXX)
ENABLE_LANGUAGE(C)
######################################################################################
#####################################################################################
### 2) Include required modules / configuration files
#####################################################################################
FIND_PACKAGE(OpenMP)
IF(OPENMP_FOUND)
SET(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} ${OpenMP_C_FLAGS}")
SET(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${OpenMP_CXX_FLAGS}")
ENDIF()
INCLUDE(CMakeBackwardCompatibilityCXX)
INCLUDE(FindDoxygen)
INCLUDE(FindGnuplot)
INCLUDE(CheckLibraryExists)
IF(UNIX)
INCLUDE(ConfigureChecks.cmake)
ENDIF(UNIX)
INCLUDE(Dart OPTIONNAL)
# now create config headers
CONFIGURE_FILE(config.h.cmake ${CMAKE_CURRENT_BINARY_DIR}/config.h)
# now create config install_symlink script file
CONFIGURE_FILE(install_symlink.py.cmake ${CMAKE_CURRENT_BINARY_DIR}/install_symlink.py)
# now create PKGBUILD file for archlinux package manager
CONFIGURE_FILE(PKGBUILD.cmake ${CMAKE_CURRENT_BINARY_DIR}/PKGBUILD)
# Set a special flag if the environment is windows (should do the same in a config.g file)
IF (WIN32)
ADD_DEFINITIONS(-D_WINDOWS=1)
ENDIF (WIN32)
######################################################################################
######################################################################################
######################################################################################
### compilation of examples?
######################################################################################
#SET(ENABLE_CMAKE_EXAMPLE TRUE CACHE BOOL "Enable copy of benchs and parameters file?")
######################################################################################
######################################################################################
### 4) Test config
######################################################################################
#IF (ENABLE_CMAKE_TESTING)
# ENABLE_TESTING()
#ENDIF (ENABLE_CMAKE_TESTING)
######################################################################################
######################################################################################
### 5) Where must cmake go now ?
######################################################################################
#ADD_SUBDIRECTORY(app)
ADD_SUBDIRECTORY(doc)
ADD_SUBDIRECTORY(src)
ADD_SUBDIRECTORY(test)
ADD_SUBDIRECTORY(tutorial)
######################################################################################
######################################################################################
### 6) Install pkg-config config file for EO
######################################################################################
SET(PCPREFIX "/usr")
SET(PCFLAGS "-leoutils -leo -les -lga -lcma -lgcov")
SET(PCINCLUDEDIR "eo")
CONFIGURE_FILE(pc.cmake ${CMAKE_CURRENT_BINARY_DIR}/eo.pc)
INSTALL(FILES ${CMAKE_CURRENT_BINARY_DIR}/eo.pc DESTINATION local/${LIB}/pkgconfig COMPONENT headers)
######################################################################################
######################################################################################
### 7) Include packaging
######################################################################################
#INCLUDE(Packaging.cmake)
######################################################################################

502
deprecated/eo/COPYING Normal file
View file

@ -0,0 +1,502 @@
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<signature of Ty Coon>, 1 April 1990
Ty Coon, President of Vice
That's all there is to it!

View file

@ -0,0 +1,7 @@
set(CTEST_PROJECT_NAME "ParadisEO")
set(CTEST_NIGHTLY_START_TIME "00:00:00 EST")
set(CTEST_DROP_METHOD "http")
set(CTEST_DROP_SITE "cdash.inria.fr")
set(CTEST_DROP_LOCATION "/CDash/submit.php?project=ParadisEO")
set(CTEST_DROP_SITE_CDASH TRUE)

View file

@ -0,0 +1,29 @@
# NOTE: only add something here if it is really needed by EO
INCLUDE(CheckIncludeFile)
INCLUDE(CheckIncludeFiles)
INCLUDE(CheckSymbolExists)
INCLUDE(CheckFunctionExists)
INCLUDE(CheckLibraryExists)
CHECK_LIBRARY_EXISTS(m cos "/usr/lib" HAVE_LIBM)
CHECK_INCLUDE_FILES(math.h "math.h" HAVE_MATH_H)
CHECK_INCLUDE_FILES(stdio.h "stdio.h" HAVE_STDIO_H)
CHECK_INCLUDE_FILES(stdlib.h "stdlib.h" HAVE_STDLIB_H)
CHECK_INCLUDE_FILES(string.h "string.h" HAVE_STRING_H)
CHECK_INCLUDE_FILES(strings.h "strings.h" HAVE_STRINGS_H)
CHECK_INCLUDE_FILES(malloc.h "malloc.h" HAVE_MALLOC_H)
CHECK_INCLUDE_FILES(limits.h "limits.h" HAVE_LIMITS_H)
CHECK_INCLUDE_FILES(unistd.h "unistd.h" HAVE_UNISTD_H)
CHECK_INCLUDE_FILES(stdint.h "stdint.h" HAVE_STDINT_H)
# Use check_symbol_exists to check for symbols in a reliable
# cross-platform manner. It accounts for different calling
# conventions and the possibility that the symbol is defined as a
# macro. Note that some symbols require multiple includes in a
# specific order. Refer to the man page for each symbol for which a
# check is to be added to get the proper set of headers. Example :
#check_symbol_exists(asymbol "symbole.h" HAVE_SYMBOLE)

45
deprecated/eo/ForRelease Normal file
View file

@ -0,0 +1,45 @@
In order to create a new release from the current repository, perform the
following steps:
- If necessary, create a branch named "eo_x.y.z"
- Set version number in eo-conf.cmake
- Check/update NEWS file, set release date and version in NEWS.
- use the "archive_current.sh" script to create the source archive
- Build the packages
- Put source archive and packages files at SourceForge
- Post news on SourceForge project-page
- Send announcement to mailing lists
- Bump version number to next "x.y.z-edge" in eo-conf.cmake
When reaching stable versions:
- prepare a message with the following template:
-----8<-----
A new version of the "Evolving Objects" framework is available.
EO is a template-based, C++ evolutionary computation library which
helps you to write your own stochastic optimization algorithms
insanely fast.
Learn more about EO on the official website:
http://eodev.sourceforge.net/
You will find the release x.y.z at the following address:
https://sourceforge.net/projects/eodev/files/eo/
Here is a summary of the change log:
- XXXXX
- and more…
Do not hesitate to submit the bugs you will face:
https://sourceforge.net/apps/trac/eodev/wiki/WikiStart
Happy evolutionary hacking.
-----8<-----
- Post the message to:
- EO news https://sourceforge.net/news/?group_id=9775
- EO mailing list: eodev-main@lists.sourceforge.net
- ParadisEO mailing list: paradiseo-users@lists.gforge.inria.fr
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Basic Installation
==================
The simplest way to compile the libraries or the provided softwares is to run
one of the script beginnig with "build_". Each script permits to build different
parts of the framework, with different options.
To compile EO you will need CMake and a compiler for your system.
So far the available scripts for posix systems using g++ are the following:
* build_gcc_linux_release : the most usefull script, build the core libraries in release mode
* build_gcc_linux_debug : build the core libraries with debugging informations in the binaries
* build_gcc_linux_tutorial : build the core libraries and the tutorials
* build_gcc_linux_unittest : build the core libraries and the tests executables
* build_gcc_linux_stl_parallel : build the core libraries enabling STL parallel algorithms (like sorting)
* build_gcc_linux_pyeo : build the core libraries and the python module
* distclean : remove the "release/" and "debug/" directories where the build scripts put the binaries
For Windows systems using Visual Studio:
* build_vs2008_release.bat
You may need to adapt the ID to your version of Visual Studio, edit
the "Visual Studio 9 2008" string accordingly.
The libraries are in the "release/lib/" or "debug/lib/" directories.
Compilers and Options
=====================
The build scripts are really simple, take a look at them to see how to use the
build system.
Basically, the steps are:
0. remove any old build directory that's on the way:
rm -rf build/
1. create a directory in which to put build files:
mkdir build/
2. go in this directory:
cd build/
3. call cmake with the options you want, using the "-D" option and passing the
EO directory as an argument, for example:
cmake -DCMAKE_BUILD_TYPE=Debug -DENABLE_CMAKE_TESTING =1 ..
4. now type your favorite "make" command, like:
make -j # use several processors at once when possible
5. enjoy:
./debug/test/t-eofitness
Some of the available options are:
* CMAKE_BUILD_TYPE :
* "Debug" : embed debugging informations in the binaries) or
* "Release" : no debugging info and some optimizations (the default)
* ENABLE_EO_TUTORIAL : build the tutorial ("no" by default)
* ENABLE_CMAKE_TESTING : build the tests executables ("no" by default)
* ENABLE_PYEO : build the python module ("no" by default)
You can pass generic options to the compiler, like:
* _GLIBCXX_PARALLEL : use the parallel version of the STL
Installation using packages
===========================
To construct a dummy template of the EO package you will need CPack. Be warned
that those do not guarantee correct dependencies and version management.
Use the "package_*" scripts:
* package_deb : for debian-like systems
* package_rpm : for red-hat-like systems
Or go through the following steps:
1. go in the build directory where your binaries are:
cd build/
2. call CPack specifying the desired package system:
cpack -G DEB
3. install the package:
sudo dpkg -i EO-1.1.1-Linux.deb
Basic installation
==================
To install the framework system-wide, copy the "eo/" directory somewhere in your
path. The "lib/" directory should be reachable for the linker and the "src/"
directory must be in the compiler include path.

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That's all there is to it!

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